BAC Information

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BAC

Clone NameB6Ng01-027E17
Chromosome4 (Build37)
Map Location 27,303,893 - 27,426,824
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027E17.bB6Ng01-027E17.g
ACCDH858077DH858078
length609994
definitionDH858077|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E17, 5' end.DH858078|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,426,216 - 27,426,824)(27,303,893 - 27,304,892)
sequence
gaattcacttgattgtgatcctgacacaaagactgaagaatcattacaag
tgtgaggtcagacagttgtacttcacaagacttaaggtggcaaaagttgg
ggttggggcaggaagaaaacagtagtaagaagaaataagataaagagaca
cagagagcaaatggaaggacagagggaatgagggaaggaaaggagaaggt
gaaagggaaagagaggggcaggaaatgaaggatgggaaatgtctgttgca
ttttcaccttttactttttattcttttccttaatgccaaataaatcagtt
atcaaatgagaaagctgatgaaaagtatatatttgacttcatgtgagagg
tactggagtcgccttacagtatgaaccttctcctagagtaagcgttcatt
cggataggaaaatgtttcattaatgatgagaaaagtctttactcatggca
tgctcataacagtattgagtggatactatttatagaagaaaggaatgaat
tttaattcagtctgatattttcatctccgttccaaaaaagtgcacaaaaa
tgttcatccattttcatcacctccaaattcaggtctcagtgaggtagggt
tgggatctg
gaattcaattaagtaaaccaactaaataaagtactgttttctaggtatta
gggtagacaatgtagaagccatcatagtactagtcttcctaattgtcagc
ctgaagaaaggaaacttttgaaacaattatcttttaaaatgttttccttt
attattggaaatttcatacaactatataatggaatataaccatatctacc
ccatttttccttccacttacaatcatctaggctacaaatatttgctgaaa
gttataaaaattatagtttattcaaaattaaaagaatcaatatgctagaa
atgtccaatttctagatttaaaacaatttcattcaatttttaaagtttta
aaatttaaaactaagctagctattacaaataattaatacatgttagtaaa
tttcatatcccaaatccattttcattgaatcaatttccacccaagcccag
ccctcctgaatgcataggtaaggagttgcctttacccattgcacatttac
tatattttttttcctgattgtagaagttaaactagtagactgtaataaaa
aatactcatggaaaaacacataatttgctattaagatcagataaaaagca
taaaggcttccatttcaaaataaaaaagcacctttctttattcaatagtg
ttacaagtactgaaaataagttgaaaatttcaaagaattcagcttttaaa
gtaaactaatagtgttagtataatttttgcataattcattttgaagaaaa
aaatcatgactgttctcaaaagcctgtgaccaagagatgcagccttacca
acactgcttgagtgaccaagaacttgagactatatagcctaagaaccaaa
agaaatgcaataatagtgatttaaaaaggaatatgtagtaataaaatgat
tcctaatgatattttgctatactttcagaatagtgccttaatcaaaaatc
aggagagtacttcttcggcgccagtgggaccaataaagagaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27426216_27426824
seq2: B6Ng01-027E17.b_44_652 (reverse)

seq1  CAGATCCCAACCCTACCTCACTGAGACCTGAATTTGGAGGTGATGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCAACCCTACCTCACTGAGACCTGAATTTGGAGGTGATGAAAAT  50

seq1  GGATGAACATTTTTGTGCACTTTTTTGGAACGGAGATGAAAATATCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACATTTTTGTGCACTTTTTTGGAACGGAGATGAAAATATCAGAC  100

seq1  TGAATTAAAATTCATTCCTTTCTTCTATAAATAGTATCCACTCAATACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAATTCATTCCTTTCTTCTATAAATAGTATCCACTCAATACTG  150

seq1  TTATGAGCATGCCATGAGTAAAGACTTTTCTCATCATTAATGAAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCATGCCATGAGTAAAGACTTTTCTCATCATTAATGAAACATTT  200

seq1  TCCTATCCGAATGAACGCTTACTCTAGGAGAAGGTTCATACTGTAAGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCCGAATGAACGCTTACTCTAGGAGAAGGTTCATACTGTAAGGCG  250

seq1  ACTCCAGTACCTCTCACATGAAGTCAAATATATACTTTTCATCAGCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTACCTCTCACATGAAGTCAAATATATACTTTTCATCAGCTTTC  300

seq1  TCATTTGATAACTGATTTATTTGGCATTAAGGAAAAGAATAAAAAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATAACTGATTTATTTGGCATTAAGGAAAAGAATAAAAAGTAAA  350

seq1  AGGTGAAAATGCAACAGACATTTCCCATCCTTCATTTCCTGCCCCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAATGCAACAGACATTTCCCATCCTTCATTTCCTGCCCCTCTCT  400

seq1  TTCCCTTTCACCTTCTCCTTTCCTTCCCTCATTCCCTCTGTCCTTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCACCTTCTCCTTTCCTTCCCTCATTCCCTCTGTCCTTCCATT  450

seq1  TGCTCTCTGTGTCTCTTTATCTTATTTCTTCTTACTACTGTTTTCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGTGTCTCTTTATCTTATTTCTTCTTACTACTGTTTTCTTCCT  500

