BAC Information

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BAC

Clone NameB6Ng01-024N13
Chromosome4 (Build37)
Map Location 143,809,672 - 143,977,361
singlet/doubletdoublet
Overlap genePramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
Upstream geneLOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
Downstream genePramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024N13.bB6Ng01-024N13.g
ACCDH856361DH856362
length5671,064
definitionDH856361|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N13, 5' end.DH856362|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,809,672 - 143,810,244)(143,976,291 - 143,977,361)
sequence
tatcccaggtggttcccattagaccttttttgtttgcattcctctgtttt
atgtaagattctggttacctcatttgtaccttgcaaatatgtcacccaac
tcccttattgtcttctgcataaaaagtctgatgctcgatttgaaaattac
actcaaattccacacgacctcttctgtgtgcatctgtctgtcacccatcc
tacgctttgcccacccacgatgagagacccgttccacacagacaaaggag
cccagagggtctgcggcaattattatttagatttatttcacttttttatg
tgttttgcctgcatctatgtatctctatgtgatatatttgtttctgcaca
agcgagagtcaattctattagaatcagagttatagaaatttgtgagcagc
catgtgagtggtagaaacttaatctgggtcctcttggaagagcaaattgt
gcttttaaccactaagaaattttttcagtccttatttctatttaagagaa
gtggttgggtttgtgtttctgttgttattgatgctgttgttttggtgtga
ttgggtgtgtgagtgtg
gaattcatgaaatcttaggcaaatggatggatctggagggtatcatcctg
agtaaggtaaccaaatcacaaaagtacacacataacatgcactcacaggg
ccagattttaaccagcttaatgacctaccagcaaacatgccactgtctgt
gacctacaacctagagcaaagatttctttatttctttgggaccaaggatc
caatccagggctttgaaatacagagtctgttcaccatcatacagctgtgt
ccaagccacttttctcaagccataccatttctgccatgccagctggtata
aaatgtgcactatataccagaaagccttcccctagatgcaggccacatca
ttcagtagacacttccccaagatgttaaaacaagactccatgagacttag
attttgttttgttttgggcatgaatatatggtaccactttgtagatcagg
ctggtctagaactcacaaagatctacttggcccttcttctcacttaggta
ctgggattaaagacctgctctatcacatcaggcctaagacttggttttgt
tttacactatttaaacttacatttttatttctgttaaactgaacatgata
cagcccactattaattacagtcactcagtaacaagaagttacttgaacaa
caagaagtatgatccccatatgtcttaagataaatgagctggtttgtggt
ggctcagggtggcaggatgtgcttgaagatgaggaaggtagatgaaggta
agagatggctcagtggggaaaagtactgctgtcaaacctgagtccaatcc
tagaacccacatgctgaaaggaggaacctgcccctgcagttccattgtgc
acagtaaggcaggcacagtgttcctcccagagcccaccccaacaatagat
agtaataattaattaataaattaatgacaaataaatgtattttttttaaa
gtgaatggagaggtattttaaatcagacacagctctcacaacatttggaa
gaaattcaagaagctgggttagaaatgcacggtttccttgacaggatggt
taacctgggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143809672_143810244
seq2: B6Ng01-024N13.b_43_615

seq1  GAATTCTATCCCAGGTGGTTCCCATTAGACCTTTTTTGTTTGCATTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCAGGTGGTTCCCATTAGACCTTTTTTGTTTGCATTCCTC  50

seq1  TGTTTTATGTAAGATTCTGGTTACCTCATTTGTACCTTGCAAATATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTAAGATTCTGGTTACCTCATTTGTACCTTGCAAATATGTCA  100

seq1  CCCAACTCCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATTTGAA  150

seq1  AATTACACTCAAATTCCACACGACCTCTTCTGTGTGCATCTGTCTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACTCAAATTCCACACGACCTCTTCTGTGTGCATCTGTCTGTCAC  200

seq1  CCATCCTACGCTTTGCCCACCCACGATGAGAGACCCGTTCCACACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTACGCTTTGCCCACCCACGATGAGAGACCCGTTCCACACAGACA  250

seq1  AAGGAGCCCAGAGGGTCTGCGGCAATTATTATTTAGATTTATTTCACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCAGAGGGTCTGCGGCAATTATTATTTAGATTTATTTCACTTT  300

seq1  TTTATGTGTTTTGCCTGCATCTATGTATCTCTATGTGATATATTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTTTTGCCTGCATCTATGTATCTCTATGTGATATATTTGTTTC  350

seq1  TGCACAAGCGAGAGTCAATTCTATTAGAATCAGAGTTATAGAAATTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGCGAGAGTCAATTCTATTAGAATCAGAGTTATAGAAATTTGTG  400

seq1  AGCAGCCATGTGAGTGGTAGAAACTTAATCTGGGTCCTCTTGGAAGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCATGTGAGTGGTAGAAACTTAATCTGGGTCCTCTTGGAAGAGCA  450

seq1  AATTGTGCTTTTAACCACTAAGAAATTTTTTCAGTCCTTATTTCTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCTTTTAACCACTAAGAAATTTTTTCAGTCCTTATTTCTATTTA  500

seq1  AGAGAAGTGGTTGGGTTTGTGTTTCTGTTGTTATTGATGCTGTTGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTGGTTGGGTTTGTGTTTCTGTTGTTATTGATGCTGTTGTTTTG  550

seq1  GTGTGATTGGGTGTGTGAGTGTG  573
      |||||||||||||||||||||||
seq2  GTGTGATTGGGTGTGTGAGTGTG  573

seq1: chr4_143976291_143977361
seq2: B6Ng01-024N13.g_71_1134 (reverse)

