BAC Information

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BAC

Clone NameB6Ng01-023C14
Chromosome4 (Build37)
Map Location 102,843,239 - 103,044,973
singlet/doubletdoublet
Overlap geneSlc35d1, 4921539E11Rik, 4930456L15Rik, Oma1
Upstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1
Downstream geneLOC665451, LOC100039940, EG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023C14.bB6Ng01-023C14.g
ACCDH855157DH855158
length1,0671,155
definitionDH855157|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C14, 5' end.DH855158|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,843,239 - 102,844,326)(103,043,811 - 103,044,973)
sequence
gaattctaacacacattttccagaaaaagtatttatttgacatcattaaa
aaaatagttaggcacatcattttccatgtttatgtcacctgatttacata
cctcaatgctcagtacctcttaaaaacactaagtaaattggtaaatagag
tctatattgaaaagacgtgtgagaggcgaacacctgtaggcaaaggtcgc
tcgtcagcatgagaaaggaaacatctgtgaacaaaataatctctaaaaac
attctgtgagaagataaaatctaaccagtagatttcttttttaaaaatat
attcaacgtaaaagttaaaaacaagacactagagagtctctgcatcctac
aggtgaactgcgaacagcaggagcagaaggcaggcctagaaaagtgatgg
tgacaaaggggctggatccagtgtttcgctctgaggtgagggatgaaggc
ctgggagctacctcagggtgacagctgagtcttcactgagctaccatact
gaaatgcaacggactcccactgagacagaaaacagatttccctttttcat
atttgccaccataatatgaaaataattctcttttttaaaagcagaataac
agtggctataattatacagagactatttttgttttgtattttcaaaaaga
taagggacagagtctgttgcctaagcatcttgaaggcaagaagcagtttc
atgagtcttggaaaacatggtgccctatgctgctggcactgaaggaagga
tggcagacctgtgtctgctgagcgctgtgtgcactgggttccatattcag
tatccactgcactcattctcagtattttttccccagggaaggaaagttcc
attatagcctgtgggagaaagcaatcttggcacagacgtgggaagaaaga
gcatcattgccagagaggactcggggaagacagttctaagaagcttggtg
gctcatcggagctaaagaaatatgagaccatggcctctgaatggaagcct
gttcttttggggtggcctaaatcaaggatgtatgtcttacttacaaaccc
ggacacttttcttcttt
gaattctttcactctatcaaactgcccagtgttgagaattttatttgctt
gaccagcacagttgtccctggtatataattcctggaccttggactgaccc
tagcagaacaagtggcaagaagaccttaggcttaggaagacaggcactga
agccttcccatctactaatgtatgatatatgtcaattaattaataacttt
tcttaatcggttttctcatttgtagaatgaaaccatatgaccattagctc
attcatataaatactcctttgtataagggagagaataatcaaataacagc
agaataatgaaaatattaaacacctcattatgtgagatatttacattggt
ggaaataccagtgccagcccagccacttagtgatgttgggacagcatctc
atggagtacacagatacacacaagattttcaggcttagactccaagcaaa
gacagccttgtccatggcttcccttaagagtgaagaagaaaacactgcct
ctgaaaaacatttgctttatttcttattggccaatctagtactcattgct
tctagatcagttactggctggcaaagagcactgcactcatgattcgtttt
cttgggcaggacacacgccacctggaagtgcagtttgctggaagagaaga
tgaagaacagttattgattagtatataaaacagaaacccctcacagacac
atccgtttgtgtgttcaggaaggttccagacacctctcatctcgtgttaa
ctattacccatgcctactattagaattgctaacaagaagtacccaggggg
aatttatgttagtcctcagtgatgtctttggaaaggtaccacaaatggga
ttgtcttgctgtataccaccataatgtgttattcacatcagtctcagtaa
atggtactctgagtggattcaaaacatgtgtcaaaacacagtacaaaatt
tgtgccaccctggcttcatttcagaaaggagaaaggcagtctttggtggt
catctgtattcacatcatcttctttaagtaggatccctctgccctttggt
gtcatggcccaacatgatggtaactcttaatttgattatttttgtcagca
catgtttcgaatttctatatgtcaatcatgcttgtcacttatgggacata
aaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_102843239_102844326
seq2: B6Ng01-023C14.b_40_1106

seq1  GAATTCTAACACACATTTTCCAGAAAAAGTATTTATTTGACATCATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACACACATTTTCCAGAAAAAGTATTTATTTGACATCATTAAA  50

seq1  AAAATAGTTAGGCACATCATTTTCCATGTTTATGTCACCTGATTTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTAGGCACATCATTTTCCATGTTTATGTCACCTGATTTACATA  100

seq1  CCTCAATGCTCAGTACCTCTTAAAAACACTAAGTAAATTGGTAAATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATGCTCAGTACCTCTTAAAAACACTAAGTAAATTGGTAAATAGAG  150

seq1  TCTATATTGAAAAGACGTGTGAGAGGCGAACACCTGTAGGCAAAGGTCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGAAAAGACGTGTGAGAGGCGAACACCTGTAGGCAAAGGTCGC  200

