BAC Information

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BAC

Clone NameB6Ng01-026O21
Chromosome4 (Build37)19 (Build37)
Map Location 35,705,868 - 35,706,93849,054,380 - 49,054,945
singlet/doubletsingletsinglet
Overlap geneLingo2
Upstream gene1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026O21.bB6Ng01-026O21.g
ACCDH857817DH857818
length1,061903
definitionDH857817|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O21, 5' end.DH857818|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,705,868 - 35,706,938)(49,054,380 - 49,054,945)
sequence
gaattcccagagataagattccatctcttctgcttgggaacatggtcatg
agtttacttgtgggacatttcataaagtgtgaatgaaacacccccaggac
catcaagtcagaaagacaaaagaacaagttggttctgattttaccaacag
ttcttctgatgtgacctacactttcctcaagggtgccttcacctgacaca
gcccacctgttttgcatccactggattggctgaactcattctgccaagat
agtaataaaaagaataatcttgagaaataataatgcaaattaatttaaac
caataagtatttaccatttgagtatatgacttgcattgtgctaaaacatc
ttctcatgttttaccagtatcaagactactcctgagagcttgtaattatg
gctctcaagtcacagatgagtacaagatgtctcaggaagttggtgcaatt
aacttactgaaagatgtacaactaaccattcaaatagagtaaagatcaaa
ggtttgctgagtccaaatgcagttcttatccatgtatgaggaagaagaaa
aattatgggtagtcttaccttttatgctggatgtacagtgtgaattctgt
ttaatggactgccatattgtgaaatgttacttctgaagacacgaatccaa
atttgtattactagtttccactaagataaatatgtgtataccaaataagg
atgtgccagggggaacctagagcagtcctgtaatttattcatttaaagat
tgtttctagacaactcccatgtagtactactctatttgtaaccactttgc
tattcaattaaataattagaaataaccatatacattatatattaagggtc
agcatttggataagagttctgttggaataccatttgactgactaattgta
gcacatcaaagcagatttggaaccccaaagagagtagaaaccccattcct
gccacatacacttcatgcaaagatgatgcattgatctcactgcacaaact
caagagctagcatcaaagttcttgttcccatagaaaatcaaagcagttgt
tgtttgttttg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtctct
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgagt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtaaagtaccttctacttctattttgtgaaatagtttgtgcaggactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctggacttttttttgctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgactcaactt
ttggttcctgttatctgtccagaaatttgtccatttcgtccaggttttcc
agttttgttgagtataaccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcattttcttattttgtta
atcaagattttgtccattgtgcccttttagtgagtctagctaagggttta
tctatctttgttgattttctcaaagaaccaacttcttcgtttgggtaaat
tctttgaaatagttcttctggtttcattgggtgatttcacccctgagttt
gaatatttcctgccgactactcctctgggtgaattgcttccttattctag
agc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35705868_35706938
seq2: B6Ng01-026O21.b_47_1107 (reverse)

seq1  CAAAAC-AACAA-AACTGCTTTGATTTTTCTAATTGGGGAACAAGAACTT  48
      |||||| ||||| ||||||||||| |||||||    |||||||||||| |
seq2  CAAAACAAACAACAACTGCTTTGA-TTTTCTA---TGGGAACAAGAAC-T  45

seq1  TTGAATTGCTAGCTCTTGGGTTTGTGCAGTGGAGATCAATGCATTCATCT  98
      ||||  |||||||||||| ||||||||||| |||||||||||| ||||| 
seq2  TTGA--TGCTAGCTCTTGAGTTTGTGCAGT-GAGATCAATGCA-TCATC-  90

seq1  TTTGCATGAAGTGTATGTGGCAGGAATGGGGTTTTCTACTTCTCTTTTGG  148
      ||||||||||||||||||||||||||||||| ||||||| |||| |||||
seq2  TTTGCATGAAGTGTATGTGGCAGGAATGGGG-TTTCTAC-TCTC-TTTGG  137

seq1  GGTTCCAAATCTGCTTTGATGTGCTACAATTTAGTCAGTCAAATGGTATT  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTTCCAAATCTGCTTTGATGTGCTACAA-TTAGTCAGTCAAATGGTATT  186

seq1  CCAACAGAACTCTTATCCAAATGCTGACCCTTAATATATAATGTATATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAACTCTTATCCAAATGCTGACCCTTAATATATAATGTATATGG  236

seq1  TTATTTCTAATTATTTAATTGAATAGCAAAGTGGTTACAAATAGAGTAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAATTATTTAATTGAATAGCAAAGTGGTTACAAATAGAGTAGT  286

seq1  ACTACATGGGAGTTGTCTAGAAACAATCTTT-AATGAATAAATTACAGGA  347
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTACATGGGAGTTGTCTAGAAACAATCTTTAAATGAATAAATTACAGGA  336

seq1  CTGCTCTAGGTT-CCCCTGGCACATCCTTATTTGGTATACACATATTTAT  396
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAGGTTCCCCCTGGCACATCCTTATTTGGTATACACATATTTAT  386

