BAC Information

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BAC

Clone NameB6Ng01-027B06
Chromosome4 (Build37)
Map Location 152,431,501 - 152,603,248
singlet/doubletdoublet
Overlap genenone
Upstream geneNol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B06.bB6Ng01-027B06.g
ACCDH857923DH857924
length1,041701
definitionDH857923|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B06, 5' end.DH857924|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,602,186 - 152,603,248)(152,431,501 - 152,432,145)
sequence
gaattcacgaggagacggccacagcggtagaggagagggcttgctgtgta
ccaggcctggccctgtacaatttaatccctccaccagctcattttacagc
tggaaaacagaagcaagtagccatccaagtggcacccaactgaggctgct
cctaattctagatgctgcggctgcctgagatttacaagcccctcccccac
ccagtgggtgcttcagtcattttcaagaaatgattccctaggctcggaag
aatgccttcctttcctagaggcccacagaggcagcgaaggatggcctgtc
cacacttctgcctgactgctaacagtccaagctctccataggacacaggt
ctgccagtccaccctggatctggtcaggctgcctaggttccccgttcagc
cgtgtcttagttactataccattgctgtggtcccagtaccctgatagagc
aacctaatggagaaggaaggagggaagccctgttggcaggagcagaagct
ggctggtcccattgtatctgtactccgcagagagcagcaaatgaagtgtg
cagctggctctccccgtcttaaccagtccagaatcctcactttcaggagt
tggcccacacaccattaagacgggtcctctcccaggccattctagattcc
ctcaagttgacatttgaagctaatcattacgaatgtaaagacacctgccg
tggttggttttaatgtcaacttggcaggagttagaatcaactgagtctgg
agcttcagctgagggactgtgctgattgcctttctatgtgggaagtccca
ccccaacaacagtgacaccttctgctagcagacagataaaacggagcagc
agaagaaggcagctcccgtggctctcctgcctctctatcaccacctaact
gatttcccggtgctgccgtgcttcctgatatcagaatcaacctttccagg
tcccaacatctgccttctctcaaattctatcttccagctcctgataaaaa
catgagcccggatcattccggtatttcagctctaaatccaa
gaattctttcggaagtagaacattacaggaggaagtatgtcactgggggt
gggccttaagggtttgacggcacatcccactttctgtgctctctctctct
ctctctctctctctctctctctctctctgtctgtctatctctctctatct
ctctccacttcctgtatacagacaaaatgtgagcagccagtttgccgctc
ttgcttctgttatggaatcttgctctaaagttgtcagctaaaataaacta
tttctttttcccgttgctgtatttgattatagcaacagaaaagtaatcaa
ttcaaagacgcaccctagctgcggacggcacccttccatgggctcagatc
ttgcgatgatagaggacagcaagctgagcaccagcatccaccttcccgac
tgtggatgcaaagtgagcaggcacctcgtgttcctgctgcggagccctcc
ctgccatgcttggactgtgtcctcaaactgtgagccaaagcagacctttc
ttcccaagctgactttgtcgggtgttttagcacagcaacgagaatgtaaa
ctgctgtaccatcctatgtctgacggtgaggacatgggatgcttgactgt
gacacactcacaagtgggttgtgtcacacggtggttgacacagatggtcc
agatatagaggggcagcttggagaatcatggggataatattcagacaaga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_152602186_152603248
seq2: B6Ng01-027B06.b_46_1086 (reverse)

seq1  TTGGAACTTAGAGCTGGAAAAAGCCGGTGAATGATCAGGGCTCATCGTCT  50
      |||| | |||||||||  |||  |||  |||||||| |||||||| || |
seq2  TTGG-ATTTAGAGCTG--AAATACCG--GAATGATCCGGGCTCAT-GT-T  43

seq1  GTTATCAGGAGCTGGGAAGATAAGAATGTTTGAGAGAAAGGCAGATGTTG  100
       |||||||||||| ||||||| ||||  |||||||| |||||||||||||
seq2  TTTATCAGGAGCT-GGAAGAT-AGAA--TTTGAGAG-AAGGCAGATGTTG  88

