BAC Information

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BAC

Clone NameB6Ng01-025N05
Chromosome4 (Build37)
Map Location 31,231,409 - 31,382,713
singlet/doubletdoublet
Overlap geneLOC100040891
Upstream geneLOC665185, LOC619906, LOC100040864
Downstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N05.bB6Ng01-025N05.g
ACCDH857049DH857050
length1,1311,065
definitionDH857049|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N05, 5' end.DH857050|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,231,409 - 31,232,564)(31,381,638 - 31,382,713)
sequence
gaattcattaaacttattccagactaaaataaaaatacaactactacgtg
taaaaggcttttgagttggctcgatttcccaattatctgagccttagaaa
aaggacatacatgcactgggcactgtacatttagtgggaagaatttaaaa
agtcagactctttctgggtttaaaaaagcctatctcttccggatagtaca
atttagtgactgacttggtattttgttgttcaaataataattttgatata
ttaagaggggaaaatgctggaaatttatttcaatagcttcactttcagat
cctcatggatgccatgctcccggctcagcagagtaccctgttccagcagt
acaaacctgggaagaaagctacagagctaacacaaaactcagattgtttc
cctgtacctcaaaataaagatgtgttttatttctttggaagatagcatga
attgttggtttttaatttattcttaaaagggaactatttgagtacaagta
tttcttcctctaaatagaaaataataagtggtaccttcttgtaatgctct
aaaaaaaattaaaaaacaaaaaaccagagaccatgtactgctttcttccc
actggtggaattagatgactataaattacctaagtctaaccacagacatt
gagcaaggtaggtgggctttctttgtggtgaattattggtgaagagaatc
ttgaaggttacagttttagacaaaagaaatgctaataaaatcctagcaca
tgctctcccactgggcatgcatctaacagctctgatttcctcatggtgat
ctcagagtgactagcaagtgcagccaaaccagaagagacagcaatgatta
gatctgatgagcagagaggacccacagcaggaccaaagtctctaggacgg
tcattgaaaaaaaaaaaaaagaggaatctcagattcacaaaggttgcaaa
tggatgcagacactccaaagttttaaataactggttacttccaactcgcc
tacatacagcagagaccatctagcactcagaaatgatcacactggagaat
tttaaactgaacacttcagtagtagatcaggcaccccgaggcatattcag
tcaggatagaccacttattttgctcagtacc
gaattcatgtcatcccgtggcttgtcttaacagatagtttaggagggaaa
acaggccaacatttggtcatggctatttatacttaaaaagttatacatac
tgcgcttaagggtaaatcgcttttctgattaaaaaaaaatcactgtggtt
ttgaggatgaacaatgctcaaatctcaatgaaaaataataagaaatggga
tttgggaacctgtgttttattataattaaattggagaaagcatgagatta
ttatcataaatgctacctttagaaggctggaaaaatataaatcctaaaag
caatttctagttttcacaatgctcctctcagctcccttcctggggacagt
gggaacattttgcaggatcaacactgttactcgattagcagctgacagct
cggctgcttctcgggctagctgcagctttgaaggaattcttgacctactt
ctgaattcttgtttttttttttccagagagttcagtcttcggtgattatc
ttagccacagcagctactcactccaataactgctcaatgatgaaatgtgt
ctggagccagccaaacacactccagccacatggctactttcactttctag
aaccgcatcaattagagaaaaccgggacatgatgagagttttaaaactta
ggtgatgtgtttgcgctttaatttgtgtttgtatttttggggaagaccgt
catgcaatttccccattgtctcctcattagcatttcttcaaattagattt
ttttctaccagactaccaaaatatgacagcatgtaattaatcataaattt
aaatgctttttaaaaattcatgtgtgtatacttaagaacaaaatatgtcc
atgattatagagctatgtgttaaaatttaacatccttctcaagggcttaa
ctcatattgggcttcctttgaaagctttaactggacacatacatatgtag
gatctacaaaggagatttgggctgaaaaaaaaaaaaaaaagcatagtact
tacctgattcactttgttctgacccattcagcttaccgagatagcttcag
aaacacggaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_31231409_31232564
seq2: B6Ng01-025N05.b_41_1171

seq1  GAATTCATTAAACTTATTCCAGACTAAAATAAAAATACAACTACTACGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAACTTATTCCAGACTAAAATAAAAATACAACTACTACGTG  50

seq1  TAAAAGGCTTTTGAGTTGGCTCGATTTCCCAATTATCTGAGCCTTAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCTTTTGAGTTGGCTCGATTTCCCAATTATCTGAGCCTTAGAAA  100

seq1  AAGGACATACATGCACTGGGCACTGTACATTTAGTGGGAAGAATTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATACATGCACTGGGCACTGTACATTTAGTGGGAAGAATTTAAAA  150

seq1  AGTCAGACTCTTTCTGGGTTTAAAAAAGCCTATCTCTTCCGGATAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACTCTTTCTGGGTTTAAAAAAGCCTATCTCTTCCGGATAGTACA  200

