BAC Information

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BAC

Clone NameB6Ng01-022J01
Chromosome4 (Build37)
Map Location 100,754,116 - 100,869,783
singlet/doubletdoublet
Overlap geneRaver2, Jak1
Upstream geneRor1, Ube2u, LOC277707, LOC621573, Cachd1, LOC100039747
Downstream geneE130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022J01.bB6Ng01-022J01.g
ACCDH854739DH854740
length962933
definitionDH854739|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J01, 5' end.DH854740|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,868,824 - 100,869,783)(100,754,116 - 100,755,003)
sequence
gaattctgttttgtgatatttagctcctgccggtcctgtgaaataaatcc
tatttttatctcttcacttgtactgtgaatattgaggatgttaagtaact
tgccagggaagccagattcaagtcattcaggtcactagaactccagcctt
tgtacttaaccttcagcagactattcctcagtgtgggaccaggattctgt
ttattctgcgttcttcccagcaggctcccagcctggagtattcgaaatta
tatatatgtattttttcattttctctgaatttgtcaacattgtattgcta
ttttctgctttagaaaggtttttgattccttaaaataactcactgtaggt
tagatcttatctttttgaaagtcagtatttacaacagactggactctaac
tcaaagaggcatctgcctcccaagtgctggggttaaaaggcatctaccat
ggcacctggaaagatagtctctgcagtggaaatcacctaggacatgcagt
gttttgtttagatttttatccttgatttagttatgactcagtctttttgc
tagacaaagctggcattggcctttggctcgggtacacttgatgatagcgt
tctggagcattagaactgtctagttcactttctgttttgccttccatcta
aaattcagtagtctctgtatcccttatacaaatattaaaacttcaggagc
tatgtggattgtcatatagaaggtgctggaactttgcctgtttggaagtg
gttttgagttggctgtgtttagactcacaaaactgttttgtttgttttac
ttgtccatcagtcagaaactatcagagatactgccacatacataaggacg
gtgataaaggattcgaggaagtctgtagaatgtctctgatttctgtcctg
cataaccaacaaagtaactctctaccactgaatgacggctattttttctt
tacttctttgct
gaattcagaaggttgaggaagaagaggcctggctggggctacatacatga
aaacgtatcagataagatgaagcaaggcagtgaggagctagggagaggag
atggctcactctgcgtacttcttgccatgtaactgtgagaacccaaggct
cagagttcggtacccacataggaagctggatgtggtgtgcacctgcggtc
ctagtgctgaggaggtagagatggggggacggacccttggggtctagctg
aaggaagtggcagttttactgggagacactgccaaaatagaacaagataa
gataagataaaatggaaagtaatggaggaacacacctgtggtcatccctc
tgcctccacatgcatgcatttgcacacctgcccacatacatgcgtacaca
cattgatacctcaacacacatgtgtacctgcatacatatatttatacatt
catacacatatgttcctacctgtgcacacattcacatatacagtcacccc
tgaacatatacatacatacacacattcacacgttcacagattgaccaaag
ttagtttctttcagtgtatcaagaactttatcttggtatttcttgattta
aaaagaaaaaggtttttcttttccttttttgatagatttgggggggtgca
actttcttgagcccctgaatgttttctaggcactgttctgtcctcttgtg
tgtggttattgtagatcgagaactgttcccactgtttccctctccagcct
tatttgtcattttcttttattaaacatttgttaatctgtgagcccagtaa
gagtatctgaagctgtatttgtgcctgcattccctcttttctcctcccct
gcattccaccccacccctgctcacccctgcactgggccttcgcttttctc
tttctccagcagctatggcaattatctgcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_100868824_100869783
seq2: B6Ng01-022J01.b_43_1004 (reverse)

seq1  AGCAAAGATGTAAAAGAAAAATAGCCGTCATTCAGTGGTAGAGAGTTACT  50
      |||||||| |||||  ||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAAGTAAAGAAAAAATAGCCGTCATTCAGTGGTAGAGAGTTACT  50

