BAC Information

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BAC

Clone NameB6Ng01-025H18
Chromosome4 (Build37)
Map Location 50,826,374 - 50,927,653
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814, LOC384015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H18.bB6Ng01-025H18.g
ACCDH856820DH856821
length1,1381,129
definitionDH856820|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H18, 5' end.DH856821|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,926,495 - 50,927,653)(50,826,374 - 50,827,553)
sequence
gaattctactaacagatattttatataattattatagacatttacatttg
tctgacatgtaataacaaagcttacaagaaaaaaagaacctatataaatg
ataatttattaatagtcaaaaccaagtataatatactcatgtttcatcct
taatctaatttacttgcatcctcttaacatatgaatttaggcatatttta
tttccaagtgaacaaatgctgcatgtgtttggactacatgtgttaggaat
actgtcaaaggcacaaatttcagtgaggtagccaaatacaatcctgaaaa
gagcatgaatctctcattatataggacatatgataattcttatattacta
tagtgataatagtatagtaaataacagaggatgttttaacgttttctaag
cagcaaagccttagctgaaaggtgggtgactgccagacatgctcagagga
gcaaaattgaattagttttaatacagaaattggagaggaaaattgcttgt
gataaaatgaaaatattcactaacacaacattgtggaaatgcactgtcag
attttttttaaaatgaccctttcctgtaggttttagaattcaaacattag
tttagaaaagacatggcataatatatgtgtcttgtcaggaaaaaaaaaaa
aaaaaacatgttctgagaactaagaatccattatagtcttggcaaatgct
aggcatttaaatacattttaatgctgttcaaaggaaaaaaaagctcatgc
tgcggaagggattgcgtgtttctcagccttttaacattttctttaaatcc
tgtcaggaaagaatgggtaagaaataaatgataaatgcttctgatatgga
gggtcaggagataaaaatcagaaattggtttattgcattaattcaaagaa
gtgtttttttttccacaatttataaactcagattgaatttacattacatt
caacaccatttaacacctaggttgctatcagtaatattgatcttcatttc
ttactcatgtgaacatgctcactgctagttattgtgacatatgatatcac
atacattataagtgttaattattaagtaactcttagataacagagttgat
tggggaaaaccagaaatttgttatgttaataccttaaa
gaattctttgtttagttttgagacccatagttttgagacccattttttaa
tggggttatttgattttctctagtgttaacctcagtccactacacaaaga
cctttctctgatgagttgtgagagctgcactaatctacaactaggaggaa
acaaattgagaagacagtttcatactaagttcatttagtaaaagtatcag
cacagattcatctctgggaaagttctttctttaatgttctgagaaacctc
cgtattgactttcttaatatctgaactaatttgtatcctaccaagactat
aaagttcatttttcttttgtactccgtccaatatctgctgaatttctttt
tgtgttgatagacattatcattttggtgagatggtatcagctttcatcat
gagtacagtgcaaatatacaatacaagtccctctagatttaaaagagcta
attttgcacatcacaacataatagaaggaactgtttcaaagataatgttt
gtgtttctacttgcatgttgccaattcttgcattgattgacagtttcatt
ttatttatatatttatttgctcatactaaccttatcacatttcttcaaat
ctacctttcttattagaaattacttccttgtactttattctttctggtca
aaaggtgatatgctcttgctgaccaagtgaagtataaagcaaatttaaaa
aaatgtttctagtaggaaagtttaaaatttacaaattactggacaaaagt
actgaaatatgacctaaatccatgacaagtgatgtccatctattagactg
gagctaatgtaatactcatggaaattttcaacagtagaagtcatatccac
tgtcatattcaaacagtaagtctattaagtgaactcaaaaaatttaactt
gacagagtttagcatttatgtaagatactgataatctgggtcagagaagg
aatgaacattgaaatatatcatttcactctgactatctccccccacttaa
gtctccctagaaactgtcttcattttaatcatactagcttcgttccttta
aatccatgtgagtggattgagagaaaattagttaggatgcttcgcttcga
ggtaatttctcacttaccattcaacttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50926495_50927653
seq2: B6Ng01-025H18.b_44_1181 (reverse)

seq1  TTTAAGGTATTTTAAACAATAAACAAATTTCTGTTTTTCTCCCAATCAAC  50
      |||||||||||   ||||   |||||||||||| ||||| ||||||||||
seq2  TTTAAGGTATT---AACA--TAACAAATTTCTGGTTTTC-CCCAATCAAC  44

seq1  TTCTGTTAATTCCTATAGAGTTAACTATATAATTAAACAACTTAATAATG  100
       |||||||    ||| |||||| |||  ||||||||   |||| ||||||
seq2  -TCTGTTA---TCTA-AGAGTT-ACTTAATAATTAA--CACTT-ATAATG  85

seq1  TATGTGATATCAATTATGTCACAATAACTAGCAGTGAGCATGTTCACATG  150
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TATGTGATATCA--TATGTCACAATAACTAGCAGTGAGCATGTTCACATG  133

