BAC Information

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BAC

Clone NameB6Ng01-025N04
Chromosome4 (Build37)
Map Location 101,416,358 - 101,546,623
singlet/doubletdoublet
Overlap geneLepr, B020004J07Rik
Upstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot
Downstream geneLOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b, Sgip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N04.bB6Ng01-025N04.g
ACCDH857047DH857048
length1,1391,117
definitionDH857047|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N04, 5' end.DH857048|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,416,358 - 101,417,502)(101,545,508 - 101,546,623)
sequence
gaattcaaagtaaggtcctcatgattgtatagcaagcactttacccactg
agccatctccctcagcctctacgattccatctcttcttcttcacatgtgt
cttagggttccatcactatgaagagacaccatggccacagcaactcctat
aaaggaaaacatttaattgaggctgtcttatagtttcagaggtttagtct
attatcgtcatggcaggaagcatggcaacatgcaggcagatatggtgctg
gaagatccaagagttctattctatatcttgatccacagacaagaaggaga
ccgtgggccatactgggtgtagcttgagcgtatatgacctcaaagcccac
acttccttcaataaggctatatgcctcctaatagtgccattccctatggc
caagcattcaaacccatgaatctgcgggggctgtaccttttcaaaccacc
ataaacactatatctcattctcatatctatgaacaagcttattcactttt
gaaggtaagtaataattaaatagatagtagcaaattccatatttgggtct
cctttccccttggcctgttagaaagtctgctgctcttggcaaacgctgtt
cttctagggggggatggcttgttttgtacagtttggcaatgctaaaatga
tggcttgctgcaaggtgaacttactatggctaggatgtggagaactaatc
tcactacatgggtcaagttgtttaacagtgttgttcggctcttaattctg
attccttttgtctacttattatattaattattagagaagagttgaacttt
tcatgagtagttatgaaatagcctatttcttcctattaggtacacacata
tgatatgtacttttggtgaccctcctccacagttttttttgatatgaatg
acttctttagcttggaagataattattgtattccattcaactttattgac
attaaggtagctctcaacttttattttgatttatctgaatagcatatctt
ttttctaaccaccttctttagtgaatttgagtttagtgtaaattgaattc
ttatgaagagctatattgggccctatttttttttttgcccaatttgctac
tgagtgcctctatgcaagacttagggctattcgcattta
gaattcactctgtagagcaagcccctctttttttttttttttttttttcc
gtttttttcgagacagggtttctctgtgtagtcctgacagtcctggaact
cactttgtagaccagactggccttgaactcagaaatccgcctgcctctgc
ctcccgggtgctgggattaaaggcgtgcaccaccacgccctactagcaag
ctcctcttaaactcagagaaatcactgtagacctccttctggagcactgg
gattaaaggtatgtgccaccactgtcctactcataattctcagacaagtg
gagccccttctgacctttttataacctgcctaagagtttggatgttgaga
ttccaggccggggatccaattgactactcaggcttggctttgatttcttt
tggtctttcagtgtttcctgctagcttcttttaggtgtctcttttgtttt
ctatgtatgattgttttgtctgcatgggtgtgtgtgcaccacatgagtac
atcgtgacctcggattcagaaaatgccatcagagcccctgaaattggagt
cttgaataggtgggagccaccgtgtgacttctggtaatcacgcccttgtc
ccgggcaagagcatcagtacccttaaccaccaagtcatctctccagatgc
caaggtagtcagggttttttgtttgtttgttttgttttgttgttgttgtt
cagttaccacacatccacacaaacgcttcagcagaagaacatgagtctca
tcttcatctccatactatatgcatacttattattctaaactatgcagatg
tggaagtgggtgtgtgaatgagtgtgcaacagtcaaggcagccagaggct
ttatacttccccagagctgaaagctccaggaagttctcagatgtccactt
gggtgctaagaactaagctcaggtctcttctaagggcagtacacaccaca
gtgtgtactaaggaacattttctcagcatggcattctatttatttaattg
gggggtggtggtgggtacaaagaacagcatactgctggaactgcttgaag
gcgaagaactttatgagtctaggtctgtgctttcacctcgttcattcagg
gtagaaatggttaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_101416358_101417502
seq2: B6Ng01-025N04.b_45_1183

seq1  GAATTCAAAGTAAGGTCCTCATGATTGTATAGCAAGCACTTTACCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAGGTCCTCATGATTGTATAGCAAGCACTTTACCCACTG  50

seq1  AGCCATCTCCCTCAGCCTCTACGATTCCATCTCTTCTTCTTCACATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCCCTCAGCCTCTACGATTCCATCTCTTCTTCTTCACATGTGT  100

seq1  CTTAGGGTTCCATCACTATGAAGAGACACCATGGCCACAGCAACTCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGTTCCATCACTATGAAGAGACACCATGGCCACAGCAACTCCTAT  150

seq1  AAAGGAAAACATTTAATTGAGGCTGTCTTATAGTTTCAGAGGTTTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAACATTTAATTGAGGCTGTCTTATAGTTTCAGAGGTTTAGTCT  200

