BAC Information

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BAC

Clone NameB6Ng01-026K09
Chromosome4 (Build37)
Map Location 146,364,571 - 146,481,280
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026K09.bB6Ng01-026K09.g
ACCDH857631DH857632
length8361,120
definitionDH857631|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K09, 5' end.DH857632|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,480,438 - 146,481,280)(146,364,571 - 146,365,201)
sequence
gaattctctgtgtaaccctggctttcctggaacgggttctatagacggag
ctggcatcaaactcagagatcctcttgcctttgcttcccgaatactcagt
ttaaaggcgtctgccaccacatccaggctccatcagtcttttcaggagct
cttgttcacaggaggaagagttcaaaaaggagtttgttgtcagtttatag
atgtgagctttagagaacgaagcaagaggtcctgagaagcagggcaccag
caaactgctggcctagggtctttgtgtaagactcatggcaggaactgaag
tggggcaatgaggagggggtgggttggccactccagttgtcccaatcatg
atcctgtcctattctaccttttaatcatgttctcatatatagattgcaaa
tatgttcatttgagggaagaaagcaatcaagaaagcagaaatcctttctt
aaatccctgtcttctggcccaggcattgcctttcagctgcagtgttgaaa
ttaagccaaacatggtgtcttgtatatagcagcagtttcttgcccagaaa
aaaaaaaataatcagatgaagaaatggttgttcctataatagtttatatg
aaattgatcgtcatgtctaggattccttggattgatgagagacagacaga
cagacagacagacagccttagagagacagacagacagagagacagagaga
gacagagagggacgagagagagtctagtctgatatgagtctgagagacga
tagagagcgagaggctctcgttgagtttctgttgcatcttggagatgaaa
gggttactctatctgacagattcagtctatcactga
gaattcatcagagaattcatacaggagagaaaccttacaaatgcaatgaa
tgtggcaaatgctttactgaaaaaagcagtctgagaattcatcagagaat
tcatacaggagagaaaccttacaaatgcagtgaatgtggcaaatgcttta
ctgtaaaaagcagtctgagaattcatcagaaaattcatacaggagagaaa
ccttacaaatgcagtgaatgtgacaaatgctttaccaaaccatcccatct
tagtattcatcagagaattcatacaggagagaaaccttacaaatgcagtg
aatgtgaaaaatgctttactgtaaaaagcagtctgagaattcatcagaaa
attcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctt
taccaaaccatcccatcttagtattcatcagagaattcatacaggagaga
aaccttacaaatgcagtgaatgtgaaaaatgctttaatgaaaaaaacatt
ctgaaaattcatcagagaattcatacaggagagagaccttacaaatgtcg
tgaatgtgacaaatgcttttcccgaaaattccatcttggtattcatcaga
gaattcatacaggaaagaaaccttacaaatgtagtgaatgtgacaaatgc
tttactacaaaaggcaatctgataattcatcagagaattcatacaagaga
gaaacctcacaaatgtagtgaatgtgacaaatgctttacccagaaatccc
atcttagtattcatcagaaaattcatacaggagagaaaccttacaaatag
attgtatgtgacaaatacaatactcacaatgtcagtcttagaatcatcag
ttatttcatacagtagagaatctttataaatgaagtgacgagacaatcct
ttaccaagatatatcatctcaaaattcatagagaatacttagagaagaca
acttttcaaataatatgtagtatgattcctttctttgggctatttctaga
ctgtaacagtgattcttacaggctagaaacttaactctgcatgtatgaag
aaaatcttttgacttcatttcagtcagaaagaacatctagaacttttaag
taagaaatttgttgggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146480438_146481280
seq2: B6Ng01-026K09.b_48_883 (reverse)

seq1  TCAGTGATAGACTGGAATCTGTCAGATGGAGTAAACCCTTTCATCTCCAA  50
      ||||||||||||| ||||||||||||| |||| |||||||||||||||||
seq2  TCAGTGATAGACT-GAATCTGTCAGATAGAGT-AACCCTTTCATCTCCAA  48

seq1  GATGCAACAGAAACTCAACGAGAGCCTCTCGCCTCTCTATCTGTCTCTCT  100
      ||||||||||||||||||||||||||||||| ||||||||| ||||||| 
seq2  GATGCAACAGAAACTCAACGAGAGCCTCTCG-CTCTCTATC-GTCTCTCA  96

seq1  GTCTCTGTCTCTGTCTCTGTCTCTCTCTCTGTCCCTCTCTGTCTCTCTCT  150
      | |||  | || | ||  | ||||||||| ||||||||||||||||||||
seq2  GACTC-ATATCAGACT-AGACTCTCTCTC-GTCCCTCTCTGTCTCTCTCT  143

seq1  GTCTCTCTGTCTGTCTGTCTCTCTAAGGCTGTCTGTCTGTCTGTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCTGTCTGTCTCTCTAAGGCTGTCTGTCTGTCTGTCTGTCT  193