seq1  TCGTCAGCATGAGAAAGGAAACATCTGTGAACAAAATAATCTCTAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAGCATGAGAAAGGAAACATCTGTGAACAAAATAATCTCTAAAAAC  250

seq1  ATTCTGTGAGAAGATAAAATCTAACCAGTAGATTTCTTTTTTAAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGAGAAGATAAAATCTAACCAGTAGATTTCTTTTTTAAAAATAT  300

seq1  ATTCAACGTAAAAGTTAAAAACAAGACACTAGAGAGTCTCTGCATCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACGTAAAAGTTAAAAACAAGACACTAGAGAGTCTCTGCATCCTAC  350

seq1  AGGTGAACTGCGAACAGCAGGAGCAGAAGGCAGGCCTAGAAAAGTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACTGCGAACAGCAGGAGCAGAAGGCAGGCCTAGAAAAGTGATGG  400

seq1  TGACAAAGGGGCTGGATCCAGTGTTTCGCTCTGAGGTGAGGGATGAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGGGGCTGGATCCAGTGTTTCGCTCTGAGGTGAGGGATGAAGGC  450

seq1  CTGGGAGCTACCTCAGGGTGACAGCTGAGTCTTCACTGAGCTACCATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCTACCTCAGGGTGACAGCTGAGTCTTCACTGAGCTACCATACT  500

seq1  GAAATGCAACGGACTCCCACTGAGACAGAAAACAGATTTCCCTTTTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAACGGACTCCCACTGAGACAGAAAACAGATTTCCCTTTTTCAT  550

seq1  ATTTGCCACCATAATATGAAAATAATTCTCTTTTTAAAAAGCAGAATAAC  600
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTGCCACCATAATATGAAAATAATTCTCTTTTTTAAAAGCAGAATAAC  600

seq1  AGTGGCTATAATTATACAGAGACTATTTTTGTTTTGTATTTTCAAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTATAATTATACAGAGACTATTTTTGTTTTGTATTTTCAAAAAGA  650

seq1  TAAGGGACAGAGTCTGTTGCCTAAGCATC-TGAAGGCAAGAAGCAGTTTC  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAGGGACAGAGTCTGTTGCCTAAGCATCTTGAAGGCAAGAAGCAGTTTC  700

seq1  ATGAGTCTTGGAAAACATGGTGCCCTATGCTGCTGGCACTGAAGGAAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTTGGAAAACATGGTGCCCTATGCTGCTGGCACTGAAGGAAGGA  750

seq1  TGGCAGACCTGTGTCTGCTGAGCGCTGTGTGCACTGGGTTCCATATTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACCTGTGTCTGCTGAGCGCTGTGTGCACTGGGTTCCATATTCAG  800

seq1  TATCCACTGCACTCATTCTCAGTATTTTTTCCCCAGGGAAGGAAAGTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTGCACTCATTCTCAGTATTTTTTCCCCAGGGAAGGAAAGTTCC  850

seq1  ATTATAGCCTGTGGGAGAAAGC-AGCATGGCACAGACGTGGGAAGAAAGA  898
      |||||||||||||||||||||| | | |||||||||||||||||||||||
seq2  ATTATAGCCTGTGGGAGAAAGCAATCTTGGCACAGACGTGGGAAGAAAGA  900

seq1  GCATCATTGCCAGAGAAGGACTCGGGGAAGACAGTTCTAAG-AGCTGTGT  947
      ||||||||||||||| ||||||||||||||||||||||||| ||||  ||
seq2  GCATCATTGCCAGAG-AGGACTCGGGGAAGACAGTTCTAAGAAGCTTGGT  949

seq1  GGCTCATCTGAGCTAGAAGAAAATATGAGGACCATGGCCTCTGAATGGAA  997
      |||||||| |||||| ||| |||||||| |||||||||||||||||||||
seq2  GGCTCATCGGAGCTA-AAG-AAATATGA-GACCATGGCCTCTGAATGGAA  996

seq1  GCCTTGTTCTTTTGGGGTGGGCCTAAAATCAGTGCAGGTAGGTCTTACTT  1047
      ||| |||||||||||||| ||||| ||||||  | | ||| |||||||||
seq2  GCC-TGTTCTTTTGGGGT-GGCCT-AAATCA-AGGATGTATGTCTTACTT  1042

seq1  ACAAATCGCTGACTCTTTTCTTTTCCTTTTTTTTCTTCTTT  1088
      ||||| | | ||| ||||||  ||| ||             
seq2  ACAAA-CCCGGACACTTTTC--TTCTTT-------------  1067

seq1: chr4_103043811_103044973
seq2: B6Ng01-023C14.g_72_1226 (reverse)

seq1  GTTTTTATGTCCCAATAAGTTGACAAGCATGATTGACCATATGAGACATC  50
      ||||||||||||| ||||| |||||||||||||||| ||||| ||| || 
seq2  GTTTTTATGTCCC-ATAAG-TGACAAGCATGATTGA-CATAT-AGAAATT  46