seq1  CTTAGTGGAAACTAGTAATACAAATTTGGATTCGTGTCTTCAGAAGTAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGAAACTAGTAATACAAATTTGGATTCGTGTCTTCAGAAGTAAC  436

seq1  ATTTCACAATATGGCAGTCCATTAAACAGAATTCACACTGTACATCCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAATATGGCAGTCCATTAAACAGAATTCACACTGTACATCCAGC  486

seq1  ATAAAAGGTAAGACTACCCATAATTTTTCTTCTTCCTCATACATGGATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTAAGACTACCCATAATTTTTCTTCTTCCTCATACATGGATAA  536

seq1  GAACTGCATTTGGACTCAGCAAACCTTTGATCTTTACTCTATTTGAATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATTTGGACTCAGCAAACCTTTGATCTTTACTCTATTTGAATGG  586

seq1  TTAGTTGTACATCTTTCAGTAAGTTAATTGCACCAACTTCCTGAGACATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTACATCTTTCAGTAAGTTAATTGCACCAACTTCCTGAGACATC  636

seq1  TTGTACTCATCTGTGACTTGAGAGCCATAATTACAAGCTCTCAGGAGTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCATCTGTGACTTGAGAGCCATAATTACAAGCTCTCAGGAGTAG  686

seq1  TCTTGATACTGGTAAAACATGAGAAGATGTTTTAGCACAATGCAAGTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATACTGGTAAAACATGAGAAGATGTTTTAGCACAATGCAAGTCAT  736

seq1  ATACTCAAATGGTAAATACTTATTGGTTTAAATTAATTTGCATTATTATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAATGGTAAATACTTATTGGTTTAAATTAATTTGCATTATTATT  786

seq1  TCTCAAGATTATTCTTTTTATTACTATCTTGGCAGAATGAGTTCAGCCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATTATTCTTTTTATTACTATCTTGGCAGAATGAGTTCAGCCAA  836

seq1  TCCAGTGGATGCAAAACAGGTGGGCTGTGTCAGGTGAAGGCACCCTTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGATGCAAAACAGGTGGGCTGTGTCAGGTGAAGGCACCCTTGAG  886

seq1  GAAAGTGTAGGTCACATCAGAAGAACTGTTGGTAAAATCAGAACCAACTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTAGGTCACATCAGAAGAACTGTTGGTAAAATCAGAACCAACTT  936

seq1  GTTCTTTTGTCTTTCTGACTTGATGGTCCTGGGGGTGTTTCATTCACACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTGTCTTTCTGACTTGATGGTCCTGGGGGTGTTTCATTCACACT  986

seq1  TTATGAAATGTCCCACAAGTAAACTCATGACCATGTTCCCAAGCAGAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATGTCCCACAAGTAAACTCATGACCATGTTCCCAAGCAGAAGA  1036

seq1  GATGGAATCTTATCTCTGGGAATTC  1071
      |||||||||||||||||||||||||
seq2  GATGGAATCTTATCTCTGGGAATTC  1061

seq1: chr19_49054380_49054945
seq2: B6Ng01-026O21.g_404_971 (reverse)

seq1  GCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACTGCAGGA  50
      |||||||  || |||||||| ||||||||| |||||||||| | ||||||
seq2  GCTCTAG--AATAAGGAAGC-AATTCACCC-AGAGGAGTAGTCGGCAGGA  46

seq1  AATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTA  100
      |||| ||||||||||||||||||||| ||||   ||||| ||||||||||
seq2  AATATTCAAACTCAGGGGTGAAATCACCCAA--TGAAACCAGAAGAACTA  94

seq1  -TTCAAAGAA-TTAACCAAACG-AGGAGTTGGTTCTTTGAGAAAATCAAC  147
       ||||||||| ||| ||||||| || ||||||||||||||||||||||||
seq2  TTTCAAAGAATTTACCCAAACGAAGAAGTTGGTTCTTTGAGAAAATCAAC  144

seq1  -AAGATAGATAAACCCTTAGCTAGACTCACT-AAAGGGCAC-AGGGACAA  194
       |||||||||||||||||||||||||||||| ||||||||| | ||||||
seq2  AAAGATAGATAAACCCTTAGCTAGACTCACTAAAAGGGCACAATGGACAA  194

seq1  AATCCTAATTAACAAAATCAG-AAATGAAAAGGGAGACATAACAACAGAT  243
      |||| | ||||||||||| || ||||||||||||||||||||||||||||
seq2  AATCTTGATTAACAAAATAAGAAAATGAAAAGGGAGACATAACAACAGAT  244

seq1  CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATACTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATACTC  294

seq1  AACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACC  343
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATAAC  344

seq1  AGGTACC-AAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCAT  392
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCAT  394

seq1  ATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAA  442
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCAAAAAAAA  444

seq1  GCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA  492
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA  494

seq1  GATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGG  542
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATCTAATTCCAGTCCTGCACAAACTATTTCACAAAATAGAAGTAGAAGG  544

seq1  TACTCTACCCAACTCATTTTATGA  566
      |||| |||||||||||||||||||
seq2  TACTTTACCCAACTCATTTTATGA  568