BAC Information

Click to search

BAC

Clone NameB6Ng01-025K19
Chromosome4 (Build37)
Map Location 52,066,466 - 52,233,564
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666681, LOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025K19.bB6Ng01-025K19.g
ACCDH856948DH856949
length1,1201,028
definitionDH856948|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K19, 5' end.DH856949|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,232,444 - 52,233,564)(52,066,466 - 52,067,509)
sequence
gaattcccatccccttatacagtcatacagtgccacaactacgctgctcc
atcttctttcgcaagtcactccttttcttctccctgtctccttgatgatg
actttctctaatactttggacctccatactctttctctagagatctcctt
gccccatggcttcctgctgctgtgtgtctgtcctccatcctggcttcatt
taaacagcacggccttttccagtctctggtctcctcagcacatctgctga
gatttataccttgcctgacctcttttatccctgactccaataaaattgtt
ctcaagatttttttttaaaatcaaccattgtagaattaatgttcagtgct
agtgtatatttgcttatttacttacgtgctcacccatttttgtacactgg
acacagcattccaaaggaaaatgagtatacataagagcatacaactaaac
gaagcacataatcaactgtcctattgttggcaccagtgcagatattctta
atctttataaccacctgtcttaaaagctagaagttttgttgacactggca
ttaaatgtcaaaattcatgtttttaaaattgttgacagggcaaagaatca
cacaagcttcagtggaagagaagaaagaaaatacatatcattttagtaaa
ccagcatgggttagctagttgttgtcaggagacagtctttatctatgtag
agggaatttcaacagtggaattacttccttcagcttgggatttgagaatg
tctggaggcattttcttaattgttaattgatataggagggcaagcccact
gggggcaggggatatctatctctgggtagttaggcctaatctgtagccag
agaaagcaagactaagcagaattccttctcggcctctgctttagtttctg
cctccaggttttctgcctgattccctccgatggctaatgttctgtgattc
ttgagataaaataaagccttttctcttcaaattgcttttgatcatggcat
gtatcacacaagagaaactaccaaaaatggagtttcatagaaccacatgt
tcttgtaaatccctaaaggagaaagatggtggatggcttctttcggtttc
ttgttttccacttatgtaga
gaattctcaccagcaaggctccacaggcctgagggtctctttaatgtaaa
aagaagtgaaggagagagcttggggaaaggattttccttaatcctgcatg
gagctcatgactcttcagctaggacaggagacaaaggaggccaaggtcag
agcacgtcacttcagtaagtatctctcctacaagtaaaatgcagaaacaa
atacctactcacatccacaaacacttgctatccaaaacagccaatcagct
caatgtcttgaagtctttagttcctttgttgtctcgcctttccctgtcag
aggtgaatggatgttattctttggatatgcaatggctctcacacacacat
gagtggaacacttggtcatcagctggtggcaatgtttaaaaagctgtgga
gaggcttgattgagcacagggtctaactggtcaaaggctggaacgaaagt
ctgttaacaacaaatgctgtttcctttcaggttctgacctgggctactga
gacgtgccagccattcactctggttaccatggttttcaccacgattcttt
tgccaatatagactgtacctcttaagctatgagccaaaataaattcctcc
tccattttgggggtgggggtcaggtatgtgacagttaccaaaatgtcact
gggcccaatactacgataaccatcctcaaaaaactgagaagacctctaat
agtatgctttcaaaaaaatagtcttcactggctagactggctagactaaa
aaaatttcttgttctgtaattttaagattctactttctctttttctcttt
tctacctgtcttcttctacctctctttcttatcatcctttccttctctgg
tacctgctctgctctgcttcctcctcatcctcctcctccttttctctcat
cttcgtctcttctttttcatcccattttttcattccgtccggtttttaat
aaaggggctcccctcctcattgattatttattatttatactactaatttg
cttattttaatttattattattttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52232444_52233564
seq2: B6Ng01-025K19.b_45_1164 (reverse)

seq1  TCTACATAAGTGGAAATCCAGAGAACCGAAAGAAGCCAT-CACCATCTTT  49
      |||||||||||||||| | ||| |||||||||||||||| ||||||||||
seq2  TCTACATAAGTGGAAAACAAGA-AACCGAAAGAAGCCATCCACCATCTTT  49

seq1  CT-CTTTAGGGATTTAACAAGAACATGTGGTTCTATGAAACTCCATTTTT  98
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGGGATTT-ACAAGAACATGTGGTTCTATGAAACTCCATTTTT  98

seq1  TGGTTAGTTTCTCTTGTGTGATACATGCCATGATCAAAAGCAATTTGAAG  148
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GGTAGTTTCTCTTGTGTGATACATGCCATGATCAAAAGCAATTTGAAG  146

seq1  AGAAAAGGCTTTATTTTATCTCAAGAATCACAGAACATAAGCCATCGGAG  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAAAGGCTTTATTTTATCTCAAGAATCACAGAACATTAGCCATCGGAG  196

