BAC Information

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BAC

Clone NameB6Ng01-024C08
Chromosome4 (Build37)12 (Build37)
Map Location 63,546,833 - 63,547,81526,110,329 - 26,110,765
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8
Downstream geneRpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024C08.bB6Ng01-024C08.g
ACCDH855869DH855870
length963522
definitionDH855869|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C08, 5' end.DH855870|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,546,833 - 63,547,815)(26,110,329 - 26,110,765)
sequence
gaattctggggctgggcatgtgaccacacaggtacatgaccacatgggca
catgaccatctggccacttgttctctgcattttgaccagttgcattttac
agtagtggcttctctatggttagactctggggcaagatgtaccacttcgt
ttgtttaaatgtttcattttatttttgtgtggagtgtgtgcctatatgtg
gccatgtgaacttgagtgcaagtgcccatggaggctgaaagtgtcagatg
ccctggagctggaattaatgaaggttgtgatccacttgacatgggtgcag
ggaactgaacccagaacctgcaagagaagcaagtgctctgaatcactgag
ttatctctccagcatccaaccttcccttcctgaaacattttttgagctaa
cacgacaggactgcatagaatctcaggagtgggggctggttatcagaaaa
ccccttctgagatccagttatctttcatgtgcttttattagcaactgggg
ttttattttggaaatgctggctgtggtctaaaatgtgttatcatttcctg
ccaccatgccagcttctgagtatgtcttttttgaacaaagccaggcatct
tcgtgaaatgaaacagaaatctcttgagagcaagagattgactatggctg
ctagtctttactgtctgatcttttgatgatggaaacactgtctgttctaa
atcctatgattcctgtgaaatctttagcacacaattttacctgggaggtg
tcatagaattatgatgagaaatcggtgagtatcggcacatgatttagggt
gtacataaagatatccatttttttaccaagggagggcctaaggaagattt
ttatgtaaaaaaagggaggcaggggagaaaaacctctttagggctggtaa
aatgaaagctttctgacttattttggtaaatggctcctggtctaaaaaaa
tacttagggggcc
tttaagttagtgcaatatggatgacaaaaggagagagcatgaaaggggga
gggagagagggagagacataaaagggggggggtagaataaaccaggctta
aggcctgagtgtgctggacctcaggcagggcctccctcctcccagggcat
gattcaggaatcttacaaacaaaactattaatttttgtttacaggagtga
gatcctagctcccagcatccctgggatatagagtattattttatcaaata
taatcctgccagatgcacctcaggaaacaccctgcaatgttatttaaatg
ccttggcaaccatgtaaagaaaatggcttcagagctcacaaagactctct
ctatggcttttgcaaagacaataatgtacagctctcccttgagaagccca
catgtgcttcttatgtgtgccttcttgtgcttccatgtgcaccttgttcc
ttctctgatcacccctttgtatatgtgtatgtatatgtatacatatatgt
atgtgtgtatgtgtatgtggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63546833_63547815
seq2: B6Ng01-024C08.b_32_993

seq1  GAATTCATGGGGCTGGGCATGTGACCACACAGGTACATGACCACATGGGC  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTC-TGGGGCTGGGCATGTGACCACACAGGTACATGACCACATGGGC  49

seq1  ACATGACCATCTGGCCACTTGTTCTCTGCATTTTGACCAGTTGCATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCATCTGGCCACTTGTTCTCTGCATTTTGACCAGTTGCATTTTA  99

seq1  CAGTAGTGGCTTCTCTATGGTTAGACTCTGGGGCAAGATGTACCACTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGGCTTCTCTATGGTTAGACTCTGGGGCAAGATGTACCACTTCG  149

seq1  TTTGTTTAAATGTTTCATTTTATTTTTGTGTGGAGTGTGTGCCTATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAAATGTTTCATTTTATTTTTGTGTGGAGTGTGTGCCTATATGT  199

seq1  GGCCATGTGAACTTGAGTGCAGGTGCCCATGGAGGCTGAAAGTGTCAGAT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCATGTGAACTTGAGTGCAAGTGCCCATGGAGGCTGAAAGTGTCAGAT  249

seq1  GCCCTGGAGCTGGAATTAATGAAGGTTGTGATCCACTTGACATGGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGCTGGAATTAATGAAGGTTGTGATCCACTTGACATGGGTGCA  299

seq1  GGGAACTGAACCCAGAACCTGCAAGAGAAGCAAGTGCTCTGAATCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGAACCCAGAACCTGCAAGAGAAGCAAGTGCTCTGAATCACTGA  349

seq1  GTTATCTCTCCAGCATCCAACCTTCCCTTCCTGAAACATTTTTTGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCTCCAGCATCCAACCTTCCCTTCCTGAAACATTTTTTGAGCTA  399

seq1  ACACGACAGGACTGCATAGAATCTCAGGAGTGGGGGCTGGTTATCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACAGGACTGCATAGAATCTCAGGAGTGGGGGCTGGTTATCAGAAA  449

