BAC Information

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BAC

Clone NameB6Ng01-027J01
Chromosome4 (Build37)
Map Location 43,262,427 - 43,433,348
singlet/doubletdoublet
Overlap geneUnc13b, 4930417M19Rik, Rusc2
Upstream geneLOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Downstream gene4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J01.bB6Ng01-027J01.g
ACCDH858275DH858276
length793854
definitionDH858275|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J01, 5' end.DH858276|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,432,555 - 43,433,348)(43,262,427 - 43,263,281)
sequence
gaattcatttctccacagatcaagaaacttatttgtgtttgttttttgag
acagagtctcatgtagttcagagtgactttgaacttgctgcgtggctaag
actgctcctgccacagcttctaagtgctggctttgttacaagtctgagcc
accttgctacacacagatcagggaaatttaagttaagttgttgtctcaag
ttaaggtcactcagctgggaaatagcagagcacagaatgttgcccaaacc
agagtcggcttctggggccaaagttcttgaccacatcacattacacacac
agtgatgtcaggctgggtttgctgggccatctttcttactcacgtcatgg
agtcatgagggatgcgtacacaggctcatagagaagtgttcactcatgct
ccctgacatccccagttctcagaggacagcctgtcttccttgatgtgctc
aacacacctccaccactcagtccttaatcatacctagtcactaacgccct
ggggcctcgtccctgctgtgatctgcctgagatttcatcagtcccttcct
gctcagccctctcacccagtttcatttcctttttgtaaagtgtcgggaag
aattttctaacgtgtttgctgcctgttactcttcacaggatttccagaaa
aagtcgggaccaaatcctctcagtcgctgtgtctctagggtctgggcgca
tctcagaaccgaacagttaaatgaacgactctctacttctgattcagtct
agtctcctctgcctcaatcacctttatataatctgattttctt
gaattcctacacacctgttctgagccagtgagtatcaccctacttggctc
tgtctggttggggattggtctgtccatctaacagtctctctctttcctat
ctctgtatgtttgcagtgccacctcttccaactgtccgtccatctgtccc
tctgtcccttgtatctgtctgggtaactgtttctggagacaggtgtggaa
acataagggggggccctatacaggatgggatagcctccccagagagaaag
gcttctgggactgtaactgttaggggagccccaggggacccagagactgt
gtgtgcatgtgcccgtccacaatgaaaaaaagctggcctcttaaggccca
cccctgctctttctcctgcagcttatctatcctgagcctgtccttcagcc
tcaaccctcctcagggattcaatgccttgtctgtaccttctgggcattct
gtcctttgggttcatcttagctaatatggtccccctctccgtcatttatt
ctcccattagtccctgggccccttttctccagactcagtctagtcctgtt
ccctaggactcaactcctcttcattatgtcttgtgagaactaggtacctt
gggataaataaaaccaaatagctcttgcctttgatgtttaccatgttttt
ttccatctctcaggtttcctcagagttgaacgtaggaaaagtcagtgcag
aagtgatgtggcatctgtttgctcaagacatgaaatatgcactggagggt
aagggtctgccagacttcaattacctcataagctcttctttctttaccac
acaacttcatgttcttggtaaacagtataggtaagcaagtatagtgcttc
tagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43432555_43433348
seq2: B6Ng01-027J01.b_44_836 (reverse)

seq1  AAGAAAATCAGATTTATAT-AAGGTGATTTGAGGCAGAGGAGACTAGACT  49
      |||||||||||| |||||| ||||||| ||||||||||||||||||||||
seq2  AAGAAAATCAGA-TTATATAAAGGTGA-TTGAGGCAGAGGAGACTAGACT  48

seq1  GAATCAGAAGTAGAGAGTCGTTCATTTAACTGTTCGGTTCCTGAGATGCG  99
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATCAGAAGTAGAGAGTCGTTCATTTAACTGTTCGGTT-CTGAGATGCG  97

seq1  CCCAGACCCTAGAGACACAGCGACTGAGAGGATTTGGTCCCGAC-TTTTC  148
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCAGACCCTAGAGACACAGCGACTGAGAGGATTTGGTCCCGACTTTTTC  147

seq1  TGGAAATCCTGTGAAGAGTAACAGGCAGCAAACACGTTAGAAAATTCTTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCCTGTGAAGAGTAACAGGCAGCAAACACGTTAGAAAATTCTTC  197

seq1  CCGACACTTTACAAAAAGGAAATGAAACTGGGTGAGAGGGCTGAGCAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACACTTTACAAAAAGGAAATGAAACTGGGTGAGAGGGCTGAGCAGGA  247

seq1  AGGGACTGATGAAATCTCAGGCAGATCACAGCAGGGACGAGGCCCCAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGATGAAATCTCAGGCAGATCACAGCAGGGACGAGGCCCCAGGG  297

seq1  CGTTAGTGACTAGGTATGATTAAGGACTGAGTGGTGGAGGTGTGTTGAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTGACTAGGTATGATTAAGGACTGAGTGGTGGAGGTGTGTTGAGC  347

seq1  ACATCAAGGAAGACAGGCTGTCCTCTGAGAACTGGGGATGTCAGGGAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGGAAGACAGGCTGTCCTCTGAGAACTGGGGATGTCAGGGAGCA  397

seq1  TGAGTGAACACTTCTCTATGAGCCTGTGTACGCATCCCTCATGACTCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAACACTTCTCTATGAGCCTGTGTACGCATCCCTCATGACTCCAT  447

seq1  GACGTGAGTAAGAAAGATGGCCCAGCAAACCCAGCCTGACATCACTGTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGAGTAAGAAAGATGGCCCAGCAAACCCAGCCTGACATCACTGTGT  497

