BAC Information

Click to search

BAC

Clone NameB6Ng01-025H06
Chromosome4 (Build37)
Map Location 121,603,298 - 121,604,365
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
Downstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H06.bB6Ng01-025H06.g
ACCDH856800DH856801
length9261,056
definitionDH856800|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H06, 5' end.DH856801|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttaagctgggtcattaagacttcacagtgcttcccattaatg
ccatataaggcaatcctttgctacatatccagctggagccatgcaccccc
accccctgtgtactctttgatggttattttattccctgggagctttgggg
gtggagatggtaagttgttcttcctatgaggttgcaaacatattcagctc
cttcagtccttgctctaactacccattgggttcaaacacacagtctgatg
tttagctgcactgatccctatctgtattggtcagactcttccagagcctc
taaggggacagctatatcaggctcctgtcagcaagtacttcttggcatca
gcaataccactgctaggcatatacccaaaagatgctacaacatataacaa
gaacatatgctccactatgttcatagcagccttatgtactatgttccaga
agctggcaacaacctaaatgtccctcaagagagtaatggatacagaaatg
tggtacatttacaaaatgcagtattactcagctattaaaattaatgactt
catgaaattcttaggcaaattgatggaattagaaaatatcatcctgagtg
aggtaacccagtgtcaaaagaacacacacacatgttatgtactcaatgat
aagtgaatatttaaccaaaaaaaaagacttgacccatccagcaggtccag
ttatttgagggtctcaaggggaccttctcttaagaaccaaatggggggag
ggagagacagaaaccaagtgcgagaaactacaagtaaacagtctgagtag
catcaaggtctcactgtatcagcaaggctcaggcttaaatgcagaagcaa
aagatgaatttcttctcacatgagggatggggcatcagaaaattttcttt
ggcaattacatggggaagctggaagt
gaattccagaacatttccccaactgagagtcaagggaagagctgcagaga
agatccaagttgaattgtagagcaacgtttcattcgcgttgcttactcgt
gttggacagcagatggcgcgcccgcctgcctgaacgccgggcaggtagca
ctctaagaacccggtggcgcgcgagggggcgtggcgcagtgcctctcacc
acctcatcggagaaacagcttccaagtgtgcatggaggaaggacgccaga
ttgcaggtggctaggagcagcctcgggggcccccctctgtattccttcct
agcgttgactgtagatgcggcatagcggtggagagatgcgcgtccctcag
ggtgcttggatgcggtgtgcgagcagagctcttggcaataagcacaaacc
acagaaacctgactgcaaatacttccacatgcaaaggaggaaactgaaac
cttcctgcatcatttaaaaggcacgaaagctggagatgtagttcagtggt
aaactcttgtctagcttatgtgagtgaggactaggttcaattccctgtac
tggcaaattcaaataaaataaaaccaaacgaaaagcatccaaatcaatca
atcaatcaatcaatcaatcattcaataacagtgaactccccatcaccagg
gctctaatttctgggccagaattctgcctgattttctgaaggccccatat
gctccatggaccccaggtaagaagtaagcctatatctgccaaatccctta
taagacaacctaataattataaactacactacattctctgggctctttat
tcccgcccaaaatgttggcagaatgtatagttcccttggagaccatgcca
attatggaccacaaaaagggcttggcactaaaaattccagaggttattaa
gtcaataacacctcagaggaaacactggtaggactgaagtctcagtggac
aacaaagtctcagaccctaagtagaagacacaaagaaaacagaagtgtgg
gggattgaaaaacatccaaggttcagcaaacttaacttgaaagaatccac
tgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121603298_121604365
seq2: B6Ng01-025H06.g_69_1124

seq1  GAATTCCAGAACATTTCCCCAACTGAGAGTCAAGGGAAGAGCTGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACATTTCCCCAACTGAGAGTCAAGGGAAGAGCTGCAGAGA  50

seq1  AGATCCAAGTTGAATTGTAGAGCAACGTTTCATTCGCGTTGCTTACTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGTTGAATTGTAGAGCAACGTTTCATTCGCGTTGCTTACTCGT  100

seq1  GTTGGACAGCAGATGGCGCGCCCGCCTGCCTGAACGCCGGGCAGGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACAGCAGATGGCGCGCCCGCCTGCCTGAACGCCGGGCAGGTAGCA  150