seq1  TTGTTGGTTTATGCAGGACAGAAATCAGAGACATTCTACAGACTT-CTCG  99
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTTGG-TTATGCAGGACAGAAATCAGAGACATTCTACAGACTTCCTCG  99

seq1  -ATTCTTTATCACCGT-CTTATGTATGTGGCAGTATCTCTGATAGTTTCT  147
       || |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATCCTTTATCACCGTCCTTATGTATGTGGCAGTATCTCTGATAGTTTCT  149

seq1  GACTGATGGACAAGTAAAACAAACAAAACAGTTTTGTGAGTCTAAACACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGGACAAGTAAAACAAACAAAACAGTTTTGTGAGTCTAAACACA  199

seq1  GCCAACTCAAAACCACTTCCAAACAGGCAAAGTTCCAGCACCTTCTATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCAAAACCACTTCCAAACAGGCAAAGTTCCAGCACCTTCTATAT  249

seq1  GACAATCCACATAGCTCCTGAAGTTTTAATATTTGTATAAGGGATACAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCCACATAGCTCCTGAAGTTTTAATATTTGTATAAGGGATACAGA  299

seq1  GACTACTGAATTTTAGATGGAAGGCAAAACAGAAAGTGAACTAGACAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTGAATTTTAGATGGAAGGCAAAACAGAAAGTGAACTAGACAGTT  349

seq1  CTAATGCTCCAGAACGCTATCATCAAGTGTACCCGAGCCAAAGGCCAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTCCAGAACGCTATCATCAAGTGTACCCGAGCCAAAGGCCAATG  399

seq1  CCAGCTTTGTCTAGCAAAAAGACTGAGTCATAACTAAATCAAGGATAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGTCTAGCAAAAAGACTGAGTCATAACTAAATCAAGGATAAAA  449

seq1  ATCTAAACAAAACACTGCATGTCCTAGGTGATTTCCACTGCAGAGACTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAAAACACTGCATGTCCTAGGTGATTTCCACTGCAGAGACTAT  499

seq1  CTTTCCAGGTGCCATGGTAGATGCCTTTTAACCCCAGCACTTGGGAGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGGTGCCATGGTAGATGCCTTTTAACCCCAGCACTTGGGAGGCA  549

seq1  GATGCCTCTTTGAGTTAGAGTCCAGTCTGTTGTAAATACTGACTTTCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCTTTGAGTTAGAGTCCAGTCTGTTGTAAATACTGACTTTCAAA  599

seq1  AAGATAAGATCTAACCTACAGTGAGTTATTTTAAGGAATCAAAAACCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGATCTAACCTACAGTGAGTTATTTTAAGGAATCAAAAACCTTT  649

seq1  CTAAAGCAGAAAATAGCAATACAATGTTGACAAATTCAGAGAAAATGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAGAAAATAGCAATACAATGTTGACAAATTCAGAGAAAATGAAA  699

seq1  AAATACATATATATAATTTCGAATACTCCAGGCTGGGAGCCTGCTGGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATATATATAATTTCGAATACTCCAGGCTGGGAGCCTGCTGGGAA  749

seq1  GAACGCAGAATAAACAGAATCCTGGTCCCACACTGAGGAATAGTCTGCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCAGAATAAACAGAATCCTGGTCCCACACTGAGGAATAGTCTGCTG  799

seq1  AAGGTTAAGTACAAAGGCTGGAGTTCTAGTGACCTGAATGACTTGAATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAGTACAAAGGCTGGAGTTCTAGTGACCTGAATGACTTGAATCT  849

seq1  GGCTTCCCTGGCAAGTTACTTAACATCCTCAATATTCACAGTACAAGTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCTGGCAAGTTACTTAACATCCTCAATATTCACAGTACAAGTGA  899

seq1  AGAGATAAAAATAGGATTTATTTCACAGGACCGGCAGGAGCTAAATATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAAATAGGATTTATTTCACAGGACCGGCAGGAGCTAAATATCA  949

