BAC Information

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BAC

Clone NameB6Ng01-026K22
Chromosome4 (Build37)3 (Build37)
Map Location 10,663,131 - 10,663,71117,031,385 - 17,032,242
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026K22.bB6Ng01-026K22.g
ACCDH857653DH857654
length884856
definitionDH857653|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K22, 5' end.DH857654|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,663,131 - 10,663,711)(17,031,385 - 17,032,242)
sequence
gaattctttggtttctccatctatggtaattgagagtttggctgggtata
gtagcctgggctggcatttgtgttctcttagtgtctgtataacatctgtt
caggctcttctggctttcatagtctctggtgaaaaatctggtgtaattct
gataggcttgcctttatatgttacttgaccgttttcccttactgctttta
gtattctatcttaatttagtgcatttgtttttctgaatattatgtgtgga
agaatttcttttctggtccagtctatttggagttctgtaggcttcttgta
tgttcatgggcatctctttctttagatttgggacgttttcttctataata
ttgtttaagatatttgcttttcctttgagttgaaatacttcattctcatc
cactcctattatctgtaggtttggtcttctcattgtgtcctggatttcct
gatttttgtgctgatgttctctatggaatcttctgcacctgagattctct
cttccatctcttgtattctgttgctgatgctggcatctatggttccagat
ttctttcctagggtttctatctccagcgttgcctcactttgggttttctt
tattgtgtctatttccctttttaggtctagtatggttttgttgatttcca
ttacctgtttggatgtgttttcctgtttttctttaaggacttctacctgt
ttggttgattcttacgtttacctttcaccatatggtaatctctggagtta
gttgttatagttgtctctgtttagagattgttcctctggagattctgtta
ccctctatcagcagacctgggagactagctctttcctctgagtttcagtg
gttagatcagtctctgcatgcaagctcacctctt
gaattcctgttctctccaatacttttaacatgaaacatgaatgggttttg
tattttgttaaaggttttcctgcatccaatgagatgatcatgtggtttct
ttttttcctttgagtttgtctatgtagcggggtttaaggtcacagctatg
aagctagatgtgtctgaataccttgggtttgagctgcaactggggtgtgt
tctgtgtgggatcaggtctgggtctctgctgccagctggcacaggtggga
accagaaggtgcctaggtctttggctgggtaggtaatctgcttccccggt
acacagggtctggaggtggggtttaaggtttcacctgtgaagccagctgt
gtttgaattcctggggggagtggggaatcaagctgcaactgggatatgtg
ctgtgtgggatcaggtccagcactgggtcctagtagatttttttttcata
taatgatttaaatacttgtcactaattatatacaactcattctagaagtc
aataatacaataagggacacttcctattaatttcatgaatccaatatgtc
tcttaaacagaatcagataagcaaaataatgaagggcaaattatagatgg
gtacttcttatttatttacatagcaattgttgccccacctgcaggccccc
atctcccagagttccccacccactcccctcccttcctctctgagaggcac
ccaggactcaaagtgatatgccaaacagtagagagattgaagctgaacca
tctacttccaatagtcaaacaagtctcctagtctgtgtgttgactgcacc
aacacatgcccaaaatatttagcgtttttttatggtggtgatggtaggtt
cttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10663131_10663711
seq2: B6Ng01-026K22.b_47_582 (reverse)

seq1  ATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGT  50

seq1  GCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAA  100
      |||||||| ||||||||||||||| |||||| |||               
seq2  GCAGAAGATTCCATAGAGAACATCAGCACAAAAAT---------------  85

seq1  ATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATACAGGACACAATGA  150
                                  |||||||| |||||||||||||
seq2  ----------------------------CAGGAAATCCAGGACACAATGA  107

seq1  GAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAA  200
      ||||||||||||||| ||||||||||||||||||||||||||  ||||||
seq2  GAAGACCAAACCTACAGATAATAGGAGTGGATGAGAATGAAGTATTTCAA  157

seq1  CTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCC  250
      |||||||||  |||||| ||||| ||||| ||||| ||||||||| ||||
seq2  CTCAAAGGAAAAGCAAATATCTTAAACAATATTATAGAAGAAAACGTCCC  207

seq1  AAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTC  257

seq1  CAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGA  350
      |||||||||||||||||||||||||||| |||  |||||||||| |||||
seq2  CAAATAGACTGGACCAGAAAAGAAATTCTTCC--ACACATAATATTCAGA  305