seq1  GTGTAATGTGATGTGGTCAAGAACTTTGGCCCCAGAAGCCGACTCTGGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGTGATGTGGTCAAGAACTTTGGCCCCAGAAGCCGACTCTGGTT  547

seq1  TGGGCAACATTCTGTGCTCTGCTATTTCCCAGCTGAGTGACCTTAACTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAACATTCTGTGCTCTGCTATTTCCCAGCTGAGTGACCTTAACTTG  597

seq1  AGACAACAACTTAACTTAAATTTCCCTGATCTGTGTGTAGCAAGGTGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAACTTAACTTAAATTTCCCTGATCTGTGTGTAGCAAGGTGGCT  647

seq1  CAGACTTGTAACAAAGCCAGCACTTAGAAGCTGTGGCAGGAGCAGTCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGTAACAAAGCCAGCACTTAGAAGCTGTGGCAGGAGCAGTCTTA  697

seq1  GCCACGCAGCAAGTTCAAAGTCACTCTGAACTACATGAGACTCTGTCTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGCAGCAAGTTCAAAGTCACTCTGAACTACATGAGACTCTGTCTCA  747

seq1  AAAAACAAACACAAATAAGTTTCTTGATCTGTGGAGAAATGAATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACACAAATAAGTTTCTTGATCTGTGGAGAAATGAATTC  793

seq1: chr4_43262427_43263281
seq2: B6Ng01-027J01.g_68_921

seq1  GAATTCCTACACACCTGTTCTGAGCCAGTGAGTATCACCCTACTTGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACACACCTGTTCTGAGCCAGTGAGTATCACCCTACTTGGCTC  50

seq1  TGTCTGGTTGGGGATTGGTCTGTCCATCTAACAGTCTCTCTCTTTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTGGGGATTGGTCTGTCCATCTAACAGTCTCTCTCTTTCCTAT  100

seq1  CTCTGTATGTTTGCAGTGCCACCTCTTCCAACTGTCCGTCCATCTGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGTTTGCAGTGCCACCTCTTCCAACTGTCCGTCCATCTGTCCC  150

seq1  TCTGTCCCTTGTATCTGTCTGGGTAACTGTTTCTGGAGACAGGTGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTGTATCTGTCTGGGTAACTGTTTCTGGAGACAGGTGTGGAA  200

seq1  ACATAAGGGGGGGCCCTATACAGGATGGGATAGCCTCCCCAGAGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGGGGGGCCCTATACAGGATGGGATAGCCTCCCCAGAGAGAAAG  250

seq1  GCTTCTGGGACTGTAACTGTTAGGGGAGCCCCAGGGGACCCAGAGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGGACTGTAACTGTTAGGGGAGCCCCAGGGGACCCAGAGACTGT  300

seq1  GTGTGCATGTGCCCGTCCACAATGAAAAAAAGCTGGCCTCTTAAGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTGCCCGTCCACAATGAAAAAAAGCTGGCCTCTTAAGGCCCA  350

seq1  CCCCTGCTCTTTCTCCTGCAGCTTATCTATCCTGAGCCTGTCCTTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCTTTCTCCTGCAGCTTATCTATCCTGAGCCTGTCCTTCAGCC  400

seq1  TCAACCCTCCTCAGGGATTCAATGCCTTGTCTGTACCTTCTGGGCATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTCCTCAGGGATTCAATGCCTTGTCTGTACCTTCTGGGCATTCT  450

seq1  GTCCTTTGGGTTCATCTTAGCTAATATGGTCCCCCTCTCCGTCATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGGTTCATCTTAGCTAATATGGTCCCCCTCTCCGTCATTTATT  500

seq1  CTCCCATTAGTCCCTGGGCCCCTTTTCTCCAGACTCAGTCTAGTCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTAGTCCCTGGGCCCCTTTTCTCCAGACTCAGTCTAGTCCTGTT  550

seq1  CCCTAGGACTCAACTCCTCTTCATTATGTCTTGTGAGAACTAGGTACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGACTCAACTCCTCTTCATTATGTCTTGTGAGAACTAGGTACCTT  600

seq1  GGGATAAATAAAACCAAATAGCTCTTGCC-TTGATGTTTACCATGTTTTT  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGATAAATAAAACCAAATAGCTCTTGCCTTTGATGTTTACCATGTTTTT  650

seq1  TTCCATCTCTCAGGTTTCCTCAGGAGTTGAACGTAGGAAAAGTCAGTGCA  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCCATCTCTCAGGTTTCCTCA-GAGTTGAACGTAGGAAAAGTCAGTGCA  699

seq1  GAAGTGATGTGGCATCTGTTTGCTCAAGACATGAAATATGCACTGGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATGTGGCATCTGTTTGCTCAAGACATGAAATATGCACTGGAGGG  749

seq1  TAAGGGTCTGCCAGACTCCATCTACCTCATAAGCTCTTTCTTTCCTTTAC  799
      ||||||||||||||||| ||  |||||||||||||| |||||| ||||||
seq2  TAAGGGTCTGCCAGACTTCAATTACCTCATAAGCTC-TTCTTT-CTTTAC  797

seq1  CACACAACTTCAAGTTCTTGGTAAACAGTATA-GTAAGCAAGTAGAGGGC  848
      |||||||||||| ||||||||||||||||||| ||||||||||| || ||
seq2  CACACAACTTCATGTTCTTGGTAAACAGTATAGGTAAGCAAGTATAGTGC  847

seq1  TTCTAGC  855
      |||||||
seq2  TTCTAGC  854