seq1  GGAACCTGGAAAGGTTGATTCTGATATCAGGGAAGCACCGGCAGCAACCG  150
      || |||||||||||||||||||||||||| ||||||| ||||||||  | 
seq2  GG-ACCTGGAAAGGTTGATTCTGATATCA-GGAAGCA-CGGCAGCA--CC  133

seq1  GGGAAATCAGTTAGGTGGTGATAGAGGAGGCAGGAGAGCCAACGGGGAGC  200
      ||||||||||||||||||||||||| |||||||||||||||   ||||||
seq2  GGGAAATCAGTTAGGTGGTGATAGA-GAGGCAGGAGAGCCA--CGGGAGC  180

seq1  TGCCTTCCTTCTGCTGCTCCGTTTTATCTGTCTGCTAGCAGAAGGTGTCA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTT-CTTCTGCTGCTCCGTTTTATCTGTCTGCTAGCAGAAGGTGTCA  229

seq1  CCTGTTGTTGGGGTGGGACTTCCCACATAGAAAGGCAATCAGCACAGTCC  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGTTGTTGGGGTGGGACTTCCCACATAGAAAGGCAATCAGCACAGTCC  278

seq1  CTCAGCTGAAGCTCCAGACTCAGTTGATTCTAACTCCTGCCAAGTTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGAAGCTCCAGACTCAGTTGATTCTAACTCCTGCCAAGTTGACA  328

seq1  TTAAAACCAACCACGGCAGGTGTCTTTACATTCGTAATGATTAGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAACCACGGCAGGTGTCTTTACATTCGTAATGATTAGCTTCAA  378

seq1  ATGTCAACTTGAGGGAATCTAGAATGGCCTGGGAGAGGACCCGTCTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACTTGAGGGAATCTAGAATGGCCTGGGAGAGGACCCGTCTTAAT  428

seq1  GGTGTGTGGGCCAACTCCTGAAAGTGAGGATTCTGGACTGGTTAAGACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGGGCCAACTCCTGAAAGTGAGGATTCTGGACTGGTTAAGACGG  478

seq1  GGAGAGCCAGCTGCACACTTCATTTGCTGCTCTCTGCGGAGTACAGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCAGCTGCACACTTCATTTGCTGCTCTCTGCGGAGTACAGATAC  528

seq1  AATGGGACCAGCCAGCTTCTGCTCCTGCCAACAGGGCTTCCCTCCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACCAGCCAGCTTCTGCTCCTGCCAACAGGGCTTCCCTCCTTCCT  578

seq1  TCTCCATTAGGTTGCTCTATCAGGGTACTGGGACCACAGCAATGGTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTAGGTTGCTCTATCAGGGTACTGGGACCACAGCAATGGTATAG  628

seq1  TAACTAAGACACGGCTGAACGGGGAACCTAGGCAGCCTGACCAGATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGACACGGCTGAACGGGGAACCTAGGCAGCCTGACCAGATCCAG  678

seq1  GGTGGACTGGCAGACCTGTGTCCTATGGAGAGCTTGGACTGTTAGCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTGGCAGACCTGTGTCCTATGGAGAGCTTGGACTGTTAGCAGTC  728

seq1  AGGCAGAAGTGTGGACAGGCCATCCTTCGCTGCCTCTGTGGGCCTCTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGTGTGGACAGGCCATCCTTCGCTGCCTCTGTGGGCCTCTAGG  778

seq1  AAAGGAAGGCATTCTTCCGAGCCTAGGGAATCATTTCTTGAAAATGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGCATTCTTCCGAGCCTAGGGAATCATTTCTTGAAAATGACTG  828

seq1  AAGCACCCACTGGGTGGGGGAGGGGCTTGTAAATCTCAGGCAGCCGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCACTGGGTGGGGGAGGGGCTTGTAAATCTCAGGCAGCCGCAGC  878