seq1  ATTATCGTCATGGCAGGAAGCATGGCAACATGCAGGCAGATATGGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCGTCATGGCAGGAAGCATGGCAACATGCAGGCAGATATGGTGCTG  250

seq1  GAAGATCCAAGAGTTCTATTCTATATCTTGATCCACAGACAAGAAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCAAGAGTTCTATTCTATATCTTGATCCACAGACAAGAAGGAGA  300

seq1  CCGTGGGCCATACTGGGTGTAGCTTGAGCGTATATGACCTCAAAGCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGCCATACTGGGTGTAGCTTGAGCGTATATGACCTCAAAGCCCAC  350

seq1  ACTTCCTTCAATAAGGCTATATGCCTCCTAATAGTGCCATTCCCTATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTCAATAAGGCTATATGCCTCCTAATAGTGCCATTCCCTATGGC  400

seq1  CAAGCATTCAAACCCATGAATCTGCGGGGGCTGTACCTTTTCAAACCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTCAAACCCATGAATCTGCGGGGGCTGTACCTTTTCAAACCACC  450

seq1  ATAAACACTATATCTCATTCTCATATCTATGAACAAGCTTATTCACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTATATCTCATTCTCATATCTATGAACAAGCTTATTCACTTTT  500

seq1  GAAGGTAAGTAATAATTAAATAGATAGTAGCAAATTCCATATTTGGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAAGTAATAATTAAATAGATAGTAGCAAATTCCATATTTGGGTCT  550

seq1  CCTTTCCCCTTGGCCTGTTAGAAAGTCTGCTGCTCTTGGCAAACGCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTTGGCCTGTTAGAAAGTCTGCTGCTCTTGGCAAACGCTGTT  600

seq1  CTTCTAGGGGGGGATGGCTTGTTTTGTACAGTTTGGCAATGCTAAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGGGGGGATGGCTTGTTTTGTACAGTTTGGCAATGCTAAAATGA  650

seq1  TGGCTTGCTGCAAGGTGAACTTACTATGGCTAGGATGTGGAGAACTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTGCAAGGTGAACTTACTATGGCTAGGATGTGGAGAACTAATC  700

seq1  TCACTACATGGGTCAAGTTGTTTAACAGTGTTGTTCGGCTCTTAATTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACATGGGTCAAGTTGTTTAACAGTGTTGTTCGGCTCTTAATTCTG  750

seq1  ATTCCTTTTGTCTACTTATTATATTAATTATTAGAGAAGAGTTGAACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTGTCTACTTATTATATTAATTATTAGAGAAGAGTTGAACTTT  800

seq1  TCATGAGTAGTTATGAAATAGCCTATTTCTTCCTATTAGGTACACACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTAGTTATGAAATAGCCTATTTCTTCCTATTAGGTACACACATA  850

seq1  TGATATGTACTTTTGGTGACCCTCCTCCACAGTTTTTTTTGATATGAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTACTTTTGGTGACCCTCCTCCACAGTTTTTTTTGATATGAATG  900

seq1  ACTTCTTTAGCTTGGAAGATAATTATTGTATTCCATTCAACTTTATTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTAGCTTGGAAGATAATTATTGTATTCCATTCAACTTTATTGAC  950

seq1  ATTAAGGTAGCTCTTCAAC-TTTATTTTGATTTATCTTGAATAGCATATC  999
      ||||||||||||| ||||| |||||||||||||||| |||||||||||||
seq2  ATTAAGGTAGCTC-TCAACTTTTATTTTGATTTATC-TGAATAGCATATC  998

seq1  -TTTTTCTAACCACCTTCTTTAGTGAATTTGAGTTTTAGTGTTAAAATTG  1048
       |||||||||||||||||||||||||||||||| ||||||||  ||||||
seq2  TTTTTTCTAACCACCTTCTTTAGTGAATTTGAG-TTTAGTGT--AAATTG  1045

seq1  ATTTCTTATGAGAGGCTTATAATTGGGCCTTA-TTTTTTTTTTGCCCAAT  1097
      | ||||||||| ||   ||| |||||||| || |||||||||||||||||
seq2  AATTCTTATGA-AGAGCTAT-ATTGGGCCCTATTTTTTTTTTTGCCCAAT  1093

seq1  TTGCTACTGAGTGCCTTCTAAGCAAGACATTTAGGCTATTCGCATTTA  1145
      ||||||||||||||| |||| ||||||| ||  |||||||||||||||
seq2  TTGCTACTGAGTGCC-TCTATGCAAGAC-TTAGGGCTATTCGCATTTA  1139

seq1: chr4_101545508_101546623
seq2: B6Ng01-025N04.g_67_1183 (reverse)

seq1  GGTTTAACCA--TCTTCCCTGGAATGAACAGAGTGGAAGCACAGTACT-G  47
      ||||||||||  ||| |||| ||||||||   ||| ||||||||  || |
seq2  GGTTTAACCATTTCTACCCT-GAATGAACGAGGTGAAAGCACAGACCTAG  49

