BAC Information

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BAC

Clone NameB6Ng01-027I05
Chromosome4 (Build37)
Map Location 63,361,362 - 63,408,050
singlet/doubletdoublet
Overlap geneTnfsf15
Upstream geneRgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451
Downstream geneTnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I05.bB6Ng01-027I05.g
ACCDH858236DH858237
length340410
definitionDH858236|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I05, 5' end.DH858237|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,361,362 - 63,361,700)(63,407,636 - 63,408,050)
sequence
gaattctataatgatccctggccaggcatcctcctctactcatttgtcct
caggccaccttcactattgatcctggtagtcatggagaattatttcacaa
caacttatataacccttcttgggttttttaaaaaaataatttggttttct
gttgtttccttgaaatcacccaccactctctccgctactgatgctctata
ctacagctgaggggctagggcagcaatcgagcactggcaggggcatgggg
aggaggaaggagttttttcctcctcctagcattccactccaccctatgaa
ctgtccaagctcgtcaggttaattcaaggttgggccaagg
acctcaacagttgttagttatgaatcaagtacccattgccaagccaggag
gaacatctgcatgacttagcaccttccctcccagctttgatggcggtcca
atggaagtgacagaaagagccaagccaagtcagagcatttggtgacagag
aagatgggatgcctcgaaagcattgaggatagtatcactcccagctggag
ggaagggatgcagcaaaggaggaataggggaatggggagagaaatcagaa
gcttccccagcagagaaaacaccgtgggtgagcattagactgtagaggac
tggagaatcttcatcttgggaacatatgaaaggtgagtctgggccccggg
gaggattgacagcaggtagtttccaggccaaggttttttccgaaatactg
tgaggaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63361362_63361700
seq2: B6Ng01-027I05.b_47_386

seq1  GAATTCTATAATGATCCCTGGCCAGGCAT-TTCCTCTACTCATTTGTCCT  49
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCTATAATGATCCCTGGCCAGGCATCCTCCTCTACTCATTTGTCCT  50

seq1  CAGGCCACCTTCACTATTGATCCTGGTAGTCATGGAGAATTATTTCACAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACCTTCACTATTGATCCTGGTAGTCATGGAGAATTATTTCACAA  100

seq1  CAACTTATATAACCCTTCTTGGGTTTTTTAAAAAAATAATTTGGTTTTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATATAACCCTTCTTGGGTTTTTTAAAAAAATAATTTGGTTTTCT  150

seq1  GTTGTTTCCTTGAAATCACCCACCACTCTCTCCGCTACTGATGCTCTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCCTTGAAATCACCCACCACTCTCTCCGCTACTGATGCTCTATA  200

seq1  CTACAGCTGAGGGGCTAGGGCAGCAATCGAGCACTGGCAGGGGCATGGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTGAGGGGCTAGGGCAGCAATCGAGCACTGGCAGGGGCATGGGG  250

seq1  AGGAGGAAGGAGTTTTTTCCTCCTCCTAGCATTCCACTCCACCCTAGGAA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGAGGAAGGAGTTTTTTCCTCCTCCTAGCATTCCACTCCACCCTATGAA  300

seq1  CGGTCCAAGCTCGTCAGGTAAATTCAAGGCTGGGCCAAGG  339
      | ||||||||||||||||| ||||||||| ||||||||||
seq2  CTGTCCAAGCTCGTCAGGTTAATTCAAGGTTGGGCCAAGG  340

seq1: chr4_63407636_63408050
seq2: B6Ng01-027I05.g_67_482 (reverse)

seq1  CAGTTCCTCTCAGTATTTCGG-AAAGCCCTTGGCCTGGACACTACCTGCT  49
      ||||||||| ||||||||||| |||  |||||||||||| ||||||||||
seq2  CAGTTCCTCACAGTATTTCGGAAAAAACCTTGGCCTGGAAACTACCTGCT  50

seq1  GTCAATCCTCCCCGGGGCCCAGACTCACCTTTCCTATGTTCCCAAGATGT  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GTCAATCCTCCCCGGGGCCCAGACTCACCTTTCATATGTTCCCAAGATGA  100

seq1  AGATTCTCCAGTCCTCTACAGTCTAATGCTCACCCACGGTGTTTTCTCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCCAGTCCTCTACAGTCTAATGCTCACCCACGGTGTTTTCTCTG  150

seq1  CTGGGGAAGCTTCTGATTTCTCTCCCCATTCCCCTATTCCTCCTTTGCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGCTTCTGATTTCTCTCCCCATTCCCCTATTCCTCCTTTGCTG  200

seq1  CATCCCTTCCCTCCAGCTGGGAGTGATACTATCCTCAATGCTTTCGAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTCCCTCCAGCTGGGAGTGATACTATCCTCAATGCTTTCGAGGC  250

seq1  ATCCCATCTTCTCTGTCACCAAATGCTCTGACTTGGCTTGGCTCTTTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCTTCTCTGTCACCAAATGCTCTGACTTGGCTTGGCTCTTTCTG  300

seq1  TCACTTCCATTGGACCGCCATCAAAGCTGGGAGGGAAGGTGCTAAGTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCATTGGACCGCCATCAAAGCTGGGAGGGAAGGTGCTAAGTCAT  350

seq1  GCAGATGTTCCTCCTGGCTTGGCAATGGGTACTTGATTCATAACTAACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTTCCTCCTGGCTTGGCAATGGGTACTTGATTCATAACTAACAA  400

seq1  CTGTTGAGGTGAATTC  415
      ||||||||||||||||
seq2  CTGTTGAGGTGAATTC  416