BAC Information

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BAC

Clone NameB6Ng01-025O17
Chromosome4 (Build37)
Map Location 89,736,642 - 89,877,136
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025O17.bB6Ng01-025O17.g
ACCDH857114DH857115
length1,0091,169
definitionDH857114|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O17, 5' end.DH857115|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,736,642 - 89,737,659)(89,875,937 - 89,877,136)
sequence
gaattccagataagaagtccagaatagaatccttatcagaattacaaata
cccttgtcatctgctagctatcctccgaaatgatagggttgttaacaata
ttgatgattacaagtagccgtgggtgaggcaggacagaggagaacaggag
ttagggaaaatagtgataagacagacatgtgatcagttggattctcatgc
cgcagtccatcattgagcacagatgaagccccttctgtcatcgtgtgtta
gatatgggatcttgactgctgagcactgttacttcaatttggaaaatcct
gtaattaattttaggcacaaaattatacagtatttaatgatgagtgtaga
attttgtatgagaattttaagaattggctttccatttaaaattttacaat
aaggaattggttatatggaattataaataaggaacatatttagaatatat
tcatgattcttgaggatttcatacccatgtaatattatatctagtaatat
ctgtccctgtttctgccctccagaccctcctacatcctctcatcatatcc
ccttaccagctttgtgcattttacgttcctttttattttttttttacaaa
tatgctcctaattccaattaatgctgctaatattctatgggtgtggaacc
atgcaattgaggatggggtaaaagtggatacatactgaaaaagaatgact
cccatcctttagcaagtatcataactttttatttttaaacttactgaaac
atgaacattgcatatgttttagcaacctatttatttcaattacatagttg
tcaatgagtggcttagggatgataggatgaatgtcctagagataataaga
tgaatggcttacaaaatcccagaaaggatctctgaaacccataaattctc
tgacagaattagagatggtgtgctattttgtttgccactttagtaactaa
tgtgtgtattgaaaggaagcagatgaaaccctgctcccttaacactctat
gtgttgttc
gaattcttcttccatttgtattccaatggcatttaggaaaacaaaacaaa
ataaaaaaacaaacaaaaacacagaattcaaaaaatcattagccacactg
ttgttcaaaaaacacttactcttctgccaattttaatgtatttccttttg
acaattgttatcacattaatctcaatattcactcttacaggttagacaat
tatgtattgatttaatgaagtagatttgtgttttacttgctataattata
ttttcagaattcagtctgatcactagaatatctcactaaactgagtttta
cttctatttatcaaagatacatggagtgaaggaatataaactaatctatt
tctgccctgttgtagaatgcaaaacatgactagcatctatgagctagaaa
gcacctatctctaagatactgcaataattccatcttcacaccaaaaatat
gtagataagatgatcaatttccaagaacaaagcaggctggcctgaaggag
aaaatatagagaagttctaggagtattatatcacaggaaaaaaggactgg
gatgatgtggtcccaactcttcatctaattgcttcactctcaatgtgctc
tttgtcattttagatatctattgttcatctttgatttccacctttacttt
tcttcctgtttaattgacaccagaatcacgtgatgccccagggcagttgg
ctgttgctctgtgttacagactatgttgacctcctggagatatttctcct
cttttattttatttttttattttttggccaatttttaaaattattttctt
tatttacgtttcaaattttatgccctttcctcatttcccctccaaaagtc
cccctatcccatcccccctccctgctcctaacacacccactcctgctttc
ctgtcctggcattccctacactggggcatagagccttcacaagaggagag
gcctctctctcattgatgtccacaaggccatcctctgctatatatgtggc
tgagcctgagtcctcaatgtgtactctttgctgtgatttagtcctgggag
ccttggggtgctgctgatcaaatgttttctcatgggaatacgaccattca
gctcttgatcttcatagctccctccatgttggacccgtgctagttcacgt
tgtgggagctccacctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_89736642_89737659
seq2: B6Ng01-025O17.b_50_1058

seq1  GAATTCCAGATAAGAAGTCCAGAATAGAATCCTTATCAGAATTACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAAGAAGTCCAGAATAGAATCCTTATCAGAATTACAAATA  50

seq1  CCCTTGTCATCTGCTAGCTATCCTCCGAAATGATAGGGTTGTTAACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCATCTGCTAGCTATCCTCCGAAATGATAGGGTTGTTAACAATA  100

seq1  TTGATGATTACAAGTAGCCGTGGGTGAGGCAGGACAGAGGAGAACAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATTACAAGTAGCCGTGGGTGAGGCAGGACAGAGGAGAACAGGAG  150

seq1  TTAGGGAAAATAGTGATAAGACAGACATGTGATCAGTTGGATTCTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAATAGTGATAAGACAGACATGTGATCAGTTGGATTCTCATGC  200

