BAC Information

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BAC

Clone NameB6Ng01-025D21
Chromosome4 (Build37)
Map Location 27,873,952 - 28,002,498
singlet/doubletdoublet
Overlap geneTpm3-rs2
Upstream geneLOC100040691
Downstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025D21.bB6Ng01-025D21.g
ACCDH856651DH856652
length1,1321,123
definitionDH856651|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D21, 5' end.DH856652|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,001,346 - 28,002,498)(27,873,952 - 27,875,089)
sequence
gaattccagtgtaaatggtatttgttataaagtctgcagatgtagagtaa
tatagacattcatgttaattatgttttaagcttggatacatatgaccttg
tgggcaaggtctcattcctttcctaatatattacctaagaatttcaaaca
aaggtgtccatatcttttactgtaaattatcctgcttgtctttgtttcag
tttccatttctgtgaataaacaccatgaccaaggaaacttagagtttcag
agtttcggtccattatcatcatgatgggaaaaacggaagcatccaggcag
acatgttgctggagaaagagctgagagttctgcatcttgaacagaagtaa
gccagaaagggactcttaaaatccctccccaacagggacacactttctcc
accatggtcaaacttgtgtaacaagaccacacctcataatcatgccactc
tctagactaagcatacttaaactaccacactacctttctgcagtcatgac
agactacacgcacattatcattgcagtctgctgagatgtacctcagaaac
cacccatgtaaaatcacatacattactattgtgaaggaaacaaaatgaga
ctgtttgaatcccacactacagcctctgatgttttataatttctttctta
gcccctattactcttaacattcatgcttaaagtctatattaaaatatctc
tataaaactgtctttatactgactggtcctgaaataccgttctggtcaaa
gctaggaaatcctggttggttctattaaaagtccctaaaagatttgatga
attccttaggctgttaaaataacagatgagatgagcctcctatacctgac
aatgctgatagtatattattaaacttgtgtttacctatattttaatggaa
tttttaaaagtgtttttgataagggtacatttcaaaatttcttgtcaatg
catagtacatatgttaaaaacaaacaacattaaaataaagtagctgataa
ttttaacaaatgtttcaaagtggttgtactagttttcctcccactacatg
agacagctacccctactcctatgcttgcagcatgtgctgtattggagctt
tgatcttagtcattctgcgtaagacgatttcc
gaattcaaggagtgaatatgtgaatatgttccgagaaatacaataaacct
aaccaaaactgtccaaaaatggatttgttaatagaaagagaactgaacaa
ataataatatatccatgtcctgtcagcttagttgtgcagagtttattacc
aaatgtatgcacagagatgctatgataaagaatcaaagtcctgtagaaaa
tttagttcaacagagagttaaaagaatatgccagagtagaattaaatagc
tattataggactacatttgttttcagagacaatagaggaaaaaagagaag
aaaatgataaaaagaatttattttctattcaatgcacttatacattcagt
ttgtacattctctggcaacctgagacatccagttttaggattgtaattca
atagccatttttagcaatataaagcctcgtgaacactgtcctctaaagac
atcatatccttgtcagggtatgaaaggccactacttctaaagaacaagaa
aggcaagttcattggtctgaatctgctacccttaagttaaacactttctc
acttgaatttcttgtaggaaattcatacatgatattcagctgatctcatg
aataccaaactggtcagttgcagatgcttgtaatgattttgaaatgacaa
ataaccaattttcagaaatattataatctaattattataaatttgttttt
attagatattttctttatttacattcaaatgttatccccttttctggttc
ccctccaaaacccccctatctgatccccctccccttgcttctatgagggt
gtacctcaacccacccactcttgctgccccatcctggcattcccctatac
tggtgcctctcctcccatggatgtccaattaagccatgctctgctacata
tgtgactggagtcaagggtcgctccatgtgtacccaccagcaatggagga
gtgttccctttctccacatcctctctagcatctgttgttacctgagtttt
ttatcttagccattctgactgtctgaagtgaatctcagtagtttgatttg
cttttcctgatgatacgatgttgaacattcttgatgctttctagtcctca
aattcctcagtgagaattctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28001346_28002498
seq2: B6Ng01-025D21.b_45_1176 (reverse)

seq1  GGAAATTCGTCTTCTACCTGTCAGAATGACTAAGATCAAAAGCTCAAATA  50
      ||||| ||||||  |||    |||||||||||||||| ||||||| ||| 
seq2  GGAAA-TCGTCT--TAC---GCAGAATGACTAAGATC-AAAGCTCCAAT-  42

seq1  ACAGCACATGCTGGCAAGCATAGGGAGTAAGGGGTAGCTTGTCTTCATTG  100
      |||||||||||| ||||||||| ||||| ||||||||| |||| ||||  
seq2  ACAGCACATGCT-GCAAGCATA-GGAGT-AGGGGTAGC-TGTC-TCAT--  85

