BAC Information

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BAC

Clone NameB6Ng01-024O19
Chromosome4 (Build37)
Map Location 87,916,695 - 88,030,903
singlet/doubletdoublet
Overlap geneBC057079
Upstream geneMllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024O19.bB6Ng01-024O19.g
ACCDH856416DH856417
length779610
definitionDH856416|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O19, 5' end.DH856417|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,030,125 - 88,030,903)(87,916,695 - 87,917,303)
sequence
gaattcaggcagacaacattataggatggcttgtttgtagaaagtaccaa
atactttgcctctgaccagaaatgacaatcaatacagttgttgaaaagaa
ttgattctgaaacaccagatactaaaagctggtagagtactctatcttag
gagaaaaagcctcaccaacatcagagatagcaaaaccaaaaataccctaa
gcccttgcaccaggaaggccaccaagcagagtggctgccagcaaaggtca
gaacctgatgagaaaggcaacccgatagggtttggcccagagtgggtggg
agattggtttcacataggtggactgatcaaatgagcacacaggctgagaa
taatgagcaggtttaccacagtccagaacacagttgtggagagaggcggg
gagtataatggtattgaagaactgcaaatatgagtatgaatttgtaacac
agacagcttagacacaggtaaagctaaagatacactttgttgtaaaaata
ggcaaaatataaaaaagagaaagagaacagttcctaattgacatttcaga
aaacagtgataattatcccaggagaaaggctctgccccagaccttggttt
ctaaatacctttctctgaaaaacaaaacaaaacaaaaaaataggttacct
ggacctataccccaggcttataacaataacttagatgaggtacattaata
aacacccaaccagtgactgaaaacagaaagaacagtaatatatatattac
tgttatattatataatatatatatgtgtg
gaattctgtaacccacctgctttcccagcatgcatgcttttttgtgccag
cacatggtttttcatggttggcttgctatcttgtggtgcatctgcatgac
ttccgcccatttcttctccaggtggctgtcaagcctcaccatctcttgac
actcaatggcaggattcctaccccctgacattctttccttcttagattcc
tctttcagctcttttatatccaacataattctagtcgtgccagataactt
ggaatcacgtgttctacttcctttctgatacggcttgataaatttttcag
cggactgaactgcgttttatgtggtgtttccttctggttttgtgtactgc
ttcagagatgtgtatgtcgctttgtgggtatctgttaaggatttatatct
tttaaaattagtattaattaatattttgaaactgataattttcaatgcca
ccgttgtatttttgtaagtgtgcttgttctcatgttttgaccatagcatt
ccttttctggtatatatttgtcagattcagatcatgtagtagattccaaa
actgaggatatcttttctcttcttctcttctcttctcttctcttctcttc
tcttatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88030125_88030903
seq2: B6Ng01-024O19.b_48_826 (reverse)

seq1  CACACATATATATATTATATAATATAACAGTAATATATATATTACTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATATTATATAATATAACAGTAATATATATATTACTGTTC  50

seq1  TTTCTGTTTTCAGTCACTGGTTGGGTGTTTATTAATGTACCTCATCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTTCAGTCACTGGTTGGGTGTTTATTAATGTACCTCATCTAAG  100

seq1  TTATTGTTATAAGCCTGGGGTATAGGTCCAGGTAACCTATTTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTATAAGCCTGGGGTATAGGTCCAGGTAACCTATTTTTTTGTTT  150

seq1  TGTTTTGTTTTTCAGAGAAAGGTATTTAGAAACCAAGGTCTGGGGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTCAGAGAAAGGTATTTAGAAACCAAGGTCTGGGGCAGAG  200

seq1  CCTTTCTCCTGGGATAATTATCACTGTTTTCTGAAATGTCAATTAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCTGGGATAATTATCACTGTTTTCTGAAATGTCAATTAGGAAC  250

seq1  TGTTCTCTTTCTCTTTTTTATATTTTGCCTATTTTTACAACAAAGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTTCTCTTTTTTATATTTTGCCTATTTTTACAACAAAGTGTAT  300

seq1  CTTTAGCTTTACCTGTGTCTAAGCTGTCTGTGTTACAAATTCATACTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTTTACCTGTGTCTAAGCTGTCTGTGTTACAAATTCATACTCAT  350

seq1  ATTTGCAGTTCTTCAATACCATTATACTCCCCGCCTCTCTCCACAACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGTTCTTCAATACCATTATACTCCCCGCCTCTCTCCACAACTGT  400