seq1  GTCTCTCATCAATCCAAGGAATCCTAGACATGACGATCAATTTCATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCATCAATCCAAGGAATCCTAGACATGACGATCAATTTCATATAA  243

seq1  ACTATTATAGGAACAACCATTTCTTCATCTGATTATTTTTTTTTTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATAGGAACAACCATTTCTTCATCTGATTATTTTTTTTTTTCTGG  293

seq1  GCAAGAAACTGCTGCTATATACAAGACACCATGTTTGGCTTAATTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAACTGCTGCTATATACAAGACACCATGTTTGGCTTAATTTCAAC  343

seq1  ACTGCAGCTGAAAGGCAATGCCTGGGCCAGAAGACAGGGATTTAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCTGAAAGGCAATGCCTGGGCCAGAAGACAGGGATTTAAGAAAG  393

seq1  GATTTCTGCTTTCTTGATTGCTTTCTTCCCTCAAATGAACATATTTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGCTTTCTTGATTGCTTTCTTCCCTCAAATGAACATATTTGCAA  443

seq1  TCTATATATGAGAACATGATTAAAAGGTAGAATAGGACAGGATCATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATATGAGAACATGATTAAAAGGTAGAATAGGACAGGATCATGATT  493

seq1  GGGACAACTGGAGTGGCCAACCCACCCCCTCCTCATTGCCCCACTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAACTGGAGTGGCCAACCCACCCCCTCCTCATTGCCCCACTTCAGT  543

seq1  TCCTGCCATGAGTCTTACACAAAGACCCTAGGCCAGCAGTTTGCTGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCATGAGTCTTACACAAAGACCCTAGGCCAGCAGTTTGCTGGTGC  593

seq1  CCTGCTTCTCAGGACCTCTTGCTTCGTTCTCTAAAGCTCACATCTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTCAGGACCTCTTGCTTCGTTCTCTAAAGCTCACATCTATAAA  643

seq1  CTGACAACAAACTCCTTTTTGAACTCTTCCTCCTGTGAACAAGAGCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACAAACTCCTTTTTGAACTCTTCCTCCTGTGAACAAGAGCTCCT  693

seq1  GAAAAGACTGATGGAGCCTGGATGTGGTGGCAGACGCCTTTAAACTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACTGATGGAGCCTGGATGTGGTGGCAGACGCCTTTAAACTGAGT  743

seq1  ATTCGGGAAGCAAAGGCAAGAGGATCTCTGAGTTTGATGCCAGCTCCGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGAAGCAAAGGCAAGAGGATCTCTGAGTTTGATGCCAGCTCCGTC  793

seq1  TATAGAACCCGTTCCAGGAAAGCCAGGGTTACACAGAGAATTC  843
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACCCGTTCCAGGAAAGCCAGGGTTACACAGAGAATTC  836

seq1: chr4_146364571_146365201
seq2: B6Ng01-026K09.g_572_1185

seq1  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTCGTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTCGTGAATG  50

seq1  TGACAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  100

seq1  ATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACT  150

seq1  ACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAACC  200

seq1  TCACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTA  250

seq1  GTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTA  300

seq1  TGTGACAAATACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATT  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGACAAATACAATACTCACAATGTCAGTCTTAG-AATCATCAGTTATT  349

seq1  TCATACAGTAGAGAATCTTTATAAATGAAGTGAACGAGACAATCCTTTAC  400
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATACAGTAGAGAATCTTTATAAATGAAGTG-ACGAGACAATCCTTTAC  398

seq1  CAAGATATATCATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAAC  450
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  CAAGATATATCATCTCAAAATTCA-TAGAGAATACTTAGAGAAGAC-AAC  446

seq1  TTTTCAAATATATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTA  500
      ||||||||||   |||| |||||| |||||||  ||||| |||||| |||
seq2  TTTTCAAATAATATGTA-GTATGATTCCTTTC--TTTGGGCTATTT-CTA  492

seq1  GACTGTAACAGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTA  550
      ||||||||||||| || ||||||||||||||||||||||| |||| ||||
seq2  GACTGTAACAGTG-ATTCTTACAGGCTAGAAACTTAACTC-TGCA-TGTA  539

seq1  TGAAGAAATATC-TTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAA  599
      |||||||| ||| ||||||||||||||| |||||| ||||||||| ||||
seq2  TGAAGAAA-ATCTTTTGACTTCATTTCA-GTCAGAAAGAACATCT-AGAA  586

seq1  CTTTTTAGGGTAAAGAATTTTGTTGGGGAAAA  631
      ||||| ||    ||||| ||||||||| ||| 
seq2  CTTTTAAG---TAAGAAATTTGTTGGGAAAA-  614