seq1  AGTAAGAAATGAAGATC-ATATTACTGATTAGCAAACCCTAGGTGTAAAA  199
      ||||||||||||||||| |||||||||| ||||||  ||||||||| |||
seq2  AGTAAGAAATGAAGATCAATATTACTGA-TAGCAA--CCTAGGTGTTAAA  180

seq1  TGGTGTTGATTGTAATGTAAATTTCAATCTGAGTTTATAAATTGTGGAAA  249
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TGGTGTTGAATGTAATGTAAA-TTCAATCTGAGTTTATAAATTGTGGAAA  229

seq1  AAAAAACACTTCTTTGAATTAATGCAATAAACCAATTTTCTGATTTTTAT  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAAACACTTCTTTGAATTAATGCAATAAACCAA-TTTCTGATTTTTAT  278

seq1  CTCCTGACCCTCCATATCAGAAGCATTTATCATTTATTTCTTACCCATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACCCTCCATATCAGAAGCATTTATCATTTATTTCTTACCCATTC  328

seq1  TTTCCTGACAGGATTTAAAGAAAATGTTAAAAGGCTGAGAAACACGCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACAGGATTTAAAGAAAATGTTAAAAGGCTGAGAAACACGCAAT  378

seq1  CCCTTCCGCAGCATGAGCTTTTTTTTCCTTTGAACAGCATTAAAATGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCGCAGCATGAGCTTTTTTTTCCTTTGAACAGCATTAAAATGTAT  428

seq1  TTAAATGCCTAGCATTTGCCAAGACTATAATGGATTCTTAGTTCTCAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCCTAGCATTTGCCAAGACTATAATGGATTCTTAGTTCTCAGAA  478

seq1  CATGTTTTTTTTTTTTTTTTTCCTGACAAGACACATATATTATGCCATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTTTTTTTTTTTTTCCTGACAAGACACATATATTATGCCATGT  528

seq1  CTTTTCTAAACTAATGTTTGAATTCTAAAACCTACAGGAAAGGGTCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAACTAATGTTTGAATTCTAAAACCTACAGGAAAGGGTCATTT  578

seq1  TAAAAAAAATCTGACAGTGCATTTCCACAATGTTGTGTTAGTGAATATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATCTGACAGTGCATTTCCACAATGTTGTGTTAGTGAATATTT  628

seq1  TCATTTTATCACAAGCAATTTTCCTCTCCAATTTCTGTATTAAAACTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATCACAAGCAATTTTCCTCTCCAATTTCTGTATTAAAACTAAT  678

seq1  TCAATTTTGCTCCTCTGAGCATGTCTGGCAGTCACCCACCTTTCAGCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTGCTCCTCTGAGCATGTCTGGCAGTCACCCACCTTTCAGCTAA  728

seq1  GGCTTTGCTGCTTAGAAAACGTTAAAACATCCTCTGTTATTTACTATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCTGCTTAGAAAACGTTAAAACATCCTCTGTTATTTACTATACT  778

seq1  ATTATCACTATAGTAATATAAGAATTATCATATGTCCTATATAATGAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTATAGTAATATAAGAATTATCATATGTCCTATATAATGAGAG  828

seq1  ATTCATGCTCTTTTCAGGATTGTATTTGGCTACCTCACTGAAATTTGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCTCTTTTCAGGATTGTATTTGGCTACCTCACTGAAATTTGTGC  878

seq1  CTTTGACAGTATTCCTAACACATGTAGTCCAAACACATGCAGCATTTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAGTATTCCTAACACATGTAGTCCAAACACATGCAGCATTTGTT  928

seq1  CACTTGGAAATAAAATATGCCTAAATTCATATGTTAAGAGGATGCAAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAAATAAAATATGCCTAAATTCATATGTTAAGAGGATGCAAGTA  978

seq1  AATTAGATTAAGGATGAAACATGAGTATATTATACTTGGTTTTGACTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTAAGGATGAAACATGAGTATATTATACTTGGTTTTGACTATT  1028

seq1  AATAAATTATCATTTATATAGGTTCTTTTTTTCTTGTAAGCTTTGTTATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATCATTTATATAGGTTCTTTTTTTCTTGTAAGCTTTGTTATT  1078

seq1  ACATGTCAGACAAATGTAAATGTCTATAATAATTATATAAAATATCTGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCAGACAAATGTAAATGTCTATAATAATTATATAAAATATCTGTT  1128

seq1  AGTAGAATTC  1159
      ||||||||||
seq2  AGTAGAATTC  1138

seq1: chr4_50826374_50827553
seq2: B6Ng01-025H18.g_68_1196

seq1  GAATTCTTTGTTTAGTTTTGAGACCCATAGTTTTGAGACCCATTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGTTTTGAGACCCATAGTTTTGAGACCCATTTTTTAA  50

seq1  TGGGGTTATTTGATTTTCTCTAGTGTTAACCTCAGTCCACTACACAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTATTTGATTTTCTCTAGTGTTAACCTCAGTCCACTACACAAAGA  100

seq1  CCTTTCTCTGATGAGTTGTGAGAGCTGCACTAATCTACAACTAGGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTGATGAGTTGTGAGAGCTGCACTAATCTACAACTAGGAGGAA  150