seq1  ATTTAGTGACTGACTTGGTATTTTGTTGTTCAAATAATAATTTTGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGACTGACTTGGTATTTTGTTGTTCAAATAATAATTTTGATATA  250

seq1  TTAAGAGGGGAAAATGCTGGAAATTTATTTCAATAGCTTCACTTTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGGGAAAATGCTGGAAATTTATTTCAATAGCTTCACTTTCAGAT  300

seq1  CCTCATGGATGCCATGCTCCCGGCTCAGCAGAGTACCCTGTTCCAGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGATGCCATGCTCCCGGCTCAGCAGAGTACCCTGTTCCAGCAGT  350

seq1  ACAAACCTGGGAAGAAAGCTACAGAGCTAACACAAAACTCAGATTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTGGGAAGAAAGCTACAGAGCTAACACAAAACTCAGATTGTTTC  400

seq1  CCTGTACCTCAAAATAAAGATGTGTTTTATTTCTTTGGAAGATAGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCTCAAAATAAAGATGTGTTTTATTTCTTTGGAAGATAGCATGA  450

seq1  ATTGTTGGTTTTTAATTTATTCTTAAAAGGGAACTATTTGAGTACAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGTTTTTAATTTATTCTTAAAAGGGAACTATTTGAGTACAAGTA  500

seq1  TTTCTTCCTCTAAATAGAAAATAATAAGTGGTACCTTCTTGTAATGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTCTAAATAGAAAATAATAAGTGGTACCTTCTTGTAATGCTCT  550

seq1  AAAAAAAATTAAAAAACAAAAAACCAGAGACCATGTACTGCTTTCTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTAAAAAACAAAAAACCAGAGACCATGTACTGCTTTCTTCCC  600

seq1  ACTGGTGGAATTAGATGACTATAAATTACCTAAGTCTAACCACAGACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGAATTAGATGACTATAAATTACCTAAGTCTAACCACAGACATT  650

seq1  GAGCAAGGTAGGTGGGCTTTCTTTGTGGTGAATTATTGGTGAAGAGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGTAGGTGGGCTTTCTTTGTGGTGAATTATTGGTGAAGAGAATC  700

seq1  TTGAAGGTTACAGTTTTAGACAAAAGAAATGCTAATAAAATCCTAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGTTACAGTTTTAGACAAAAGAAATGCTAATAAAATCCTAGCACA  750

seq1  TGCTCTCCCACTGGGCATGCATCTAACAGCTCTGATTTCCTCATGGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCACTGGGCATGCATCTAACAGCTCTGATTTCCTCATGGTGAT  800

seq1  CTCAGAGTGACTAGCAAGTGCAGCCAAACCAGAAGAGACAGCAATGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGACTAGCAAGTGCAGCCAAACCAGAAGAGACAGCAATGATTA  850

seq1  GATCTGATGAGCAGAGAGGACCCACAGCAGGACCAAAGTCTCTAGGACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGAGCAGAGAGGACCCACAGCAGGACCAAAGTCTCTAGGACGG  900

seq1  TCATTGAAAAAAAAAAAAAAAGAGGAAATCTCAGATTCACAAAGGTTGCA  950
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATTG-AAAAAAAAAAAAAAGAGG-AATCTCAGATTCACAAAGGTTGCA  948

seq1  AATGGATGCAGACACTCCAAAAGTTTTTAAAATAACTGGTTACTTCCAAC  1000
      |||||||||||||||||| ||||||||  |||||||||||||||||||||
seq2  AATGGATGCAGACACTCC-AAAGTTTT--AAATAACTGGTTACTTCCAAC  995

seq1  TCGCCTAACATACAGCCAGAGAACCATCTAGCACTCAGAAAATTGATCAC  1050
      |||||| |||||||| ||||| |||||||||||||||||||  |||||||
seq2  TCGCCT-ACATACAG-CAGAG-ACCATCTAGCACTCAGAAA--TGATCAC  1040

seq1  AACTGGAGAATTTTAATACATGAACACTTCCAGTAGTAAGATTCAGGGTC  1100
       ||||||||||||||| || ||||||||| ||||||| ||| |||||  |
seq2  -ACTGGAGAATTTTAA-AC-TGAACACTT-CAGTAGT-AGA-TCAGG--C  1082

seq1  ACTCAGAGCCATTATTCAAAGTCAGCATAGACCACTTAATTTTCTGCTTC  1150
      || | ||| || |||||  |||||| |||||||||||| ||| |    ||
seq2  ACCCCGAGGCA-TATTC--AGTCAGGATAGACCACTTATTTTGC----TC  1125

seq1  AGTACC  1156
      ||||||
seq2  AGTACC  1131

seq1: chr4_31381638_31382713
seq2: B6Ng01-025N05.g_70_1134 (reverse)

