BAC Information

Click to search

BAC

Clone NameB6Ng01-023D12
Chromosome4 (Build37)
Map Location 129,206,896 - 129,331,338
singlet/doubletdoublet
Overlap geneHdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1
Downstream geneTmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023D12.bB6Ng01-023D12.g
ACCDH855197DH855198
length8741,077
definitionDH855197|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D12, 5' end.DH855198|Mus musculus domesticus DNA, BAC clone: B6Ng01-023D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,206,896 - 129,207,772)(129,330,248 - 129,331,338)
sequence
gaattctgatcaagtccttcccactaaaactttgttgacatgttagaagt
gtcctgatggtcccaacacatatccacacaatattatttactgtattgtg
cgtgtaagagccttatgtgtaccatgtacgaacagagcctatggagccag
aggggcactggattccctagacctggagtcccagacaactgtgacagcat
ctgccatgcggatgctgggaatcacatacaggtcctctctgggctctcac
cagctgggtccttatggaatccatgctacctcagcttgatggccgctgag
ctgattctccttccctcttctccacagagtatggtgatgtacactgctct
ctactactgcactcaggagcagaggagactagagatcacacctggactgt
acagttcaagtcccgcctacagtataaaactaccttttttccattctagc
catagtcccacccctgtcctctctcccacagttcctcattgcatccctgt
ctcgaaaaaccaaaataaaaaaaaaaaaaaaccaaaccaacaaacaaaaa
aattaaagtgcctttaattccagcacttgggaggcagatgcagaatctct
gagttctaggacagccagggggccacagagagaaacagtctcagaaaaac
aaaaactctcacaggctttgttgtttcacatttttttggttttgtttttg
ttttcaagacagtgtttctctgtatagccctggctgtcctggaactcact
ttgtagaccaggctggcctcgaactgagaaatccgctgcctctgcctcct
gagtgctgggattaaaggcatgtgccatcacacccggctggtttctgttg
ttgttttttttttttttttttttt
gaattccgtgttgggaaggggtaagccatgataggcttggtgagagagct
gatgtagccctatgatcagtcctcctctgcttccaacaggtctctccttg
tttgcctgtattgtcccgactgctcttcagcagtgactcagacttgctgg
cagatgcttgctgggccctctcctacctgtctgatggccccaatgagaag
atccaggcagtcatagactctggagtctgccggagattggtagagcttct
gatgtgagtggtttgagttcaagagggtgaaagtttccttagctttacca
agttcaaagacctctagccaaaggcatggtggtgtggctgtaatcccagc
ctttgggagacaggagaatgacaaattcaaggacagggtgggctgcagta
taaagactgtctcacaaaacaaagcaaaaaaacaaaaaatctacaaacag
cagatagctgacctacaaaggtctggagctgcaaggaatatgggcagaag
aacctgtgttggttttcggcagtcggcaggaccgactgatgcgctgtctc
tccactgatagctgctcttcctctgtaggcacaacgattacaaagtggcg
tctcctgccttgagagctgtgggtaatattgtcactggggatgacatcca
gacccaggtgaggaagaagaggggtgggaccttagcttaggtcagctgtg
ggagaacagagagagcgctgtagaccaaagtcttcctgggtaactgcatg
gtctagcagagaaagtgtgactttaaattaagtggttgtagcactggcag
tctctgtattctcatagttccttcttctcttaagcaattagaaacaaatc
atcccgctgctgcttgagcaagaaagcgaaatggaatgactgggtttgtt
tgctgcaacagtgttgtgaggaatgaagtctggtccatgatccttttgag
acactaaaagctgtggggtcaccatgcttctaggccttcactcatgctaa
ctcacgtagccttttcagccgtgtggcaacactgtaatccagcactgtga
gtagagcagagctagctagttcagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129206896_129207772
seq2: B6Ng01-023D12.b_46_919

seq1  GAATTCTGATCAAGTCCTTCCCACTAAAACTTTGTTGACATGTTAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCAAGTCCTTCCCACTAAAACTTTGTTGACATGTTAGAAGT  50

seq1  GTCCTGATGGTCCCAACACATATCCACACAATATTATTTACTGTATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGATGGTCCCAACACATATCCACACAATATTATTTACTGTATTGTG  100