seq1  TGAAACATGTTGCTGACAAAAATAATACAAAACTAAGAG-TACCATCATG  99
       |||||||| ||||||||||||||||   ||| |||||| ||||||||||
seq2  CGAAACATG-TGCTGACAAAAATAAT--CAAATTAAGAGTTACCATCATG  93

seq1  TTTGGGCCACTGACACC-AAGGGCAGGAGGTACCTACTTAAAGAAGATGA  148
       |||||||| ||||||| ||||||||  ||  ||||||||||||||||||
seq2  -TTGGGCCA-TGACACCAAAGGGCAGAGGGATCCTACTTAAAGAAGATGA  141

seq1  TGTGAATACAGATGA-CACCAAAGAACTGCCTTTCTCCTTTCTGGAAATG  197
      ||||||||||||||| |||||||| |||||||||||||||||| ||||||
seq2  TGTGAATACAGATGACCACCAAAG-ACTGCCTTTCTCCTTTCT-GAAATG  189

seq1  AAGCCAGGGTGGCACAAATTTTGTACTGTGTTTTGACACATGTTTTGAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGTGGCACAAATTTTGTACTGTGTTTTGACACATGTTTTGAAT  239

seq1  CCACTCAGAGTACCATTTACTGAGACTGATGTGAATAACACATTATGGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGAGTACCATTTACTGAGACTGATGTGAATAACACATTATGGTG  289

seq1  GTATACAGCAAGACAATCCCATTTGTGGTACCTTTCCAAAGACATCACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAGCAAGACAATCCCATTTGTGGTACCTTTCCAAAGACATCACTG  339

seq1  AGGACTAACATAAATTCCCCCTGGGTACTTCTTGTTAGCAATTCTAATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAACATAAATTCCCCCTGGGTACTTCTTGTTAGCAATTCTAATAG  389

seq1  TAGGCATGGGTAATAGTTAACACGAGATGAGAGGTGTCTGGAACCTTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGGGTAATAGTTAACACGAGATGAGAGGTGTCTGGAACCTTCCT  439

seq1  GAACACACAAACGGATGTGTCTGTGAGGGGTTTCTGTTTTATATACTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACAAACGGATGTGTCTGTGAGGGGTTTCTGTTTTATATACTAAT  489

seq1  CAATAACTGTTCTTCATCTTCTCTTCCAGCAAACTGCACTTCCAGGTGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTGTTCTTCATCTTCTCTTCCAGCAAACTGCACTTCCAGGTGGC  539

seq1  GTGTGTCCTGCCCAAGAAAACGAATCATGAGTGCAGTGCTCTTTGCCAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCTGCCCAAGAAAACGAATCATGAGTGCAGTGCTCTTTGCCAGC  589

seq1  CAGTAACTGATCTAGAAGCAATGAGTACTAGATTGGCCAATAAGAAATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGATCTAGAAGCAATGAGTACTAGATTGGCCAATAAGAAATAA  639

seq1  AGCAAATGTTTTTCAGAGGCAGTGTTTTCTTCTTCACTCTTAAGGGAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTTTTTCAGAGGCAGTGTTTTCTTCTTCACTCTTAAGGGAAGC  689

seq1  CATGGACAAGGCTGTCTTTGCTTGGAGTCTAAGCCTGAAAATCTTGTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAAGGCTGTCTTTGCTTGGAGTCTAAGCCTGAAAATCTTGTGTG  739

seq1  TATCTGTGTACTCCATGAGATGCTGTCCCAACATCACTAAGTGGCTGGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTACTCCATGAGATGCTGTCCCAACATCACTAAGTGGCTGGGC  789

seq1  TGGCACTGGTATTTCCACCAATGTAAATATCTCACATAATGAGGTGTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGGTATTTCCACCAATGTAAATATCTCACATAATGAGGTGTTTA  839

seq1  ATATTTTCATTATTCTGCTGTTATTTGATTATTCTCTCCCTTATACAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCATTATTCTGCTGTTATTTGATTATTCTCTCCCTTATACAAAG  889

seq1  GAGTATTTATATGAATGAGCTAATGGTCATATGGTTTCATTCTACAAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTATATGAATGAGCTAATGGTCATATGGTTTCATTCTACAAATG  939

seq1  AGAAAACCGATTAAGAAAAGTTATTAATTAATTGACATATATCATACATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCGATTAAGAAAAGTTATTAATTAATTGACATATATCATACATT  989

seq1  AGTAGATGGGAAGGCTTCAGTGCCTGTCTTCCTAAGCCTAAGGTCTTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGGGAAGGCTTCAGTGCCTGTCTTCCTAAGCCTAAGGTCTTCTT  1039

seq1  GCCACTTGTTCTGCTAGGGTCAGTCCAAGGTCCAGGAATTATATACCAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTGTTCTGCTAGGGTCAGTCCAAGGTCCAGGAATTATATACCAGG  1089

seq1  GACAACTGTGCTGGTCAAGCAAATAAAATTCTCAACACTGGGCAGTTTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGTGCTGGTCAAGCAAATAAAATTCTCAACACTGGGCAGTTTGA  1139

seq1  TAGAGTGAAGGAATTC  1163
      ||||||||| ||||||
seq2  TAGAGTGAAAGAATTC  1155