seq1  TTAGTGGGAGGGAAAACTAGTACAACCACTTTGGAAACCAATTTGTTAAA  150
       |||||||| |||||||||||||||||||||| |||||  ||||||||||
seq2  GTAGTGGGA-GGAAAACTAGTACAACCACTTT-GAAAC--ATTTGTTAAA  131

seq1  ATTATTCAGCTACTTTATTTTAATGTTGTTTGTTTTTTAACATATGTACT  200
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTA-TCAGCTACTTTATTTTAATGTTGTTTG-TTTTTAACATATGTACT  179

seq1  ATGCATTGACAAGAAATTTTGAAATGTACCCTTATCAAAAACACTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGACAAGAAATTTTGAAATGTACCCTTATCAAAAACACTTTTAA  229

seq1  AAATTCCATTAAAATATAGGTAAACACAAGTTTAATAATATACTATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATTAAAATATAGGTAAACACAAGTTTAATAATATACTATCAGC  279

seq1  ATTGTCAGGTATAGGAGGCTCATCTCATCTGTTATTTTAACAGCCTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGGTATAGGAGGCTCATCTCATCTGTTATTTTAACAGCCTAAGG  329

seq1  AATTCATCAAATCTTTTAGGGACTTTTAATAGAACCAACCAGGATTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCAAATCTTTTAGGGACTTTTAATAGAACCAACCAGGATTTCCT  379

seq1  AGCTTTGACCAGAACGGTATTTCAGGACCAGTCAGTATAAAGACAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGACCAGAACGGTATTTCAGGACCAGTCAGTATAAAGACAGTTTT  429

seq1  ATAGAGATATTTTAATATAGACTTTAAGCATGAATGTTAAGAGTAATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATATTTTAATATAGACTTTAAGCATGAATGTTAAGAGTAATAGG  479

seq1  GGCTAAGAAAGAAATTATAAAACATCAGAGGCTGTAGTGTGGGATTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGAAAGAAATTATAAAACATCAGAGGCTGTAGTGTGGGATTCAAA  529

seq1  CAGTCTCATTTTGTTTCCTTCACAATAGTAATGTATGTGATTTTACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCATTTTGTTTCCTTCACAATAGTAATGTATGTGATTTTACATGG  579

seq1  GTGGTTTCTGAGGTACATCTCAGCAGACTGCAATGATAATGTGCGTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTGAGGTACATCTCAGCAGACTGCAATGATAATGTGCGTGTAG  629

seq1  TCTGTCATGACTGCAGAAAGGTAGTGTGGTAGTTTAAGTATGCTTAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGACTGCAGAAAGGTAGTGTGGTAGTTTAAGTATGCTTAGTCT  679

seq1  AGAGAGTGGCATGATTATGAGGTGTGGTCTTGTTACACAAGTTTGACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGGCATGATTATGAGGTGTGGTCTTGTTACACAAGTTTGACCAT  729

seq1  GGTGGAGAAAGTGTGTCCCTGTTGGGGAGGGATTTTAAGAGTCCCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAAAGTGTGTCCCTGTTGGGGAGGGATTTTAAGAGTCCCTTTCT  779

seq1  GGCTTACTTCTGTTCAAGATGCAGAACTCTCAGCTCTTTCTCCAGCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTTCTGTTCAAGATGCAGAACTCTCAGCTCTTTCTCCAGCAACA  829

seq1  TGTCTGCCTGGATGCTTCCGTTTTTCCCATCATGATGATAATGGACCGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTGGATGCTTCCGTTTTTCCCATCATGATGATAATGGACCGAA  879

seq1  ACTCTGAAACTCTAAGTTTCCTTGGTCATGGTGTTTATTCACAGAAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAACTCTAAGTTTCCTTGGTCATGGTGTTTATTCACAGAAATGG  929

seq1  AAACTGAAACAAAGACAAGCAGGATAATTTACAGTAAAAGATATGGACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAACAAAGACAAGCAGGATAATTTACAGTAAAAGATATGGACAC  979

seq1  CTTTGTTTGAAATTCTTAGGTAATATATTAGGAAAGGAATGAGACCTTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTGAAATTCTTAGGTAATATATTAGGAAAGGAATGAGACCTTGC  1029

seq1  CCACAAGGTCATATGTATCCAAGCTTAAAACATAATTAACATGAATGTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGTCATATGTATCCAAGCTTAAAACATAATTAACATGAATGTCT  1079

seq1  ATATTACTCTACATCTGCAGACTTTATAACAAATACCATTTACACTGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTCTACATCTGCAGACTTTATAACAAATACCATTTACACTGGAA  1129

seq1  TTC  1153
      |||
seq2  TTC  1132

seq1: chr4_27873952_27875089
seq2: B6Ng01-025D21.g_67_1189

seq1  GAATTCAAGGAGTGAATATGTGAATATGTTCCGAGAAATACAATAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGTGAATATGTGAATATGTTCCGAGAAATACAATAAACCT  50