seq1  CGCAGTCCATCATTGAGCACAGATGAAGCCCCTTCTGTCATCGTGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCCATCATTGAGCACAGATGAAGCCCCTTCTGTCATCGTGTGTTA  250

seq1  GATATGGGATCTTGACTGCTGAGCACTGTTACTTCAATTTGGAAAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGATCTTGACTGCTGAGCACTGTTACTTCAATTTGGAAAATCCT  300

seq1  GTAATTAATTTTAGGCACAAAATTATACAGTATTTAATGATGAGTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAATTTTAGGCACAAAATTATACAGTATTTAATGATGAGTGTAGA  350

seq1  ATTTTGTATGAGAATTTTAAGAATTGGCTTTCCATTTAAAATTTTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATGAGAATTTTAAGAATTGGCTTTCCATTTAAAATTTTACAAT  400

seq1  AAGGAATTGGTTATATGGAATTATAAATAAGGAACATATTTAGAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTGGTTATATGGAATTATAAATAAGGAACATATTTAGAATATAT  450

seq1  TCATGATTCTTGAGGATTTCATACCCATGTAATATTATATCTAGTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTCTTGAGGATTTCATACCCATGTAATATTATATCTAGTAATAT  500

seq1  CTGTCCCTGTTTCTGCCCTCCAGACCCTCCTACATCCTCTCATCATATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGTTTCTGCCCTCCAGACCCTCCTACATCCTCTCATCATATCC  550

seq1  CCTTACCAGCTTTGTGCATTTTACGTTCCTTTTTATTTTTTTTTTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGCTTTGTGCATTTTACGTTCCTTTTTATTTTTTTTTTACAAA  600

seq1  TATGCTCCTAATTCCAATTAATGCTGCTAATATTCTATGGGTGTGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCCTAATTCCAATTAATGCTGCTAATATTCTATGGGTGTGGAACC  650

seq1  ATGCAATTGAGGATGGGGTAAAAGTGGATACATACTGAAAAAGAATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTGAGGATGGGGTAAAAGTGGATACATACTGAAAAAGAATGACT  700

seq1  CCCATCCTTTAGCAAGTATCATAACTTTTTATTTTTAAACTTACTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTTTAGCAAGTATCATAACTTTTTATTTTTAAACTTACTGAAAC  750

seq1  ATGAACATTGCAAATGTTTTAGCAACCTATTTATTTCAATTACATAGTTG  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTGCATATGTTTTAGCAACCTATTTATTTCAATTACATAGTTG  800

seq1  TCAATGAGTGGCTTAGGGATGATAGGATGAATGTCCTAGAGATAATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGTGGCTTAGGGATGATAGGATGAATGTCCTAGAGATAATAAGA  850

seq1  TGAATGGCTTACAAAATCCCAGAAAGGATCTCTGAAACCCATAAATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCTTACAAAATCCCAGAAAGGATCTCTGAAACCCATAAATTCTC  900

seq1  TTGACAGAATTAGAGATGGTGTTGCTATTTTTGTTTGCCACTTTAGTAAC  950
       |||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  -TGACAGAATTAGAGATGGTG-TGCTA-TTTTGTTTGCCACTTTAGTAAC  947

seq1  TAATGTGTGTATTGAAAGGAAGGCAGAGTGAAACCCTGCCTCCCTTAACA  1000
      ||||||||||||||||||||| ||||| |||||||||| |||||||||| 
seq2  TAATGTGTGTATTGAAAGGAA-GCAGA-TGAAACCCTG-CTCCCTTAAC-  993

seq1  ACTTCATATGTGTTGTTC  1018
      |||   ||||||||||||
seq2  ACT--CTATGTGTTGTTC  1009

seq1: chr4_89875937_89877136
seq2: B6Ng01-025O17.g_68_1236 (reverse)

seq1  CAGAGGTGGATGCTCCCAACCAACCGTTGAACTGAGCACAGGGTCCCCAA  50
      |||||||||| |||||||  ||||   |||||| ||||| ||||||   |
seq2  CAGAGGTGGA-GCTCCCA--CAAC--GTGAACT-AGCAC-GGGTCCAACA  43

seq1  TGGA-GGAGCTATAGAAAGGATCCAAGGAGCTGAATGGGTTTGTAGTCCC  99
      |||| |||||||| |||  ||||  | |||||||||||  | ||| ||||
seq2  TGGAGGGAGCTAT-GAA--GATC--AAGAGCTGAATGG--TCGTATTCCC  86

seq1  ATAGGAGGAAAAACAATATGAATCAGCCAGCACCCCCAGAGCTCCCAGGG  149
      ||  |||  ||||| || || ||||| ||||||||| || ||||||| ||
seq2  AT--GAG--AAAAC-ATTTG-ATCAG-CAGCACCCCAAG-GCTCCCA-GG  127