seq1  GGAATCAGGCAG-AAACCTGGAGGCAGAAACTAAAGCAGAGGCCGAGAAG  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGGCAGAAAACCTGGAGGCAGAAACTAAAGCAGAGGCCGAGAAG  246

seq1  GAATTCTGCTTAGTCTTGCTTTCTCTGGCTACAGATTAGGCCTAACTACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTAGTCTTGCTTTCTCTGGCTACAGATTAGGCCTAACTACC  296

seq1  CAGAGATAGATATCCCCTGCCCCCAGTGGGCTTGCCCTCCTATATCAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGATATCCCCTGCCCCCAGTGGGCTTGCCCTCCTATATCAATT  346

seq1  AACAATTAAGAAAATGCCTCCAGACATTCTCAAATCCCAAGCTGAAGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAAGAAAATGCCTCCAGACATTCTCAAATCCCAAGCTGAAGGAA  396

seq1  GTAATTCCACTGTTGAAATTCCCTCTACATAGATAAAGACTGTCTCCTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCACTGTTGAAATTCCCTCTACATAGATAAAGACTGTCTCCTGA  446

seq1  CAACAACTAGCTAACCCATGCTGGTTTACTAAAATGATATGTATTTTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTAGCTAACCCATGCTGGTTTACTAAAATGATATGTATTTTCTT  496

seq1  TCTTCTCTTCCACTGAAGCTTGTGTGATTCTTTGCCCTGTCAACAATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCCACTGAAGCTTGTGTGATTCTTTGCCCTGTCAACAATTTT  546

seq1  AAAAACATGAATTTTGACATTTAATGCCAGTGTCAACAAAACTTCTAGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGAATTTTGACATTTAATGCCAGTGTCAACAAAACTTCTAGCT  596

seq1  TTTAAGACAGGTGGTTATAAAGATTAAGAATATCTGCACTGGTGCCAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACAGGTGGTTATAAAGATTAAGAATATCTGCACTGGTGCCAACA  646

seq1  ATAGGACAGTTGATTATGTGCTTCGTTTAGTTGTATGCTCTTATGTATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACAGTTGATTATGTGCTTCGTTTAGTTGTATGCTCTTATGTATAC  696

seq1  TCATTTTCCTTTGGAATGCTGTGTCCAGTGTACAAAAATGGGTGAGCACG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCCTTTGGAATGCTGTGTCCAGTGTACAAAAATGGGTGAGCACG  746

seq1  TAAGTAAATAAGCAAATATACACTAGCACTGAACATTAATTCTACAATGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATAAGCAAATATACACTAGCACTGAACATTAATTCTACAATGG  796

seq1  TTGATTTTAAAAAAAAATCTTGAGAACAATTTTATTGGAGTCAGGGATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTAAAAAAAAATCTTGAGAACAATTTTATTGGAGTCAGGGATAA  846

seq1  AAGAGGTCAGGCAAGGTATAAATCTCAGCAGATGTGCTGAGGAGACCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCAGGCAAGGTATAAATCTCAGCAGATGTGCTGAGGAGACCAGA  896

seq1  GACTGGAAAAGGCCGTGCTGTTTAAATGAAGCCAGGATGGAGGACAGACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAAAGGCCGTGCTGTTTAAATGAAGCCAGGATGGAGGACAGACA  946

seq1  CACAGCAGCAGGAAGCCATGGGGCAAGGAGATCTCTAGAGAAAGAGTATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCAGGAAGCCATGGGGCAAGGAGATCTCTAGAGAAAGAGTATG  996

seq1  GAGGTCCAAAGTATTAGAGAAAGTCATCATCAAGGAGACAGGGAGAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAAAGTATTAGAGAAAGTCATCATCAAGGAGACAGGGAGAAGAA  1046

seq1  AAGGAGTGACTTGCGAAAGAAGATGGAGCAGCGTAGTTGTGGCACTGTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGACTTGCGAAAGAAGATGGAGCAGCGTAGTTGTGGCACTGTAT  1096

seq1  GACTGTATAAGGGGATGGGAATTC  1121
      ||||||||||||||||||||||||
seq2  GACTGTATAAGGGGATGGGAATTC  1120

seq1: chr4_52066466_52067509
seq2: B6Ng01-025K19.g_68_1095

seq1  GAATTCTCACCAGCAAGGCTCCACAGGCCTGAGGGTCTCTTTAATGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCAGCAAGGCTCCACAGGCCTGAGGGTCTCTTTAATGTAAA  50

seq1  AAGAAGTGAAGGAGAGAGCTTGGGGAAAGGATTTTCCTTAATCCTGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGAAGGAGAGAGCTTGGGGAAAGGATTTTCCTTAATCCTGCATG  100

