BAC Information

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BAC

Clone NameB6Ng01-023J17
Chromosome4 (Build37)
Map Location 119,737,795 - 119,932,661
singlet/doubletdoublet
Overlap geneHivep3, Edn2
Upstream geneOTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneFoxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023J17.bB6Ng01-023J17.g
ACCDH855480DH855481
length511981
definitionDH855480|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J17, 5' end.DH855481|Mus musculus domesticus DNA, BAC clone: B6Ng01-023J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,737,795 - 119,738,306)(119,931,678 - 119,932,661)
sequence
gaattccctggtgccttgattaggaattcctgccttcccatgtctccgcc
cctcagtctccacctcacctctgctaaaggacacaacaatgtctcacaag
gacccaggcctctgatatattaacctgtttcccaggcttgtccttccatg
cccaatcctaagtcaccttcataccctgccctgtcataaagcccctgccc
ggaggcatggaagggtgtcaggtctggcctctcatgattacctggagagt
tccaaactctaggggctgagtacataggcaagtgaggtccctgggctcct
atatgtgtttgcatgcatatctccatcttgggcgttaggagtgggctgtg
acatgggtgggggtgtggcattggaagctctttgggtaagagttaaatcc
tagggtgttttgtctgctacaagctatgtcatcatcatcatccaaggagc
tggtagggctgaaggagagagcacctgctttcaaaaaggaatgaaggaag
gaagggaggga
gaattcctccctccattccgcacttgttcctagagaaggaccctcacaag
gggccttggcaggcagctttgatgctccttgaaaatgggggtggggatag
cctcctgccagcgagaggctggcactgagtgagcgggggccgcgccaact
ggcgatcaatttcatgcacatcgtaaacctaagtgctttctggagagtct
ggcagattgcacataaagtcccccttctgtccctagcacacgggtgggcg
tgtgaggcaagggctcaccctggctacaggagacccaggtaacctgatcc
cccagtgggaggtatccttggggacctgggggattctctcatcaaggcca
gcactgctgggaacagctggagctgggagccgtgcgtgcatgaacctgga
ctctgccagactctgctgctcattggtggaatgaccttgggcagtcggct
tcgctgacccttagtctcctcatttgtgaagtaggatgacatgagattaa
ttgagctctgtctttgcgatgagctgtcacagagctgaagaatctcaagg
tccacacactcacaacacagccttggactctcctcactaggaacacccac
tgctagcaggtttctggccatggcggtgagtaccctgtggcatataaagc
tctttctccacctgtcctctgttctctctctccaaacacctgtttattca
tcactatccctgagcatgctttctgaagcccccacccccaacctgtctct
ctcacccatgtcacaagaagggacagcctctggctgtcttctagctcctg
tgctatttgggtgtcagaacagcttacaacctgcatcaaggcaggagttg
tacaaaagagggaagggaggctgtgttgatgctgggcttcatgtcttgtg
attctccacaagagttttgtgtgtatcctctctaaactccctcaggaatc
agttttctcagttctgtctactgttagctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119737795_119738306
seq2: B6Ng01-023J17.b_38_549

seq1  GGAATTCCCTGGTGCCTTGATTAGGAATTCCAGCCTTCCCATGTCTCCGC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGAATTCCCTGGTGCCTTGATTAGGAATTCCTGCCTTCCCATGTCTCCGC  50

seq1  CCCTCAGTCTCCACCTCACCTCTGCTAAAGGACACAACAATGTCTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTCTCCACCTCACCTCTGCTAAAGGACACAACAATGTCTCACAA  100

seq1  GGACCCAGGCCTCTGATATATTAACCTGTTTCCCAGGCTTGTCCTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGGCCTCTGATATATTAACCTGTTTCCCAGGCTTGTCCTTCCAT  150

seq1  GCCCAATCCTAAGTCACCTTCATACCCTGCCCTGTCATAAAGCCCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATCCTAAGTCACCTTCATACCCTGCCCTGTCATAAAGCCCCTGCC  200

seq1  CGGAGGCATGGAAGGGTGTCAGGTCTGGCCTCTCATGATTACCTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCATGGAAGGGTGTCAGGTCTGGCCTCTCATGATTACCTGGAGAG  250

seq1  TTCCAAACTCTAGGGGCTGAGTACATAGGCAAGTGAGGTCCCTGGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACTCTAGGGGCTGAGTACATAGGCAAGTGAGGTCCCTGGGCTCC  300

seq1  TATATGTGTTTGCATGCATATCTCCATCTTGGGCGTTAGGAGTGGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTTTGCATGCATATCTCCATCTTGGGCGTTAGGAGTGGGCTGT  350

seq1  GACATGGGTGGGGGTGTGGCATTGGAAGCTCTTTGGGTAAGAGTTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGTGGGGGTGTGGCATTGGAAGCTCTTTGGGTAAGAGTTAAATC  400

seq1  CTAGGGTGTTTTGTCTGCTACAAGCTATGTCATCATCATCATCCAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTGTTTTGTCTGCTACAAGCTATGTCATCATCATCATCCAAGGAG  450

