BAC Information

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BAC

Clone NameB6Ng01-027D03
Chromosome9 (Build37)4 (Build37)
Map Location 84,909,632 - 84,910,34820,498,067 - 20,498,760
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBckdhb, EG666669, LOC666672
Downstream geneBC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D03.bB6Ng01-027D03.g
ACCDH858010DH858011
length937992
definitionDH858010|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D03, 5' end.DH858011|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,909,632 - 84,910,348)(20,498,067 - 20,498,760)
sequence
gaattctctgtgagggactttgttggctgctattcctgaaaaaatgttca
acatccctggtcattgtggcaatgctcatcataggaccctgagattccac
ctcactccagtcagaatggctaatgtgcatattcacgtgacagcagatgc
tggcaatgatgtgaaaaaaaacgaacactcctccattgtcggtgggattg
caggcttgagtgcttctctggagccaagtgcggattgcctacccaacttc
atgtaataagtcaaaacaaaatccaaaacaataaccaacaaacaaaacac
acacgcataaccatctgacactgaaatgccctgtaaaagcattttccata
agggatgctcaatctgtgtttgatactaaagatgcagttttgtttgtata
tgtgtggtactaacccttcactcaaagcaactatcactaaaaaatcatga
tgatatttcttcattcctgagtgaagcctgagaggtactgtaagaaggcc
actctgatgcctccaccaactgagaggagccacctgggttccagagaatt
gctttttgcagtcatcgctctggccttaccaaccttcccataatagagaa
atgaggtgttcaagagaacctgaaagctgattgatctaaattacagacac
tttctttctgaactgaaatgaatccaaatgattcattcctttataaaact
gcttccttttctcaagcacatgctattatgcccactttttatatcttatc
tctctcagattagtcataaaattttagtttcttccgtgtcacacaaaata
accaatgttaatcctacctttgagtagcattgcaaaagtctttctcttca
gataccattttactcagataagctacattggtgtttgaagatgatccttg
gacagcttgcttctactatggaaagatctatggtatg
gaattctctgcattccgattctatcctgcctgcctcgatcaccttctttt
ctggactactcagatgcttatatttgcacccagacaatggatatggaacc
ctgtggatgagttatggaaaaactgggaaatactgatcacagtggccacc
atttaagatgaccgttcttctcaatgaacagggatcccagaaatatctcg
caccctgcaccaccaaggtgagaaaattggaaatctgatcagaggcaccc
aacttgtttactattgatgtctgctgggtctgggttccctcgagaagata
cacatttctgagccgagactggacgtcccctgtaaatcaaatatctggtg
gagtgggggagaacaggtttggtgctctggagtatatgagaaactattct
gcatgaagaaaaagaaatgtccataaataagttccaagaaaagatggagt
atgcaactgcttcaaataagataatggcagtaatgctaactaacctcaag
aacacataaaatgaaaatgataatgaaaattagtggcaacattgttcatc
aagggactaccaatggccataatgaaactgtttttgatggtgtaaatttt
gtttgtttgtttgtttgtttgtattctgagaatagaagccagattgcaat
agcttgactttgtaatgttgggtaagcaggggcatctcaaatagtaatca
actttccaagaagttctattaagatagaggaaataaaaaaaggctgtgta
agttttcagtgtttatttagaagcttagcagttatcatattaagatctga
gaacactgggctagtaatggtccattgaaacttaaaatggagatgcccaa
aatgcacatcataagtacttgatctaatacctgggtacaaagtgagaaaa
ctttgtttagatttccctaccatcttaccagtactgtattggtaattgca
tccataagaaagcttgtcttattctttctattattaattcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84909632_84910348
seq2: B6Ng01-027D03.b_262_976

seq1  GCCAAGTGCAAATTGCATACCCAACTTCATGTAATAAGTCAAAACAAAAC  50
      |||||||||  ||||| |||||||||||||||||||||||||||||||| 
seq2  GCCAAGTGCGGATTGCCTACCCAACTTCATGTAATAAGTCAAAACAAAAT  50

seq1  CAAAAACAATAACCAACAAACAAAACACACACGCATAACCATCTGACACT  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAATAACCAACAAACAAAACACACACGCATAACCATCTGACACT  100

seq1  GAAATGCCCTGTAAAAGCATTTTCCATAAGGGATGCTCAATCTGTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCTGTAAAAGCATTTTCCATAAGGGATGCTCAATCTGTGTTTG  150

seq1  ATACTAAAGATGCAGTTTTGTTTGTATATGTGTGGTACTAACCCTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAGATGCAGTTTTGTTTGTATATGTGTGGTACTAACCCTTCACT  200

seq1  CAAAGCAACTATTACTAAAAAATCATGATGATATTTCTTCATTCCTGAGT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACTATCACTAAAAAATCATGATGATATTTCTTCATTCCTGAGT  250

seq1  GAAGCCTGAGAGGTACTGTAAGAAGGCCACTCAAGATGCCTCCACCAACT  300
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GAAGCCTGAGAGGTACTGTAAGAAGGCCACTC-TGATGCCTCCACCAACT  299

seq1  GAGAGGAGCCACCTGGGTTCCAGAGAATTGCTTTTTGCAGTCATCGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGCCACCTGGGTTCCAGAGAATTGCTTTTTGCAGTCATCGCTCT  349

seq1  GGCCTTACCAACCTTCCCATAATATAGAAATGAGGTGTTCAAGAGAACCA  400
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  GGCCTTACCAACCTTCCCATAATAGAGAAATGAGGTGTTCAAGAGAACCT  399