seq1  CTCTAAGAACCCGGTGGCGCGCGAGGGGGCGTGGCGCAGTGCCTCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGAACCCGGTGGCGCGCGAGGGGGCGTGGCGCAGTGCCTCTCACC  200

seq1  ACCTCATCGGAGAAACAGCTTCCAAGTGTGCATGGAGGAAGGACGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCGGAGAAACAGCTTCCAAGTGTGCATGGAGGAAGGACGCCAGA  250

seq1  TTGCAGGTGGCTAGGAGCAGCCTCGGGGGCCCCCCTCTGTATTCCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTGGCTAGGAGCAGCCTCGGGGGCCCCCCTCTGTATTCCTTCCT  300

seq1  AGCGTTGACTGTAGATGCGGCATAGCGGTGGAGAGATGCGCGTCCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGACTGTAGATGCGGCATAGCGGTGGAGAGATGCGCGTCCCTCAG  350

seq1  GGTGCTTGGATGCGGTGTGCGAGCAGAGCTCTTGGCAATAAGCACAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGGATGCGGTGTGCGAGCAGAGCTCTTGGCAATAAGCACAAACC  400

seq1  ACAGAAACCTGACTGCAAATACTTCCACATGCAAAGGAGGAAACTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACCTGACTGCAAATACTTCCACATGCAAAGGAGGAAACTGAAAC  450

seq1  CTTCCTGCATCATTTAAAAGGCACGAAAGCTGGAGATGTAGTTCAGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCATCATTTAAAAGGCACGAAAGCTGGAGATGTAGTTCAGTGGT  500

seq1  AAACTCTTGTCTAGCTTATGTGAGTGAGGACTAGGTTCAATTCCCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTGTCTAGCTTATGTGAGTGAGGACTAGGTTCAATTCCCTGTAC  550

seq1  TGGCAAATTCAAATAAAATAAAACCAAACGAAAAGCATCCAAATCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTCAAATAAAATAAAACCAAACGAAAAGCATCCAAATCAATCA  600

seq1  ATCAATCAATCAATCAATCATTCAATAACAGTGAACTCCCCATCACCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATCAATCAATCATTCAATAACAGTGAACTCCCCATCACCAGG  650

seq1  GCTCTAATTTCTGGGCCAGAATTCTGCCTGATTTTCTGAAGGCCCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATTTCTGGGCCAGAATTCTGCCTGATTTTCTGAAGGCCCCATAT  700

seq1  GCTCCATGGACCCCAGGTAAGAAGTAAGCCTATATCTGCCAAATCCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGGACCCCAGGTAAGAAGTAAGCCTATATCTGCCAAATCCCTTA  750

seq1  TAAGACAACCTAATAATTATAAACTACACTACATTCTCTGGGCTCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAACCTAATAATTATAAACTACACTACATTCTCTGGGCTCTTTAT  800

seq1  TCCCGCCCAAAATGTTGGCAGAATGTATAGTTCCC-TGGAGACCATGCCA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCCGCCCAAAATGTTGGCAGAATGTATAGTTCCCTTGGAGACCATGCCA  850

seq1  ATTATTGGACCACAAAAAGGGCATTGGCACTAAAAATTCCAGAGGTTATA  899
      |||| ||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ATTA-TGGACCACAAAAAGGGC-TTGGCACTAAAAATTCCAGAGGTTATT  898

seq1  AAGTCAATAACACCTCAGAGGAAACACTGGTAGAACTGAAGTCTCAGTGG  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGTCAATAACACCTCAGAGGAAACACTGGTAGGACTGAAGTCTCAGTGG  948

seq1  ACACCAAAGTCTCAGGACCCTAAGGTTAGAAGACCACAAAGAAAACAGAA  999
      ||| |||||||||| |||||||||  ||||||| ||||||||||||||||
seq2  ACAACAAAGTCTCA-GACCCTAAG--TAGAAGA-CACAAAGAAAACAGAA  994

seq1  GTGGTGGGGGGATATGAAAAACATCCAGGGTTCAGGCAGATCTTAAACTT  1049
      |||   ||||||| ||||||||||||| |||||| ||| | ||| |||||
seq2  GTG--TGGGGGAT-TGAAAAACATCCAAGGTTCA-GCA-AACTT-AACTT  1038

seq1  GAAGAGATCCACCTGCTTC  1068
      |||   ||||| |||||||
seq2  GAAAGAATCCA-CTGCTTC  1056