seq1  CGTGTAAGAGCCTTATGTGTACCATGTACGAACAGAGCCTATGGAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAAGAGCCTTATGTGTACCATGTACGAACAGAGCCTATGGAGCCAG  150

seq1  AGGGGCACTGGATTCCCTAGACCTGGAGTCCCAGACAACTGTGACAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCACTGGATTCCCTAGACCTGGAGTCCCAGACAACTGTGACAGCAT  200

seq1  CTGCCATGCGGATGCTGGGAATCACATACAGGTCCTCTCTGGGCTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGCGGATGCTGGGAATCACATACAGGTCCTCTCTGGGCTCTCAC  250

seq1  CAGCTGGGTCCTTATGGAATCCATGCTACCTCAGCTTGATGGCCGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGTCCTTATGGAATCCATGCTACCTCAGCTTGATGGCCGCTGAG  300

seq1  CTGATTCTCCTTCCCTCTTCTCCACAGAGTATGGTGATGTACACTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTCCTTCCCTCTTCTCCACAGAGTATGGTGATGTACACTGCTCT  350

seq1  CTACTACTGCACTCAGGAGCAGAGGAGACTAGAGATCACACCTGGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTGCACTCAGGAGCAGAGGAGACTAGAGATCACACCTGGACTGT  400

seq1  ACAGTTCAAGTCCCGCCTACAGTATAAAACTACCTTTTTTCCATTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAAGTCCCGCCTACAGTATAAAACTACCTTTTTTCCATTCTAGC  450

seq1  CATAGTCCCACCCCTGTCCTCTCTCCCACAGTTCCTCATTGCATCCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCCCACCCCTGTCCTCTCTCCCACAGTTCCTCATTGCATCCCTGT  500

seq1  CTCGAAAAACCAAAATAAAAAAAAAAAAAAACCAAACCAACAAACAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAACCAAAATAAAAAAAAAAAAAAACCAAACCAACAAACAAAAA  550

seq1  AATTAAAGTGCCTTTAATTCCAGCACTTGGGAGGCAGATGCAGAATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTGCCTTTAATTCCAGCACTTGGGAGGCAGATGCAGAATCTCT  600

seq1  GAGTTCTAGGACAGCCAGGGGGCCACAGAGAGAAACAGTCTCAGAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGGACAGCCAGGGGGCCACAGAGAGAAACAGTCTCAGAAAAAC  650

seq1  AAAAACTCTCACAGGCTTTGTTGTTTCACATTTTTTTGGTTTTGTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCTCACAGGCTTTGTTGTTTCACATTTTTTTGGTTTTGTTTTTG  700

seq1  TTTTCAAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  750

seq1  TTGTAGACCAGGCTGGCCTCGAACTGAGAAATCCGCCTGCCTCTGCCTCC  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTGAGAAATCCG-CTGCCTCTGCCTCC  799

seq1  TGAGTGCTGGGATTAAAGGCATGTGCCATCACACCCGGCTTGGTTTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  TGAGTGCTGGGATTAAAGGCATGTGCCATCACACCCGGCT--GGTTTCTG  847

seq1  TTGTTGTTTTTTTTTTTTTTTTTTTTT  877
      |||||||||||||||||||||||||||
seq2  TTGTTGTTTTTTTTTTTTTTTTTTTTT  874

seq1: chr4_129330248_129331338
seq2: B6Ng01-023D12.g_70_1146 (reverse)

seq1  GCCCTGAACTAGCTGAGCCTTCTGCCTCTAACTCACAAGTGCTGGGATTA  50
      |||||||||||||| |||  |||| |||| |||||| |||||| ||||||
seq2  GCCCTGAACTAGCT-AGC--TCTG-CTCT-ACTCAC-AGTGCT-GGATTA  43

seq1  CAGTGTGTGCCACACGGCTGAAAAGGCTAACGTGAGTTTAGCATGAGGTG  100
      |||||| ||||||||||||||||||||| ||||||| ||||||||| |||
seq2  CAGTGT-TGCCACACGGCTGAAAAGGCT-ACGTGAG-TTAGCATGA-GTG  89

seq1  AAGGCCTAGAAGCATTGGTGACCCCACAGCTTTTAGTGTCTCAAAAGGAT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGCCTAGAAGCA-TGGTGACCCCACAGCTTTTAGTGTCTCAAAAGGAT  138