seq1  ACCCCTTCTGAGATCCAGTTATCTTTCATGTGCTTTTATTAGCAACTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCCCTTCTGAGATCCAGTTATCTTTCATGTGCTTTTATTAGCAACTGGG  499

seq1  GTTTTATTTTGGAAATGCTGGCTGTGGTCTAAAATGTGTTATCATTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTGGAAATGCTGGCTGTGGTCTAAAATGTGTTATCATTTCCT  549

seq1  GCCACCATGCCAGCTTCTGAGTATGTCTTTTTATGAACAAAGCCAGGCAT  600
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCACCATGCCAGCTTCTGAGTATGTCTTTTT-TGAACAAAGCCAGGCAT  598

seq1  CTTCGTGAAATGAAACAGAAATCTCTTGAGAGCAAGAGATTGACTATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTGAAATGAAACAGAAATCTCTTGAGAGCAAGAGATTGACTATGGC  648

seq1  TGCTAGTCTTTACTGTCTGATC-TTGGAGGATGGAAACACTGTCTGTTCT  699
      |||||||||||||||||||||| || || |||||||||||||||||||||
seq2  TGCTAGTCTTTACTGTCTGATCTTTTGATGATGGAAACACTGTCTGTTCT  698

seq1  AGAATCCTATGATTCCTGTG-AATCTTTAGCACACAATTTTACCTGGGTG  748
      | |||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  A-AATCCTATGATTCCTGTGAAATCTTTAGCACACAATTTTACCTGGGAG  747

seq1  GTGTCATAGAATTATGATGAGAAATTCGGTGAGTTATCGGCACATGATTT  798
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTGTCATAGAATTATGATGAGAAA-TCGGTGAG-TATCGGCACATGATTT  795

seq1  A-GGTGTACATAAAGAGATCAATATTTTTTAACCAAGGGAGGGCCTAAGG  847
      | |||||||||||||| |||   ||||||| |||||||||||||||||||
seq2  AGGGTGTACATAAAGATATC--CATTTTTTTACCAAGGGAGGGCCTAAGG  843

seq1  AAGATTTATATGTAAGAGAGAAGGGAGGCAGGGGGAGAAAAACCCACATT  897
      ||||||| ||||||  | | |||||||||| |||||||||||||    ||
seq2  AAGATTTTTATGTA--AAAAAAGGGAGGCA-GGGGAGAAAAACC--TCTT  888

seq1  CAGGGCATGTAGAAAATGGAAAGCTCTCGTGAGCATATTTTGGGTAAATG  947
       |||||  ||  ||||| ||||||| || ||| | |||||| ||||||||
seq2  TAGGGCTGGT--AAAAT-GAAAGCTTTC-TGA-CTTATTTT-GGTAAATG  932

seq1  GCTTACATGGCATTAAAAAAAATTAGTTTAGGGGGC  983
      |||  | |||  | |||||| |     |||||||||
seq2  GCT--CCTGGTCTAAAAAAATA----CTTAGGGGGC  962

seq1: chr12_26110329_26110765
seq2: B6Ng01-024C08.g_159_595 (reverse)

seq1  ATCCACATACACATACACACATACATATATGTATACATATACATACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATACACATACACACATACATATATGTATACATATACATACACAT  50

seq1  ATACAAAGGGGTGATCAGAGAAGGAACAAGGTGCACATGGAAGCACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGGGGTGATCAGAGAAGGAACAAGGTGCACATGGAAGCACAAGA  100

seq1  AGGCACACATAAGAAGCACATGTGGGCTTCTCAAGGGAGAGCTGTACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACATAAGAAGCACATGTGGGCTTCTCAAGGGAGAGCTGTACATT  150

seq1  ATTGTCTTTGCAAAAGCCATAGAGAGAGTCTTTGTGAGCTCTGAAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTTGCAAAAGCCATAGAGAGAGTCTTTGTGAGCTCTGAAGCCAT  200

seq1  TTTCTTTACATGGTTGCCAAGGCATTTAAATAACATTGCAGGGTGTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTACATGGTTGCCAAGGCATTTAAATAACATTGCAGGGTGTTTCC  250

seq1  TGAGGTGCATCTGGCAGGATTATATTTGATAAAATAATACTCTATATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCATCTGGCAGGATTATATTTGATAAAATAATACTCTATATCCC  300

seq1  AGGGATGCTGGGAGCTAGGATCTCACTCCTGTAAACAAAAATTAATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTGGGAGCTAGGATCTCACTCCTGTAAACAAAAATTAATAGTT  350

seq1  TTGTTTGTAAGATTCCTGAATCATGCCCTGGGAGGAGGGAGGCCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTAAGATTCCTGAATCATGCCCTGGGAGGAGGGAGGCCCTGCCT  400

seq1  GAGGTCCAGCACACTCAGGCCTTAAGCCTGGTTTATT  437
      |||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAGCACACTCAGGCCTTAAGCCTGGTTTATT  437