seq1  ATCTAGAATTAGGAGCAGCCTCAGTTGGGTGCCACTTGGATGGCTACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATTAGGAGCAGCCTCAGTTGGGTGCCACTTGGATGGCTACTTG  928

seq1  CTTCTGTTTTCCAGCTGTAAAATGAGCTGGTGGAGGGATTAAATTGTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTTCCAGCTGTAAAATGAGCTGGTGGAGGGATTAAATTGTACA  978

seq1  GGGCCAGGCCTGGTACACAGCAAGCCCTCTCCTCTACCGCTGTGGCCGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCCTGGTACACAGCAAGCCCTCTCCTCTACCGCTGTGGCCGTC  1028

seq1  TCCTCGTGAATTC  1063
      |||||||||||||
seq2  TCCTCGTGAATTC  1041

seq1: chr4_152431501_152432145
seq2: B6Ng01-027B06.g_128_769

seq1  GGGTTTGACGGCACATCCCACTTTCTGTGCTCTCTCTCTCTCTCTCTCTC  50
      |||||||||||||||||||||||||||||    |||||||||||||||||
seq2  GGGTTTGACGGCACATCCCACTTTCTGTG----CTCTCTCTCTCTCTCTC  46

seq1  TCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTATCTCTCTCTATCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTATCTCTCTCTATCTCTCTC  96

seq1  CACTTCCTGTATACAGACAAAATGTGAGCAGCCAGTTTGCCGCTCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTGTATACAGACAAAATGTGAGCAGCCAGTTTGCCGCTCTTGCT  146

seq1  TCTGTTATGGAATCTTGCTCTAAAGTTGTCAGCTAAAATAAACTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATGGAATCTTGCTCTAAAGTTGTCAGCTAAAATAAACTATTTCT  196

seq1  TTTTCCCGTTGCTGTATTTGATTATAGCAACAGAAAAGTAATCAATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCGTTGCTGTATTTGATTATAGCAACAGAAAAGTAATCAATTCAA  246

seq1  AGACGCACCCTAGCTGCGGACGGCACCCTTCCATGGGCTCAGATCTTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCACCCTAGCTGCGGACGGCACCCTTCCATGGGCTCAGATCTTGCG  296

seq1  ATGATAGAGGACAGCAAGCTGAGCACCAGCATCCACCTTCCCGACTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAGGACAGCAAGCTGAGCACCAGCATCCACCTTCCCGACTGTGG  346

seq1  ATGCAAAGTGAGCAGGCACCTCGTGTTCCTGCTGCGGAGCCCTCCCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGTGAGCAGGCACCTCGTGTTCCTGCTGCGGAGCCCTCCCTGCC  396

seq1  ATGCTTGGACTGTGTCCTCAAACTGTGAGCCAAAGCAGACCTTTCTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGACTGTGTCCTCAAACTGTGAGCCAAAGCAGACCTTTCTTCCC  446

seq1  AAGCTGACTTTGTCGGGTGTTTTAGCACAGCAACGAGAATGTAAACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACTTTGTCGGGTGTTTTAGCACAGCAACGAGAATGTAAACTGCT  496

seq1  GTACCATCCTATGTCTGACGGTGAGGACAT-GGATGCTTGACTGTGACAC  549
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTACCATCCTATGTCTGACGGTGAGGACATGGGATGCTTGACTGTGACAC  546

seq1  ACTCACAAGTGGGTTGTGTCACACGGTGGTTGACACAGATGGTCCAGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAGTGGGTTGTGTCACACGGTGGTTGACACAGATGGTCCAGATA  596

seq1  TAGAGGGGCAGCTTGGAGAAGCATGGGGATAATATTCAGACAAGAG  645
      |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGAGGGGCAGCTTGGAGAATCATGGGGATAATATTCAGACAAGAG  642