seq1  ACAAATTGAGAAGACAGTTTCATACTAAGTTCATTTAGTAAAAGTATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGAGAAGACAGTTTCATACTAAGTTCATTTAGTAAAAGTATCAG  200

seq1  CACAGATTCATCTCTGGGAAAGTTCTTTCTTTAATGTTCTGAGAAACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCATCTCTGGGAAAGTTCTTTCTTTAATGTTCTGAGAAACCTC  250

seq1  CGTATTGACTTTCTTAATATCTGAACTAATTTGTATCCTACCAAGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTGACTTTCTTAATATCTGAACTAATTTGTATCCTACCAAGACTAT  300

seq1  AAAGTTCATTTTTCTTTTGTACTCCGTCCAATATCTGCTGAATTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATTTTTCTTTTGTACTCCGTCCAATATCTGCTGAATTTCTTTT  350

seq1  TGTGTTGATAGACATTATCATTTTGGTGAGATGGTATCAGCTTTCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGATAGACATTATCATTTTGGTGAGATGGTATCAGCTTTCATCAT  400

seq1  GAGTACAGTGCAAATATACAATACAAGTCCCTCTAGATTTAAAAGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGTGCAAATATACAATACAAGTCCCTCTAGATTTAAAAGAGCTA  450

seq1  ATTTTGCACATCACAACATAATAGAAGGAACTGTTTCAAAGATAATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCACATCACAACATAATAGAAGGAACTGTTTCAAAGATAATGTTT  500

seq1  GTGTTTCTACTTGCATGTTGCCAATTCTTGCATTGATTGACAGTTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTACTTGCATGTTGCCAATTCTTGCATTGATTGACAGTTTCATT  550

seq1  TTATTTATATATTTATTTGCTCATACTAACCTTATCACATTTCTTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATATTTATTTGCTCATACTAACCTTATCACATTTCTTCAAAT  600

seq1  CTACCTTTCTTATTAGAAATTACTTCCTTGTACTTTATTCTTTCTGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTCTTATTAGAAATTACTTCCTTGTACTTTATTCTTTCTGGTCA  650

seq1  AAAGGTGATATGCTCTTGCTGACCAAGTGAAGTATAAAGCAAATTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATATGCTCTTGCTGACCAAGTGAAGTATAAAGCAAATTTAAAA  700

seq1  AAATGTTTCTAGTAGGAAAGTTTAAAATTTACAAATTACTGGACAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCTAGTAGGAAAGTTTAAAATTTACAAATTACTGGACAAAAGT  750

seq1  ACTGAAATATGACCTAAATCCATGACAAGTGATGTCCATCTATTAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATATGACCTAAATCCATGACAAGTGATGTCCATCTATTAGACTG  800

seq1  GAGCTAATGTAATACTCATGGAAATTTTCAACAGTAGAAGTCATATCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATGTAATACTCATGGAAATTTTCAACAGTAGAAGTCATATCCAC  850

seq1  TGTCATATTCAAACAAGTAAGTCTATTAAGTGAACTCAAAAAATTTAACT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTCATATTCAAAC-AGTAAGTCTATTAAGTGAACTCAAAAAATTTAACT  899

seq1  TGACAAGAGTTTAAGCATTTATGTAAAGATTACTTGATAATCTGGGTCAG  950
      |||| ||||||| ||||||||||| |||| ||| ||||||||||||||||
seq2  TGAC-AGAGTTT-AGCATTTATGT-AAGA-TAC-TGATAATCTGGGTCAG  944

seq1  AGAAAGGAAATGAAACAATTGGAAAATATATCATTTTCACTCTGACCTAT  1000
      ||||  | ||||||   ||||  |||||||||| ||||||||||| ||||
seq2  AGAA--GGAATGAA--CATTG--AAATATATCA-TTTCACTCTGA-CTAT  986

seq1  CTCCCCCCACTTAAGGTCTCCCCTAGAAAACTTGTCCTGTCCATTTATAA  1050
      |||||||||||||| |||| |||||||||   ||||   | ||||  | |
seq2  CTCCCCCCACTTAA-GTCT-CCCTAGAAA--CTGTC---TTCATT--TTA  1027

seq1  ATCATTACTAGCTATCGTTCTCTTTAAATCTCATGTGAGTTGGAATTTTG  1100
      |||| |||||||| |||||| ||||||||| |||||||| ||||    | 
seq2  ATCA-TACTAGCT-TCGTTC-CTTTAAATC-CATGTGAG-TGGA----TT  1068

seq1  GAGAGAAAATTATAGTTATGATTGGTTTTTGGCTTTTTGAGATGATATTT  1150
      ||||||||||  |||||| ||    |  || ||||     || | || ||
seq2  GAGAGAAAAT--TAGTTAGGA----TGCTTCGCTT----CGA-GGTAATT  1107

seq1  TCTTCACTTACTCCATTTTTCTCAACTTGG  1180
      || |||||||  ||||     |||||||||
seq2  TC-TCACTTA--CCAT-----TCAACTTGG  1129