seq1  GAGCTCATGACTCTTCAGCTAGGACAGGAGACAAAGGAGGCCAAGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATGACTCTTCAGCTAGGACAGGAGACAAAGGAGGCCAAGGTCAG  150

seq1  AGCACGTCACTTCAGTAAGTATCTCTCCTACAAGTAAAATGCAGAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTCACTTCAGTAAGTATCTCTCCTACAAGTAAAATGCAGAAACAA  200

seq1  ATACCTACTCACATCCACAAACACTTGCTATCCAAAACAGCCAATCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACTCACATCCACAAACACTTGCTATCCAAAACAGCCAATCAGCT  250

seq1  CAATGTCTTGAAGTCTTTAGTTCCTTTGTTGTCTCGCCTTTCCCTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTGAAGTCTTTAGTTCCTTTGTTGTCTCGCCTTTCCCTGTCAG  300

seq1  AGGTGAATGGATGTTATTCTTTGGATATGCAATGGCTCTCACACACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATGGATGTTATTCTTTGGATATGCAATGGCTCTCACACACACAT  350

seq1  GAGTGGAACACTTGGTCATCAGCTGGTGGCAATGTTTAAAAAGCTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAACACTTGGTCATCAGCTGGTGGCAATGTTTAAAAAGCTGTGGA  400

seq1  GAGGCTTGATTGAGCACAGGGTCTAACTGGTCAAAGGCTGGAACGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGATTGAGCACAGGGTCTAACTGGTCAAAGGCTGGAACGAAAGT  450

seq1  CTGTTAACAACAAATGCTGTTTCCTTTCAGGTTCTGACCTGGGCTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACAACAAATGCTGTTTCCTTTCAGGTTCTGACCTGGGCTACTGA  500

seq1  GACGTGCCAGCCATTCACTCTGGTTACCATGGTTTTCACCACGATTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCCAGCCATTCACTCTGGTTACCATGGTTTTCACCACGATTCTTT  550

seq1  TGCCAATATAGACTGTACCTCTTAAGCTATGAGCCAAAATAAATTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATATAGACTGTACCTCTTAAGCTATGAGCCAAAATAAATTCCTCC  600

seq1  TCCATTTTGGGGGTGGGGGTCAGGTATGTGACAGTTACCAAAATGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGGGGGTGGGGGTCAGGTATGTGACAGTTACCAAAATGTCACT  650

seq1  GGGCCCAATACTACGATAACCATCCTC-AAAAACTGAGAAGACCTCTAAT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGCCCAATACTACGATAACCATCCTCAAAAAACTGAGAAGACCTCTAAT  700

seq1  AGTATGCTTTCAAAAAAATAGTCTTCACTGGCTAGACTGGCTAGACTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTTTCAAAAAAATAGTCTTCACTGGCTAGACTGGCTAGACTAAA  750

seq1  AAAATTCTTTGTTCTGTTAATTTTAGGATTCTACTTTCTCTTTTTCTCTT  799
      ||||||  |||||||| |||||||| ||||||||||||||||||||||||
seq2  AAAATTTCTTGTTCTG-TAATTTTAAGATTCTACTTTCTCTTTTTCTCTT  799

seq1  TTCTACCTGTCTTCTTCTACCTCTC-TTCTTATCTTCC-TTCCTTCTCT-  846
      ||||||||||||||||||||||||| |||||||| ||| |||||||||| 
seq2  TTCTACCTGTCTTCTTCTACCTCTCTTTCTTATCATCCTTTCCTTCTCTG  849

seq1  GTACCTGCTTCTGCTTCTGCTTCTTCCTCTTCCTCCTCCTCCTTTTCTTC  896
      |||||||| ||||| |||||||| ||||| ||||||||||||||||||  
seq2  GTACCTGC-TCTGC-TCTGCTTCCTCCTCATCCTCCTCCTCCTTTTCT--  895

seq1  TTCATCTTCTTCTTCTTTCTTTTTCATTCTCATTTTTTTCATTCTGTCCT  946
       |||||||| |||   |||||||||| || || ||||||||||| |||| 
seq2  CTCATCTTCGTCT--CTTCTTTTTCA-TCCCA-TTTTTTCATTCCGTCC-  940

seq1  GTTTTTTAATAAATGGGCTTCTCCTTCTCACATTGATTACTTTATTATTT  996
      | ||||||||||| |||| || ||| ||  ||||||||| ||||||||||
seq2  GGTTTTTAATAAAGGGGC-TCCCCTCCT--CATTGATTA-TTTATTATTT  986

seq1  ATACTACTAATTTTGCTTTATTATTAATTTTATTTATTAATATTATTT  1044
      |||||||||| ||||| ||||| |||||||   ||||| || ||||||
seq2  ATACTACTAA-TTTGC-TTATT-TTAATTT--ATTATT-ATTTTATTT  1028