seq1  CTGGTAGGGCTGAAGGAGAGAGCACCTGCTTTCAAAAAGGAAGGAAGGAA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGGTAGGGCTGAAGGAGAGAGCACCTGCTTTCAAAAAGGAATGAAGGAA  500

seq1  GGAAGGGAGGGA  512
      ||||||||||||
seq2  GGAAGGGAGGGA  512

seq1: chr4_119931678_119932661
seq2: B6Ng01-023J17.g_70_1050 (reverse)

seq1  AGGGCTAACAG-AGGCAGAAGCTGAGAAAACTGATTTCCTGAGGGTGTCT  49
      || |||||||| || ||||| ||||||||||||| |||||||||| || |
seq2  AGAGCTAACAGTAGACAGAA-CTGAGAAAACTGA-TTCCTGAGGGAGT-T  47

seq1  GGGAGAGGATACACACAAAACTCCTTGTGGAGGATCAC-AGGCATGAAGC  98
        |||||||||||||||||||| ||||||||| ||||| || ||||||||
seq2  TAGAGAGGATACACACAAAACT-CTTGTGGAGAATCACAAGACATGAAGC  96

seq1  CCAAGCATCAACACAGCCTCCC-TCCCTCTTCTGTTACAACTCCTGCCTT  147
      || ||||||||||||||||||| |||||||| || |||||||||||||||
seq2  CC-AGCATCAACACAGCCTCCCTTCCCTCTTTTG-TACAACTCCTGCCTT  144

seq1  GATGCAGGTTGTAGGCTGTTCTGACACCCAAATAGCACAGGAGCTAGAAG  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGTTGTAAGCTGTTCTGACACCCAAATAGCACAGGAGCTAGAAG  194

seq1  ACAGCCAGAGGCTGTCCCTTCTTGTGACATGGGTGAGAGAGACAGGTTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGAGGCTGTCCCTTCTTGTGACATGGGTGAGAGAGACAGGTTGG  244

seq1  GGGTGGGGGCTTCAGAAAGCATGCTCAGGGATAGTGATGAATAAACAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGCTTCAGAAAGCATGCTCAGGGATAGTGATGAATAAACAGGT  294

seq1  GTTTGGAGAGAGAGAACAGAGGACAGGTGGAGAAAGAGCTTTATATGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGAGAGAGAACAGAGGACAGGTGGAGAAAGAGCTTTATATGCCA  344

seq1  CAGGGTACTCACCGCCATGGCCAGAAACCTGCTAGCAGTGGGTGTTCCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGGGTACTCACCGCCATGGCCAGAAACCTGCTAGCAGTGGGTGTTCCTA  394

seq1  GTGAGGAGAGTCCAAGGCTGTGTTGTGAGTGTGTGGACCTTGAGATTCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGAGTCCAAGGCTGTGTTGTGAGTGTGTGGACCTTGAGATTCTT  444

seq1  CAGCTCTGTGACAGCTCATCGCAAAGACAGAGCTCAATTAATCTCATGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTGACAGCTCATCGCAAAGACAGAGCTCAATTAATCTCATGTC  494

seq1  ATCCTACTTCACAAATGAGGAGACTAAGGGTCAGCGAAGCCGACTGCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTTCACAAATGAGGAGACTAAGGGTCAGCGAAGCCGACTGCCCA  544

seq1  AGGTCATTCCACCAATGAGCAGCAGAGTCTGGCAGAGTCCAGGTTCATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTCCACCAATGAGCAGCAGAGTCTGGCAGAGTCCAGGTTCATGC  594

seq1  ACGCACGGCTCCCAGCTCCAGCTGTTCCCAGCAGTGCTGGCCTTGATGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACGGCTCCCAGCTCCAGCTGTTCCCAGCAGTGCTGGCCTTGATGAG  644

seq1  AGAATCCCCCAGGTCCCCAAGGATACCTCCCACTGGGGGATCAGGTTACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCCCAGGTCCCCAAGGATACCTCCCACTGGGGGATCAGGTTACC  694

seq1  TGGGTCTCCTGTAGCCAGGGTGAGCCCTTGCCTCACACGCCCACCCGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCTGTAGCCAGGGTGAGCCCTTGCCTCACACGCCCACCCGTGT  744

seq1  GCTAGGGACAGAAGGGGGACTTTATGTGCAATCTGCCAGACTCTCCAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGACAGAAGGGGGACTTTATGTGCAATCTGCCAGACTCTCCAGAA  794

seq1  AGCACTTAGGTTTACGATGTGCATGAAATTGATCGCCAGTTGGCGCGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAGGTTTACGATGTGCATGAAATTGATCGCCAGTTGGCGCGGCC  844

seq1  CCCGCTCACTCAGTGCCAGCCTCTCGCTGGCAGGAGGCTATCCCCACCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTCACTCAGTGCCAGCCTCTCGCTGGCAGGAGGCTATCCCCACCCC  894

seq1  CATTTTCAAGGAGCATCAAAGCTGCCTGCCAAGGCCCCTTGTGAGGGTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAAGGAGCATCAAAGCTGCCTGCCAAGGCCCCTTGTGAGGGTCC  944

seq1  TTCTCTAGGAACAAGTGCGGAATGGAGGGAGGAATTC  984
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGAACAAGTGCGGAATGGAGGGAGGAATTC  981