seq1  TCCCTCCCAGTGTTAACCATCCTGTCAAGGAAA-CGTGCATTTTCTAAAC  49
      |||||||||| |||||||||||||||||||||| |||||| ||||| |||
seq2  TCCCTCCCAG-GTTAACCATCCTGTCAAGGAAACCGTGCA-TTTCT-AAC  47

seq1  CCAGCTTCCTGAATTGTTCTCCAAATGTGTGTGAGAGCTGTGTCTGATTT  99
      |||||||| |||||| |  ||||||||| |||||||||||||||||||||
seq2  CCAGCTTCTTGAATT-TCTTCCAAATGT-TGTGAGAGCTGTGTCTGATTT  95

seq1  TAAATTCCTCT-CATTCACTTTTGAAAAAAATTACATTTATTTGTTCATT  148
       |||| ||||| ||||||||||  ||||||| |||||||||||| |||||
seq2  AAAATACCTCTCCATTCACTTT--AAAAAAAATACATTTATTTG-TCATT  142

seq1  TATTTATTTATTTATTTATACCTATCTATTTGTTGGGGTGGGGCTCTGGG  198
       ||||| ||| ||| ||||  ||||||| |||||||||| ||||||||||
seq2  AATTTA-TTAATTAATTATTACTATCTA-TTGTTGGGGT-GGGCTCTGGG  189

seq1  AGG-ACACTGTGCCTGCCTTACTGTGCAC-ATGGAACTTGCAGGGGCAGG  246
      ||| ||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AGGAACACTGTGCCTGCCTTACTGTGCACAATGGAAC-TGCAGGGGCAGG  238

seq1  TTCCTCCTTTCAGCATGTGGGTTCTAGGATTGGACTCAGGTTTGACAGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTTCAGCATGTGGGTTCTAGGATTGGACTCAGGTTTGACAGCA  288

seq1  GTACTTTTCCCCACTGAGCCATCTCTTACCTTCATCTACCTTCCTCATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTCCCCACTGAGCCATCTCTTACCTTCATCTACCTTCCTCATCT  338

seq1  TCAAGCACATCCTGCCACCCTGAGCCACCAC-AACCAGCTCATTTATCTT  395
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAAGCACATCCTGCCACCCTGAGCCACCACAAACCAGCTCATTTATCTT  388

seq1  AAGACATATGGGGATCATACTTCTTGTTGTTCAAGTAACTTCTTGTTACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATATGGGGATCATACTTCTTGTTGTTCAAGTAACTTCTTGTTACT  438

seq1  GAGTGACTGTAATTAATAGTGGGCTGTATCATGTTCAGTTTAACAGAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTGTAATTAATAGTGGGCTGTATCATGTTCAGTTTAACAGAAAT  488

seq1  AAAAATGTAAGTTTAAATAGTGTAAAACAAAACCAAGTCTTAGGCCTGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAAGTTTAAATAGTGTAAAACAAAACCAAGTCTTAGGCCTGAT  538

seq1  GTGATAGAGCAGGTCTTTAATCCCAGTACCTAAGTGAGAAGAAGGGCCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAGCAGGTCTTTAATCCCAGTACCTAAGTGAGAAGAAGGGCCAA  588

seq1  GTAGATCTTTGTGAGTTCTAGACCAGCCTGATCTACAAAGTGGTACCATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTTTGTGAGTTCTAGACCAGCCTGATCTACAAAGTGGTACCATA  638

seq1  TATTCATGCCCAAAACAAAACAAAATCTAAGTCTCATGGAGTCTTGTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGCCCAAAACAAAACAAAATCTAAGTCTCATGGAGTCTTGTTTT  688

seq1  AACATCTTGGGGAAGTGTCTACTGAATGATGTGGCCTGCATCTAGGGGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTGGGGAAGTGTCTACTGAATGATGTGGCCTGCATCTAGGGGAA  738

seq1  GGCTTTCTGGTATATAGTGCACATTTTATACCAGCTGGCATGGCAGAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGGTATATAGTGCACATTTTATACCAGCTGGCATGGCAGAAAT  788

seq1  GGTATGGCTTGAGAAAAGTGGCTTGGACACAGCTGTATGATGGTGAACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGCTTGAGAAAAGTGGCTTGGACACAGCTGTATGATGGTGAACAG  838

seq1  ACTCTGTATTTCAAAGCCCTGGATTGGATCCTTGGTCCCAAAGAAATAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATTTCAAAGCCCTGGATTGGATCCTTGGTCCCAAAGAAATAAA  888

seq1  GAAATCTTTGCTCTAGGTTGTAGGTCACAGACAGTGGCATGTTTGCTGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTGCTCTAGGTTGTAGGTCACAGACAGTGGCATGTTTGCTGGT  938

seq1  AGGTCATTAAGCTGGTTAAAATCTGGCCCTGTGAGTGCATGTTATGTGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTAAGCTGGTTAAAATCTGGCCCTGTGAGTGCATGTTATGTGTG  988

seq1  TACTTTTGTGATTTGGTTACCTTACTCAGGATGATACCCTCCAGATCCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTGATTTGGTTACCTTACTCAGGATGATACCCTCCAGATCCAT  1038

seq1  CCATTTGCCTAAGATTTCATGAATTC  1071
      ||||||||||||||||||||||||||
seq2  CCATTTGCCTAAGATTTCATGAATTC  1064