seq1  GAAAGCTGATTGATCTAAATTACAGACACTTTCATTCTGAACTGAAATGA  450
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGCTGATTGATCTAAATTACAGACACTTTCTTTCTGAACTGAAATGA  449

seq1  ATCCAAATGATTCATTCCTTTATAAAACTGCTTCC-TTTCTCAAGCACAT  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCCAAATGATTCATTCCTTTATAAAACTGCTTCCTTTTCTCAAGCACAT  499

seq1  GCTATTATGCCCAC-ATTTATATCTTATCTCTCTCAGATTAGTCATAAAA  548
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GCTATTATGCCCACTTTTTATATCTTATCTCTCTCAGATTAGTCATAAAA  549

seq1  TTATAAGTTTCTTCAGTGTCACACAAAATAACCAATGTTAATCCTACCTT  598
      || | ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TT-TTAGTTTCTTCCGTGTCACACAAAATAACCAATGTTAATCCTACCTT  598

seq1  TGAGTAGCATTGCAAAAAGTCTTTCTCTTCAGAAACCA-TTTACTCAGAT  647
      ||||||||||||| ||||||||||||||||||| |||| |||||||||||
seq2  TGAGTAGCATTGC-AAAAGTCTTTCTCTTCAGATACCATTTTACTCAGAT  647

seq1  AAGCTACATTGATGTTTGAAGATGATCACTTGGCAAGCTTGCCTCTACTA  697
      ||||||||||| ||||||||||||||| |||||  ||||||| |||||||
seq2  AAGCTACATTGGTGTTTGAAGATGATC-CTTGGACAGCTTGCTTCTACTA  696

seq1  TGGAAAGTATATATGGTATG  717
      ||||||| || |||||||||
seq2  TGGAAAG-ATCTATGGTATG  715

seq1: chr4_20498067_20498760
seq2: B6Ng01-027D03.g_369_1058 (reverse)

seq1  GTGAATAAATAATAAGAAAGAATAAGACAAGCTATCTTTATGAGATGCAA  50
      |||||| |||||| ||||||||||||||||||| || ||||| |||||||
seq2  GTGAATTAATAAT-AGAAAGAATAAGACAAGCTTTC-TTATG-GATGCAA  47

seq1  ATAACATATACAGTAACTGGTAAGATGGTAGGGAAATCTAAACAAAAGTT  100
       || || ||||||| |||||||||||||||||||||||||||| ||||||
seq2  TTACCA-ATACAGT-ACTGGTAAGATGGTAGGGAAATCTAAAC-AAAGTT  94

seq1  TTCTCACTTTGTACCCAGGTATTAGATC-AGTACTTATGATGTGCATTTT  149
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTCACTTTGTACCCAGGTATTAGATCAAGTACTTATGATGTGCATTTT  144

seq1  GGGCATCTCCATTTTAAGTTTC-ATGGACCATTACTAG-CCAGTGTTCTC  197
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GGGCATCTCCATTTTAAGTTTCAATGGACCATTACTAGCCCAGTGTTCTC  194

seq1  AGATCTTAATATGATAACTGCTAAGCTTCTAAATAAACACTGAAAACTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTAATATGATAACTGCTAAGCTTCTAAATAAACACTGAAAACTTA  244

seq1  CACAGCCTTTTTTTATTTCCTCTATCTTAATAGAACTTCTTGGAAAGTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTTTTTTTATTTCCTCTATCTTAATAGAACTTCTTGGAAAGTTG  294

seq1  ATTACTATTTGAGATGCCCCTGCTTACCCAACATTACAAAGTCAAGCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATTTGAGATGCCCCTGCTTACCCAACATTACAAAGTCAAGCTAT  344

seq1  TGCAATCTGGCTTCTATTCTCAGAATACAAACAAACAAACAAACAAACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCTGGCTTCTATTCTCAGAATACAAACAAACAAACAAACAAACAA  394

seq1  AATTTACACCATCAAAAACAGTTTCATTATGGCCATTGGTAGTCCCTTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACCATCAAAAACAGTTTCATTATGGCCATTGGTAGTCCCTTGA  444

seq1  TGAACAATGTTGCCACTAATTTTCATTATCATTTTCATTTTATGTGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATGTTGCCACTAATTTTCATTATCATTTTCATTTTATGTGTTCT  494

seq1  TGAGGTTAGTTAGCATTACTGCCATTATCTTATTTGAAGCAGTTGCATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTAGTTAGCATTACTGCCATTATCTTATTTGAAGCAGTTGCATAC  544

seq1  TCCATCTTTTCTTGGAACTTATTTATGGACATTTCTTTTTCTTCATGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTTCTTGGAACTTATTTATGGACATTTCTTTTTCTTCATGCAG  594

seq1  AATAGTTTCTCATATACTCCAGAGCACCAAACCTGCTCTTTCCTTATCCT  647
      ||||||||||||||||||||||||||||||||||| |||  ||   ||| 
seq2  AATAGTTTCTCATATACTCCAGAGCACCAAACCTGTTCTCCCCCACTCCA  644

seq1  ATATATCTTTGATTCATGAAAAATGTGCTGATTTTGGCTCAGAAATG  694
        | || ||||||| |      | || | | | | ||||||||||||
seq2  CCAGATATTTGATTTACAGGGGACGTCCAG-TCTCGGCTCAGAAATG  690