seq1  CATGGACCAGACTTCATTCCTCACAACACTGTTGCAGCAAACAAACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACCAGACTTCATTCCTCACAACACTGTTGCAGCAAACAAACCCAG  188

seq1  TCATTCCATTTCGCTTTCTTTGCTCAAGCAGCAGCGGGATGATTTGTTTC  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATTCCATTTCGCTTTC-TTGCTCAAGCAGCAGCGGGATGATTTGTTTC  237

seq1  TAATTTGCTTAAGAGAAGAAGGAACTATGAGAATACAGAGACTGCCAGTG  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAA-TTGCTTAAGAGAAGAAGGAACTATGAGAATACAGAGACTGCCAGTG  286

seq1  CTACAACCACTTAATTTAAAGTCACACTTTCTCTGCTAGACCATGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACCACTTAATTTAAAGTCACACTTTCTCTGCTAGACCATGCAGTT  336

seq1  ACCCAGGAAGACTTTGGTCTACAGCGCTCTCTCTGTTCTCCCACAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAAGACTTTGGTCTACAGCGCTCTCTCTGTTCTCCCACAGCTGA  386

seq1  CCTAAGCTAAGGTCCCACCCCTCTTCTTCCTCACCTGGGTCTGGATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTAAGGTCCCACCCCTCTTCTTCCTCACCTGGGTCTGGATGTCA  436

seq1  TCCCCAGTGACAATATTACCCACAGCTCTCAAGGCAGGAGACGCCACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTGACAATATTACCCACAGCTCTCAAGGCAGGAGACGCCACTTT  486

seq1  GTAATCGTTGTGCCTACAGAGGAAGAGCAGCTATCAGTGGAGAGACAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCGTTGTGCCTACAGAGGAAGAGCAGCTATCAGTGGAGAGACAGCG  536

seq1  CATCAGTCGGTCCTGCCGACTGCCGAAAACCAACACAGGTTCTTCTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCGGTCCTGCCGACTGCCGAAAACCAACACAGGTTCTTCTGCCC  586

seq1  ATATTCCTTGCAGCTCCAGACCTTTGTAGGTCAGCTATCTGCTGTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTGCAGCTCCAGACCTTTGTAGGTCAGCTATCTGCTGTTTGTA  636

seq1  GATTTTTTGTTTTTTTGCTTTGTTTTGTGAGACAGTCTTTATACTGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTGTTTTTTTGCTTTGTTTTGTGAGACAGTCTTTATACTGCAGC  686

seq1  CCACCCTGTCCTTGAATTTGTCATTCTCCTGTCTCCCAAAGGCTGGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGTCCTTGAATTTGTCATTCTCCTGTCTCCCAAAGGCTGGGATT  736

seq1  ACAGCCACACCACCATGCCTTTGGCTAGAGGTCTTTGAACTTGGTAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACACCACCATGCCTTTGGCTAGAGGTCTTTGAACTTGGTAAAGC  786

seq1  TAAGGAAACTTTCACCCTCTTGAACTCAAACCACTCACATCAGAAGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAACTTTCACCCTCTTGAACTCAAACCACTCACATCAGAAGCTCT  836

seq1  ACCAATCTCCGGCAGACTCCAGAGTCTATGACTGCCTGGATCTTCTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCTCCGGCAGACTCCAGAGTCTATGACTGCCTGGATCTTCTCATT  886

seq1  GGGGCCATCAGACAGGTAGGAGAGGGCCCAGCAAGCATCTGCCAGCAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATCAGACAGGTAGGAGAGGGCCCAGCAAGCATCTGCCAGCAAGT  936

seq1  CTGAGTCACTGCTGAAGAGCAGTCGGGACAATACAGGCAAACAAGGAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCACTGCTGAAGAGCAGTCGGGACAATACAGGCAAACAAGGAGAG  986

seq1  ACCTGTTGGAAGCAGAGGAGGACTGATCATAGGGCTACATCAGCTCTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGGAAGCAGAGGAGGACTGATCATAGGGCTACATCAGCTCTCTC  1036

seq1  ACCAAGCCTATCATGGCTTACCCCTTCCCAACACGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTATCATGGCTTACCCCTTCCCAACACGGAATTC  1077