seq1  ACTAAATCACCAGCCAAAGAGTACACATTGGAGGGACTCAAGGCTCCAGC  199
      ||||||||| ||| ||||||||||||||||   |||||| ||||| ||||
seq2  ACTAAATCA-CAG-CAAAGAGTACACATTG--AGGACTC-AGGCT-CAGC  171

seq1  CACATATATAGCAGAGGATGGCCTTGTGGGACATCAATGAGAGGAGAGGC  249
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CACATATATAGCAGAGGATGGCCTTGT-GGACATCAATGAGA-GAGAGGC  219

seq1  CTCTCCTCTTGTGAAGGCTCTATGCCCCAGTGTAGGGGAATGCCAGGACA  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTCCTCTTGTGAAGGCTCTATGCCCCAGTGTA-GGGAATGCCAGGACA  268

seq1  GGAAAGCAGGAGTGGGTGTGTTAGGAGCAGGGAGGGGGGATGGGATAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGGAGTGGGTGTGTTAGGAGCAGGGAGGGGGGATGGGATAGGG  318

seq1  GGACTTTTGGAGGGGAAATGAGGAAAGGGCATAAAATTTGAAACGTAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGGAGGGGAAATGAGGAAAGGGCATAAAATTTGAAACGTAAAT  368

seq1  AAAGAAAATAATTTTAAAAATTGGCCAAAAAATAAAAAAATAAAATAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATAATTTTAAAAATTGGCCAAAAAATAAAAAAATAAAATAAAA  418

seq1  GAGGAGAAATATCTCCAGGAGGTCAACATAGTCTGTAACACAGAGCAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAATATCTCCAGGAGGTCAACATAGTCTGTAACACAGAGCAACA  468

seq1  GCCAACTGCCCTGGGGCATCACGTGATTCTGGTGTCAATTAAACAGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGCCCTGGGGCATCACGTGATTCTGGTGTCAATTAAACAGGAAG  518

seq1  AAAAGTAAAGGTGGAAATCAAAGATGAACAATAGATATCTAAAATGACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAGGTGGAAATCAAAGATGAACAATAGATATCTAAAATGACAA  568

seq1  AGAGCACATTGAGAGTGAAGCAATTAGATGAAGAGTTGGGACCACATCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACATTGAGAGTGAAGCAATTAGATGAAGAGTTGGGACCACATCAT  618

seq1  CCCAGTCCTTTTTTCCTGTGATATAATACTCCTAGAACTTCTCTATATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCTTTTTTCCTGTGATATAATACTCCTAGAACTTCTCTATATTT  668

seq1  TCTCCTTCAGGCCAGCCTGCTTTGTTCTTGGAAATTGATCATCTTATCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAGGCCAGCCTGCTTTGTTCTTGGAAATTGATCATCTTATCTA  718

seq1  CATATTTTTGGTGTGAAGATGGAATTATTGCAGTATCTTAGAGATAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTGGTGTGAAGATGGAATTATTGCAGTATCTTAGAGATAGGTG  768

seq1  CTTTCTAGCTCATAGATGCTAGTCATGTTTTGCATTCTACAACAGGGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCTCATAGATGCTAGTCATGTTTTGCATTCTACAACAGGGCAG  818

seq1  AAATAGATTAGTTTATATTCCTTCACTCCATGTATCTTTGATAAATAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTAGTTTATATTCCTTCACTCCATGTATCTTTGATAAATAGAA  868

seq1  GTAAAACTCAGTTTAGTGAGATATTCTAGTGATCAGACTGAATTCTGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCAGTTTAGTGAGATATTCTAGTGATCAGACTGAATTCTGAAA  918

seq1  ATATAATTATAGCAAGTAAAACACAAATCTACTTCATTAAATCAATACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATAGCAAGTAAAACACAAATCTACTTCATTAAATCAATACAT  968

seq1  AATTGTCTAACCTGTAAGAGTGAATATTGAGATTAATGTGATAACAATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTAACCTGTAAGAGTGAATATTGAGATTAATGTGATAACAATTG  1018

seq1  TCAAAAGGAAATACATTAAAATTGGCAGAAGAGTAAGTGTTTTTTGAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGAAATACATTAAAATTGGCAGAAGAGTAAGTGTTTTTTGAACA  1068

seq1  ACAGTGTGGCTAATGATTTTTTGAATTCTGTGTTTTTGTTTGTTTTTTTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGGCTAATGATTTTTTGAATTCTGTGTTTTTGTTTGTTTTTTTA  1118

seq1  TTTTGTTTTGTTTTCCTAAATGCCATTGGAATACAAATGGAAGAAGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTCCTAAATGCCATTGGAATACAAATGGAAGAAGAATT  1168

seq1  C  1200
      |
seq2  C  1169