seq1  AACCAAAACTGTCCAAAAATGGATTTGTTAATAGAAAGAGAACTGAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACTGTCCAAAAATGGATTTGTTAATAGAAAGAGAACTGAACAA  100

seq1  ATAATAATATATCCATGTCCTGTCAGCTTAGTTGTGCAGAGTTTATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATATATCCATGTCCTGTCAGCTTAGTTGTGCAGAGTTTATTACC  150

seq1  AAATGTATGCACAGAGATGCTATGATAAAGAATCAAAGTCCTGTAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGCACAGAGATGCTATGATAAAGAATCAAAGTCCTGTAGAAAA  200

seq1  TTTAGTTCAACAGAGAGTTAAAAGAATATGCCAGAGTAGAATTAAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCAACAGAGAGTTAAAAGAATATGCCAGAGTAGAATTAAATAGC  250

seq1  TATTATAGGACTACATTTGTTTTCAGAGACAATAGAGGAAAAAAGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGGACTACATTTGTTTTCAGAGACAATAGAGGAAAAAAGAGAAG  300

seq1  AAAATGATAAAAAGAATTTATTTTCTATTCAATGCACTTATACATTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAAAAAGAATTTATTTTCTATTCAATGCACTTATACATTCAGT  350

seq1  TTGTACATTCTCTGGCAACCTGAGACATCCAGTTTTAGGATTGTAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATTCTCTGGCAACCTGAGACATCCAGTTTTAGGATTGTAATTCA  400

seq1  ATAGCCATTTTTAGCAATATAAAGCCTCGTGAACACTGTCCTCTAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATTTTTAGCAATATAAAGCCTCGTGAACACTGTCCTCTAAAGAC  450

seq1  ATCATATCCTTGTCAGGGTATGAAAGGCCACTACTTCTAAAGAACAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCCTTGTCAGGGTATGAAAGGCCACTACTTCTAAAGAACAAGAA  500

seq1  AGGCAAGTTCATTGGTCTGAATCTGCTACCCTTAAGTTAAACACTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTCATTGGTCTGAATCTGCTACCCTTAAGTTAAACACTTTCTC  550

seq1  ACTTGAATTTCTTGTAGGAAATTCATACATGATATTCAGCTGATCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATTTCTTGTAGGAAATTCATACATGATATTCAGCTGATCTCATG  600

seq1  AATACCAAACTGGTCAGTTGCAGATGCTTGTAATGATTTTGAAATGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAACTGGTCAGTTGCAGATGCTTGTAATGATTTTGAAATGACAA  650

seq1  ATAACCAATTTTCAGAAATATTATAATCTAATTATTATAAATTTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAATTTTCAGAAATATTATAATCTAATTATTATAAATTTGTTTTT  700

seq1  ATTAGATATTTTCTTTATTTACATTCAAATGTTATCCCCTTTTCTGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATATTTTCTTTATTTACATTCAAATGTTATCCCCTTTTCTGGTTC  750

seq1  CCCTCCAAAACCCCCCTATCTGATCCCCCTCCCCTTGCTTCTATGAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAACCCCCCTATCTGATCCCCCTCCCCTTGCTTCTATGAGGGT  800

seq1  GTACCTCAACCCACCCACTCTTGCTGCCCCATCCTGGCATTCCCCTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCAACCCACCCACTCTTGCTGCCCCATCCTGGCATTCCCCTATAC  850

seq1  TGGTGCCTCTCCTCCCATGGATGTCCAATAAGGCCATGCTCTGCTACATA  900
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TGGTGCCTCTCCTCCCATGGATGTCCAATTAAGCCATGCTCTGCTACATA  900

seq1  TGTGACTGGAGTCAAGGGTCGCTCCATGTGTACCCACCAGCAATGGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGGAGTCAAGGGTCGCTCCATGTGTACCCACCAGCAATGGAGGA  950

seq1  GTGTTTCCCTTTCTCCACATCCTCTCTAGCATCTGTTGTTACCTGAGTTT  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTG-TTCCCTTTCTCCACATCCTCTCTAGCATCTGTTGTTACCTGAGTTT  999

seq1  TTTATCTTAGCCATTCTGACTGTTCTGAAGTGGAATCTCAGGGTAGTTTT  1050
      |||||||||||||||||||||| |||||||| ||||||||  |||| |||
seq2  TTTATCTTAGCCATTCTGACTG-TCTGAAGT-GAATCTCA--GTAG-TTT  1044

seq1  GATTTGCTTTTCCCTGATGAATACGGATGTTGAACATTTCTTTGAGTGCT  1100
      ||||||||||| ||||||| |||| |||||||||||||   |||| ||||
seq2  GATTTGCTTTT-CCTGATG-ATAC-GATGTTGAACATT--CTTGA-TGCT  1088

seq1  TCTCAGTCCTTCAAATTTCCTCAGTTGAGAATTCTGTT  1138
      |   ||||| ||||| |||||||| |||||||||||||
seq2  TTCTAGTCC-TCAAA-TTCCTCAG-TGAGAATTCTGTT  1123