seq1  CAAAACAGAATTC  960
      |||||||||||||
seq2  CAAAACAGAATTC  962

seq1: chr4_100754116_100755003
seq2: B6Ng01-022J01.g_111_998

seq1  CATGAAAACGTATCAGATAAGATGAAGCAAGGCAGTGAGGAGCTAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACGTATCAGATAAGATGAAGCAAGGCAGTGAGGAGCTAGGGAG  50

seq1  AGGAGATGGCTCACTCTGCGTACTTCTTGCCATGTAACTGTGAGAACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGCTCACTCTGCGTACTTCTTGCCATGTAACTGTGAGAACCCA  100

seq1  AGGCTCAGAGTTCGGTACCCACATAGGAAGCTGGATGTGGTGTGCACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGAGTTCGGTACCCACATAGGAAGCTGGATGTGGTGTGCACCTG  150

seq1  CGGTCCTAGTGCTGAGGAGGTAGAGATGGGGGGACGGACCCTTGGGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCTAGTGCTGAGGAGGTAGAGATGGGGGGACGGACCCTTGGGGTCT  200

seq1  AGCTGAAGGAAGTGGCAGTTTTACTGGGAGACACTGCCAAAATAGAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGGAAGTGGCAGTTTTACTGGGAGACACTGCCAAAATAGAACAA  250

seq1  GATAAGATAAGATAAAATGGAAAGTAATGGAGGAACACACCTGTGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATAAGATAAAATGGAAAGTAATGGAGGAACACACCTGTGGTCAT  300

seq1  CCCTCTGCCTCCACATGCATGCATTTGCACACCTGCCCACATACATGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCTCCACATGCATGCATTTGCACACCTGCCCACATACATGCGT  350

seq1  ACACACATTGATACCTCAACACACATGTGTACCTGCATACATATATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTGATACCTCAACACACATGTGTACCTGCATACATATATTTAT  400

seq1  ACATTCATACACATATGTTCCTACCTGTGCACACATTCACATATACAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATACACATATGTTCCTACCTGTGCACACATTCACATATACAGTC  450

seq1  ACCCCTGAACATATACATACATACACACATTCACACGTTCACAGATTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAACATATACATACATACACACATTCACACGTTCACAGATTGAC  500

seq1  CAAAGTTAGTTTCTTTCAGTGTATCAAGAACTTTATCTTGGTATTTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAGTTTCTTTCAGTGTATCAAGAACTTTATCTTGGTATTTCTTG  550

seq1  ATTTAAAAAGAAAAAGGTTTTTCTTTTCCTTTTTTGATAGATTTGGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGAAAAAGGTTTTTCTTTTCCTTTTTTGATAGATTTGGGGGG  600

seq1  GTGCAACTTTCTTGAGCCCCTGAATGTTTTCTAGGCACTGTTCTGTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTTTCTTGAGCCCCTGAATGTTTTCTAGGCACTGTTCTGTCCTC  650

seq1  TTGTGTGTGGTTATTGTAGATCGAGAACTGTTCCCACTG-TTCCCTCTCC  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGTGTGTGGTTATTGTAGATCGAGAACTGTTCCCACTGTTTCCCTCTCC  700

seq1  AGCCTTATTTGTCATTTTC-TTTATTAAACATTTGTTAATCTGTGAGCCC  748
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCCTTATTTGTCATTTTCTTTTATTAAACATTTGTTAATCTGTGAGCCC  750

seq1  AGTAAGAGTATCTGAAGCTGTATTTGTGCCTGCATTCCCTCTTTTCTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGTATCTGAAGCTGTATTTGTGCCTGCATTCCCTCTTTTCTCCT  800

seq1  CCCCTGCATTCCACCCCACCCCCTCCTCACCCCTGCACTGGGCCTTCGCT  848
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  CCCCTGCATTCCACCCCA-CCCCTGCTCACCCCTGCACTGGGCCTTCGCT  849

seq1  TTTCTCTTTCTCCAGCCAGCTACTGCAATTATCTGCATTT  888
      ||||||||||||||| ||||||  ||||||||||||||||
seq2  TTTCTCTTTCTCCAG-CAGCTATGGCAATTATCTGCATTT  888