seq1  ACTCCTAAAGTTCTTTGACCTCAAGCAGTCCAAGGCAGTAATGCTGTTCT  97
      |||| |||||||||| | | ||||||||| | | ||||| ||||||||||
seq2  ACTCATAAAGTTCTTCGCCTTCAAGCAGTTCCA-GCAGT-ATGCTGTTCT  97

seq1  TTGTACACA----CACACACACAATAAATAAATAGAATGCCATGGCTGGA  143
      |||||| ||    ||| | |  | ||||||||||||||||||| ||| ||
seq2  TTGTACCCACCACCACCCCCCAATTAAATAAATAGAATGCCAT-GCT-GA  145

seq1  GAAATGGTTCCTTAGGTACACACTGTGGTGTGTACTGCCCTTAGAGAGGA  193
      ||||  |||||||| ||||||||||||||||||||||||||||||   ||
seq2  GAAAATGTTCCTTA-GTACACACTGTGGTGTGTACTGCCCTTAGAAGAGA  194

seq1  CCTGAGCTTAGTTCCTAGCACCCAAGTTGGACATCTGAGAACTTCCTGGA  243
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  CCTGAGCTTAGTTCTTAGCACCCAAG-TGGACATCTGAGAACTTCCTGGA  243

seq1  GC-TTCAGCTCTGGGGAAGTATAAGGCCTCTGGCTGCCTTGACTGTTGCA  292
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTTTCAGCTCTGGGGAAGTATAAAGCCTCTGGCTGCCTTGACTGTTGCA  293

seq1  CACTCATTCACACACCCACTTCCACATCTGCATAGTTTAGAATAATAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTCACACACCCACTTCCACATCTGCATAGTTTAGAATAATAAGT  343

seq1  ATGCATATAGTATGGAGATGAAGATGAGACTCATGTTCTTCTGCTGAAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAGTATGGAGATGAAGATGAGACTCATGTTCTTCTGCTGAAGC  393

seq1  GTTTGTGTGGATGTGTGGTAACTGAACAACAACAACAAAACAAAACAAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGGATGTGTGGTAACTGAACAACAACAACAAAACAAAACAAAC  443

seq1  AAACAAAAAACCCTGACTACCTTGGCATCTGGAGAGATGACTTGGTGGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACCCTGACTACCTTGGCATCTGGAGAGATGACTTGGTGGTT  493

seq1  AAGGGTACTGATGCTCTTGCCCGGGACAAGGGCGTGATTACCAGAAGTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTACTGATGCTCTTGCCCGGGACAAGGGCGTGATTACCAGAAGTCA  543

seq1  CACGGTGGCTCCCACCTATTCAAGACTCCAATTTCAGGGGCTCTGATGGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGGCTCCCACCTATTCAAGACTCCAATTTCAGGGGCTCTGATGGC  593

seq1  ATTTTCTGAATCCGAGGTCACGATGTACTCATGTGGTGCACACACACCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAATCCGAGGTCACGATGTACTCATGTGGTGCACACACACCCA  643

seq1  TGCAGACAAAACAATCATACATAGAAAACAAAAGAGACACCTAAAAGAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAAACAATCATACATAGAAAACAAAAGAGACACCTAAAAGAAG  693

seq1  CTAGCAGGAAACACTGAAAGACCAAAAGAAATCAAAGCCAAGCCTGAGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGAAACACTGAAAGACCAAAAGAAATCAAAGCCAAGCCTGAGTA  743

seq1  GTCAATTGGATCCCCGGCCTGGAATCTCAACATCCAAACTCTTAGGCAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTGGATCCCCGGCCTGGAATCTCAACATCCAAACTCTTAGGCAGG  793

seq1  TTATAAAAAGGTCAGAAGGGGCTCCACTTGTCTGAGAATTATGAGTAGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAAGGTCAGAAGGGGCTCCACTTGTCTGAGAATTATGAGTAGGA  843

seq1  CAGTGGTGGCACATACCTTTAATCCCAGTGCTCCAGAAGGAGGTCTACAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGCACATACCTTTAATCCCAGTGCTCCAGAAGGAGGTCTACAG  893

seq1  TGATTTCTCTGAGTTTAAGAGGAGCTTGCTAGTAGGGCGTGGTGGTGCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCTGAGTTTAAGAGGAGCTTGCTAGTAGGGCGTGGTGGTGCAC  943

seq1  GCCTTTAATCCCAGCACCCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACCCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  993

seq1  AAGGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACTGTCAGGACTACACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACTGTCAGGACTACACA  1043

seq1  GAGAAACCCTGTCTCGAAAAAAACGGAAAAAAAAAAAAAAAAAAAAAGAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGAAAAAAACGGAAAAAAAAAAAAAAAAAAAAAGAG  1093

seq1  GGGCTTGCTCTACAGAGTGAATTC  1116
      ||||||||||||||||||||||||
seq2  GGGCTTGCTCTACAGAGTGAATTC  1117