seq1  GTTCTGGACTGTGGTAAACCTGCTCATTATTCTCAGCCTGTGTGCTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGACTGTGGTAAACCTGCTCATTATTCTCAGCCTGTGTGCTCATT  450

seq1  TGATCAGTCCACCTATGTGAAACCAATCTCCCACCCACTCTGGGCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTCCACCTATGTGAAACCAATCTCCCACCCACTCTGGGCCAAAC  500

seq1  CCTATCGGGTTGCCTTTCTCATCAGGTTCTGACCTTTGCTGGCAGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCGGGTTGCCTTTCTCATCAGGTTCTGACCTTTGCTGGCAGCCACT  550

seq1  CTGCTTGGTGGCCTTCCTGGTGCAAGGGCTTAGGGTATTTTTGGTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGTGGCCTTCCTGGTGCAAGGGCTTAGGGTATTTTTGGTTTTGC  600

seq1  TATCTCTGATGTTGGTGAGGCTTTTTCTCCTAAGATAGAGTACTCTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGATGTTGGTGAGGCTTTTTCTCCTAAGATAGAGTACTCTACCA  650

seq1  GCTTTTAGTATCTGGTGTTTCAGAATCAATTCTTTTCAACAACTGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGTATCTGGTGTTTCAGAATCAATTCTTTTCAACAACTGTATTG  700

seq1  ATTGTCATTTCTGGTCAGAGGCAAAGTATTTGGTACTTTCTACAAACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATTTCTGGTCAGAGGCAAAGTATTTGGTACTTTCTACAAACAAG  750

seq1  CCATCCTATAATGTTGTCTGCCTGAATTC  779
      |||||||||||||||||||||||||||||
seq2  CCATCCTATAATGTTGTCTGCCTGAATTC  779

seq1: chr4_87916695_87917303
seq2: B6Ng01-024O19.g_70_678

seq1  GAATTCTGTAACCCACCTGCTTTCCCAGCATGCATGCTTTTTTGTGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACCCACCTGCTTTCCCAGCATGCATGCTTTTTTGTGCCAG  50

seq1  CACATGGTTTTTCATGGTTGGCTTGCTATCTTGTGGTGCATCTGCATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTTTTCATGGTTGGCTTGCTATCTTGTGGTGCATCTGCATGAC  100

seq1  TTCCGCCCATTTCTTCTCCAGGTGGCTGTCAAGCCTCACCATCTCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCCCATTTCTTCTCCAGGTGGCTGTCAAGCCTCACCATCTCTTGAC  150

seq1  ACTCAATGGCAGGATTCCTACCCCCTGACATTCTTTCCTTCTTAGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGGCAGGATTCCTACCCCCTGACATTCTTTCCTTCTTAGATTCC  200

seq1  TCTTTCAGCTCTTTTATATCCAACATAATTCTAGTCGTGCCAGATAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGCTCTTTTATATCCAACATAATTCTAGTCGTGCCAGATAACTT  250

seq1  GGAATCACGTGTTCTACTTCCTTTCTGATACGGCTTGATAAATTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACGTGTTCTACTTCCTTTCTGATACGGCTTGATAAATTTTTCAG  300

seq1  CGGACTGAACTGCGTTTTATGTGGTGTTTCCTTCTGGTTTTGTGTACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTGAACTGCGTTTTATGTGGTGTTTCCTTCTGGTTTTGTGTACTGC  350

seq1  TTCAGAGATGTGTATGTCGCTTTGTGGGTATCTGTTAAGGATTTATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATGTGTATGTCGCTTTGTGGGTATCTGTTAAGGATTTATATCT  400

seq1  TTTAAAATTAGTATTAATTAATATTTTGAAACTGATAATTTTCAATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTAGTATTAATTAATATTTTGAAACTGATAATTTTCAATGCCA  450

seq1  CCGTTGTATTTTTGTAAGTGTGCTTGTTCTCATGTTTTGACCATAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTATTTTTGTAAGTGTGCTTGTTCTCATGTTTTGACCATAGCATT  500

seq1  CCTTTTCTGGTATATATTTGTCAGATTCAGATCATGTAGTAGATTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGGTATATATTTGTCAGATTCAGATCATGTAGTAGATTCCAAA  550

seq1  ACTGAGGATATCTTTTCTCTTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATATCTTTTCTCTTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC  600

seq1  TCTTCTCTT  609
      |||| ||||
seq2  TCTTATCTT  609