seq1  AAAAATTTCTGTGTTTCTGAAGCTATCTTCGGGTAAGGCTGATTGGTGTT  50
       |||| ||| ||||||||||||||||||   ||||| ||||| ||  | |
seq2  -AAAAATTCCGTGTTTCTGAAGCTATCT--CGGTAA-GCTGAATG--GGT  44

seq1  CAGAACATAGTGAATCAGGTAAGTACTATGCTTTTTTTTTTTTTTTTCAG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAGTGAATCAGGTAAGTACTATGCTTTTTTTTTTTTTTTTCAG  94

seq1  CCCAAATCTCCCTTTTGTAGATTCCTACATATGTATGTGTTCAAGTTAAA  150
      |||||||||||  |||||||| ||||||||||||||||| || |||||||
seq2  CCCAAATCTCC--TTTGTAGA-TCCTACATATGTATGTG-TCCAGTTAAA  140

seq1  GCTTTCAAAGGGAGCCCAATTATGAGTTAAGCCCTTGAGAAGGATGTTAA  200
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGGAAGCCCAA-TATGAGTTAAGCCCTTGAGAAGGATGTTAA  189

seq1  ATTTTAACACATAGCTCTATTAATCATGGACATATTTTGTTCTTAAGTAT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTTAACACATAGCTCTA-TAATCATGGACATATTTTGTTCTTAAGTAT  238

seq1  ACACACATGAATTTTTAAAAAGCATTT-AATTTATGATTAATTACATGCT  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACACACATGAATTTTTAAAAAGCATTTAAATTTATGATTAATTACATGCT  288

seq1  GTCATATTTTGGTAGTCTGGTAGAAAAAAATCTAATTTGAAGAAATGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTTGGTAGTCTGGTAGAAAAAAATCTAATTTGAAGAAATGCTA  338

seq1  ATGAGGAGACAATGGGGAAATTGCATGACGGTCTTCCCCAAAAATACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGACAATGGGGAAATTGCATGACGGTCTTCCCCAAAAATACAAA  388

seq1  CACAAATTAAAGCGCAAACACATCACCTAAGTTTTAAAACTCTCATCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTAAAGCGCAAACACATCACCTAAGTTTTAAAACTCTCATCATG  438

seq1  TCCCGGTTTTCTCTAATTGATGCGGTTCTAGAAAGTGAAAGTAGCCATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTTTCTCTAATTGATGCGGTTCTAGAAAGTGAAAGTAGCCATGT  488

seq1  GGCTGGAGTGTGTTTGGCTGGCTCCAGACACATTTCATCATTGAGCAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGTGTGTTTGGCTGGCTCCAGACACATTTCATCATTGAGCAGTT  538

seq1  ATTGGAGTGAGTAGCTGCTGTGGCTAAGATAATCACCGAAGACTGAACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTGAGTAGCTGCTGTGGCTAAGATAATCACCGAAGACTGAACTC  588

seq1  TCTGGAAAAAAAAAAACAAGAATTCAGAAGTAGGTCAAGAATTCCTTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAAAAAAAACAAGAATTCAGAAGTAGGTCAAGAATTCCTTCAA  638

seq1  AGCTGCAGCTAGCCCGAGAAGCAGCCGAGCTGTCAGCTGCTAATCGAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGCTAGCCCGAGAAGCAGCCGAGCTGTCAGCTGCTAATCGAGTA  688

seq1  ACAGTGTTGATCCTGCAAAATGTTCCCACTGTCCCCAGGAAGGGAGCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGATCCTGCAAAATGTTCCCACTGTCCCCAGGAAGGGAGCTGA  738

seq1  GAGGAGCATTGTGAAAACTAGAAATTGCTTTTAGGATTTATATTTTTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCATTGTGAAAACTAGAAATTGCTTTTAGGATTTATATTTTTCCA  788

seq1  GCCTTCTAAAGGTAGCATTTATGATAATAATCTCATGCTTTCTCCAATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTAAAGGTAGCATTTATGATAATAATCTCATGCTTTCTCCAATTT  838

seq1  AATTATAATAAAACACAGGTTCCCAAATCCCATTTCTTATTATTTTTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATAAAACACAGGTTCCCAAATCCCATTTCTTATTATTTTTCAT  888

seq1  TGAGATTTGAGCATTGTTCATCCTCAAAACCACAGTGATTTTTTTTTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGCATTGTTCATCCTCAAAACCACAGTGATTTTTTTTTAAT  938

seq1  CAGAAAAGCGATTTACCCTTAAGCGCAGTATGTATAACTTTTTAAGTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGCGATTTACCCTTAAGCGCAGTATGTATAACTTTTTAAGTATA  988

seq1  AATAGCCATGACCAAATGTTGGCCTGTTTTCCCTCCTAAACTATCTGTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCATGACCAAATGTTGGCCTGTTTTCCCTCCTAAACTATCTGTTA  1038

seq1  AGACAAGCCACGGGATGACATGAATTC  1076
      |||||||||||||||||||||||||||
seq2  AGACAAGCCACGGGATGACATGAATTC  1065