seq1  ACACCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAA  400
      | | |||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAACAAATGCACTAAATTAAGATAGAATACTAAAAGCAGTAAGGGAAAA  355

seq1  AGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTT  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTT  405

seq1  CACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACA  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCAGAGACTATGAAAGCCAGAAGAGCCTGAACAGATGTTATACAGACA  455

seq1  CTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTC  505

seq1  AATTACCATAGATGGAGAAACCAAAGTATTC  581
      |||||||||||||||||||||||||| ||||
seq2  AATTACCATAGATGGAGAAACCAAAGAATTC  536

seq1: chr3_17031385_17032242
seq2: B6Ng01-026K22.g_67_922 (reverse)

seq1  CAAAAGAACCTACCATCACCACCACTAACAAAAACGCTAAATATTTTGGG  50
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  CAAAAGAACCTACCATCACCACCA-TAA-AAAAACGCTAAATATTTTGGG  48

seq1  CATGTGTTGGTGCAGTCAACCCACAGACTAGGAGACTTGTTTGACTATTG  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATGTGTTGGTGCAGTCAACACACAGACTAGGAGACTTGTTTGACTATTG  98

seq1  GAAGTAGATGGTTCAGCTTCAATCTCTCTACTGTTTGGCATATCACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGATGGTTCAGCTTCAATCTCTCTACTGTTTGGCATATCACTTTG  148

seq1  AGTCCTGGGTGCCTCTCAGAGAGGAAGGGAGGGGAGTGGGTGGGGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGGTGCCTCTCAGAGAGGAAGGGAGGGGAGTGGGTGGGGAACTC  198

seq1  TGGGAGATGGGGGCCTGCAGGTGGGGCAACAATTGCTATGTAAATAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGGGGCCTGCAGGTGGGGCAACAATTGCTATGTAAATAAATA  248

seq1  AGAAGTACCCATCTATAATTTGCCCTTCATTATTTTGCTTATCTGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACCCATCTATAATTTGCCCTTCATTATTTTGCTTATCTGATTCT  298

seq1  GTTTAAGAGACATATTGGATTCATGAAATTAATAGGAAGTGTCCCTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAGACATATTGGATTCATGAAATTAATAGGAAGTGTCCCTTATT  348

seq1  GTATTATTGACTTCTAGAATGAGTTGTATATAATTAGTGACAAGTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTGACTTCTAGAATGAGTTGTATATAATTAGTGACAAGTATTTA  398

seq1  AATCATTATATGAAAAAAAAATCTACTAGGACCCAGTGCTGGACCTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATATGAAAAAAAAATCTACTAGGACCCAGTGCTGGACCTGATC  448

seq1  CCACACAGCACATATCCCAGTTGCAGCTTGATTCCCCACTCCCCCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGCACATATCCCAGTTGCAGCTTGATTCCCCACTCCCCCCAGGA  498

seq1  ATTCAAACACAGCTGGCTTCACAGGTGAAACCTTAAACCCCACCTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACACAGCTGGCTTCACAGGTGAAACCTTAAACCCCACCTCCAGA  548

seq1  CCCTGTGTACCGGGGAAGCAGATTACCTACCCAGCCAAAGACCTAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTACCGGGGAAGCAGATTACCTACCCAGCCAAAGACCTAGGCAC  598

seq1  CTTCTGGTTCCCACCTGTGCCAGCTGGCAGCAGAGACCCAGACCTGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTCCCACCTGTGCCAGCTGGCAGCAGAGACCCAGACCTGATCC  648

seq1  CACACAGAACACACCCCAGTTGCAGCTCAAACCCAAGGTATTCAGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAACACACCCCAGTTGCAGCTCAAACCCAAGGTATTCAGACACA  698

seq1  TCTAGCTTCATAGCTGTGACCTTAAACCCCGCTACATAGACAAACTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTCATAGCTGTGACCTTAAACCCCGCTACATAGACAAACTCAAA  748

seq1  GGAAAAAAAGAAACCACATGATCATCTCATTGGATGCAGGAAAACCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAGAAACCACATGATCATCTCATTGGATGCAGGAAAACCTTTA  798

seq1  ACAAAATACAAAACCCATTCATGTTTCATGTTAAAAGTATTGGAGAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATACAAAACCCATTCATGTTTCATGTTAAAAGTATTGGAGAGAAC  848

seq1  AGGAATTC  858
      ||||||||
seq2  AGGAATTC  856