seq1  GCCCCAACCCCAACTTTTGCCACCTTAAGTCTTGTGAAGTACAACTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAACCCCAACTTTTGCCACCTTAAGTCTTGTGAAGTACAACTGTCT  550

seq1  GACCTCACACTTGTAATGATTCTTCAGTCTTTGTGTCAGGATCACAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACACTTGTAATGATTCTTCAGTCTTTGTGTCAGGATCACAATCA  600

seq1  AGTGAATTC  609
      |||||||||
seq2  AGTGAATTC  609

seq1: chr4_27303893_27304892
seq2: B6Ng01-027E17.g_65_1058

seq1  GAATTCAATTAAGTAAACCAACTAAATAAAGTACTGTTTTCTAGGTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAGTAAACCAACTAAATAAAGTACTGTTTTCTAGGTATTA  50

seq1  GGGTAGACAATGTAGAAGCCATCATAGTACTAGTCTTCCTAATTGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGACAATGTAGAAGCCATCATAGTACTAGTCTTCCTAATTGTCAGC  100

seq1  CTGAAGAAAGGAAACTTTTGAAACAATTATCTTTTAAAATGTTTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAAGGAAACTTTTGAAACAATTATCTTTTAAAATGTTTTCCTTT  150

seq1  ATTATTGGAAATTTCATACAACTATATAATGGAATATAACCATATCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGAAATTTCATACAACTATATAATGGAATATAACCATATCTACC  200

seq1  CCATTTTTCCTTCCACTTACAATCATCTAGGCTACAAATATTTGCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTCCTTCCACTTACAATCATCTAGGCTACAAATATTTGCTGAAA  250

seq1  GTTATAAAAATTATAGTTTATTCAAAATTAAAAGAATCAATATGCTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAAATTATAGTTTATTCAAAATTAAAAGAATCAATATGCTAGAA  300

seq1  ATGTCCAATTTCTAGATTTAAAACAATTTCATTCAATTTTTAAAGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAATTTCTAGATTTAAAACAATTTCATTCAATTTTTAAAGTTTTA  350

seq1  AAATTTAAAACTAAGCTAGCTATTACAAATAATTAATACATGTTAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAACTAAGCTAGCTATTACAAATAATTAATACATGTTAGTAAA  400

seq1  TTTCATATCCCAAATCCATTTTCATTGAATCAATTTCCACCCAAGCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATCCCAAATCCATTTTCATTGAATCAATTTCCACCCAAGCCCAG  450

seq1  CCCTCCTGAATGCATAGGTAAGGAGTTGCCTTTACCCATTGCACATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGAATGCATAGGTAAGGAGTTGCCTTTACCCATTGCACATTTAC  500

seq1  TATATTTTTTTTCCTGATTGTAGAAGTTAAACTAGTAGACTGTAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTTTTCCTGATTGTAGAAGTTAAACTAGTAGACTGTAATAAAA  550

seq1  AATACTCATGGAAAAACACATAATTTGCTATTAAGATCAGATAAAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCATGGAAAAACACATAATTTGCTATTAAGATCAGATAAAAAGCA  600

seq1  TAAAGGCTTCCATTTCAAAATAAAAAAGCACCTTTCTTTATTCAATAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTTCCATTTCAAAATAAAAAAGCACCTTTCTTTATTCAATAGTG  650

seq1  TTACAAGTACTGAAAATAAGTTGAAAATTTCAAAGAATTCAGCTTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTACTGAAAATAAGTTGAAAATTTCAAAGAATTCAGCTTTTAAA  700

seq1  GTAAACTAATAGTGTTAGTATAATTTTTGCATAATTCATTTTGAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTAATAGTGTTAGTATAATTTTTGCATAATTCATTTTGAAGAAAA  750

seq1  AAATCATGACTGTTCTCAAAAGCCTGTGACCAAGAGATGCAGCCTTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGACTGTTCTCAAAAGCCTGTGACCAAGAGATGCAGCCTTACCA  800

seq1  ACACTGCTTGAGTGACCAAGAACTTGAGACTATATAGCCTAAGAACCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTGAGTGACCAAGAACTTGAGACTATATAGCCTAAGAACCAAA  850

seq1  AGAAAATGCAAATAATAGTGATTTAAAAAGGAATATGTAGTAATAAAATG  900
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AG-AAATGC-AATAATAGTGATTTAAAAAGGAATATGTAGTAATAAAATG  898

seq1  ATTCCTAATGATATTTTGCTATACTTTCAGATTAGTGCCTTAATCAGATA  950
      ||||||||||||||||||||||||||||||| |||||||||||||| | |
seq2  ATTCCTAATGATATTTTGCTATACTTTCAGAATAGTGCCTTAATCAAAAA  948

seq1  TCAGGAGAGTAGCTTCCTCTGGCCGCAAGTGGGACCAAATAAAGAGACCC  1000
      ||||||||||| |||| ||  | ||| ||||||||| |||||||||||||
seq2  TCAGGAGAGTA-CTTCTTC--GGCGCCAGTGGGACC-AATAAAGAGACCC  994