BAC Information

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BAC

Clone NameB6Ng01-027J11
Chromosome4 (Build37)
Map Location 10,801,083 - 10,962,157
singlet/doubletdoublet
Overlap gene2610301B20Rik, LOC383992, LOC100039746, Plekhf2
Upstream gene4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589
Downstream gene2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J11.bB6Ng01-027J11.g
ACCDH858295DH858296
length513931
definitionDH858295|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J11, 5' end.DH858296|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,801,083 - 10,801,600)(10,961,240 - 10,962,157)
sequence
ttcaaagcacaatgttcgaatgtgcttaagctttttcactccgatccaag
ccagcttgagtgcggcataagtttccaatgcagagtctacatagaatctt
cctgccaaaattagcatcaccagtagtcgtggccgagtggttaaggcgat
ggactagaaatccattggggtctccccgcgcaggttcgaatcctgccgac
tacggaagggaatgttttttgccaccgaatgaataattttggatctgcag
attccccgatgaaacatacagcctgccaaagcgaccaggggtcgccacgg
ggtggaaagagaggctgttggggtggaaagagagactgtttgtgatcagg
cgccggagcggagcgggagaggtgaagggcaaagcgggcccacaggctgt
ttttacggcaagggaagcgctccgggcacgcaggacccaccgacaacatc
cgcggcggccggcctcagcgggtccccgggcctcggggaccccctgccac
cgcgagtgcgcgc
gaattccaaagaaactggaatttgaaaggaaatgtttatagttaatgttt
aatttaaaaaatgtctattgttaaaccaaacatggtgacacatgcctata
accccatcacttgagttctgcctggagttcagggctagtttgaactacac
aataaatccctgtctaaacaaacaaacagataaataaataaataaataaa
taaataaataaataaataaataaatattctattgtagggaaatgcacaaa
gaaaattgactgttttcccactatcctgaaatgacaactctttgcacttt
gttatatatgtctttcacatgtttttaagttgaagttttaagttcttctg
acactgattaaatatttgcaactgaaaataagtctgtattaaccacttta
agtgtatggagaggaacaatatagacattcacatggtgcagacactacta
cctgaatgctttgtattttacaagactagaatttacatggtgcctgtctt
taaccctggccctctggaggcagagacaggggaacccagggttgaaagcc
agtctgcaacatgataggttagcctgggctaatagtgagaccttggactg
atctgtctcctatagggatatatactaggccactatcagtgacagtgacc
aaaagttcttctgggctttccagtggctgacagagatggttactgtcatc
tttgctggactctataattcctattttgccctgacctctattgtctggct
cagactgctggtagttcatgtaaggggccaatgatagagtattttattga
tataacctctgtcccgaacctctaacacacagacataaaaacacacacag
acacacacatagacagacacacatagatatatattgacatatcaaacaca
ccaccctacgcacacatatcccccacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10801083_10801600
seq2: B6Ng01-027J11.b_43_561

seq1  GAATTCTTCAAAGCACAATGTTCGAATGTGCTTAAGCTTTTTCACTCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAGCACAATGTTCGAATGTGCTTAAGCTTTTTCACTCCGA  50

seq1  TCCAAGCCAGCTTGAGTGCGGCATAAGTTTCCAATGCAGAGTCTACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCAGCTTGAGTGCGGCATAAGTTTCCAATGCAGAGTCTACATAG  100

seq1  AATCTTCCTGCCAAAATTAGCATCACCAGTAGTCGTGGCCGAGTGGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCTGCCAAAATTAGCATCACCAGTAGTCGTGGCCGAGTGGTTAA  150

seq1  GGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCT  200

seq1  GCCGACTACGGAAGGGAATGTTTTTTGCCACCGAATGAATAATTTTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTACGGAAGGGAATGTTTTTTGCCACCGAATGAATAATTTTGGAT  250

seq1  CTGCAGATTCCCCGATGAAACATACAGCCTGCCAAAGCGACCAGGGGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATTCCCCGATGAAACATACAGCCTGCCAAAGCGACCAGGGGTCG  300

seq1  CCACGGGGTGGAAAGAGAGGCTGTTGGGGTGGAAAGAGAGACTGTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGGTGGAAAGAGAGGCTGTTGGGGTGGAAAGAGAGACTGTTTGTG  350

seq1  ATCAGGCGCCGGAGCGGAGCGGGAGAGGTGAAGGGCAAAGCGGGCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCGCCGGAGCGGAGCGGGAGAGGTGAAGGGCAAAGCGGGCCCACA  400

seq1  GGCTGCGTGGACGGCAAGGGAAGCGCTCCGGGCACGCAGGACCCACCGAC  450
      |||||  |  ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTTACGGCAAGGGAAGCGCTCCGGGCACGCAGGACCCACCGAC  450

seq1  AACATCCGCGGCGGCCGGCCTCAGCGGGTCCCCGGGCCTC-GGGACCCCC  499
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACATCCGCGGCGGCCGGCCTCAGCGGGTCCCCGGGCCTCGGGGACCCCC  500

seq1  TGCCACCGCGAGTGCGCGC  518
      |||||||||||||||||||
seq2  TGCCACCGCGAGTGCGCGC  519

seq1: chr4_10961240_10962157
seq2: B6Ng01-027J11.g_69_999 (reverse)

seq1  TGTGTGTG-----TATGTGTG--------TGTGTGTTTGTGTATGTCTAT  37
      ||||||||     ||||||||         |||||||||  |||||| ||
seq2  TGTGTGTGGGGGATATGTGTGCGTAGGGTGGTGTGTTTG-ATATGTCAAT  49

seq1  ATATATCTATGTGTGTCTGTCTATGTGTGTGTCTGTGTGTGTTTTTATGT  87
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTATGTGTGTCTGTCTATGTGTGTGTCTGTGTGTGTTTTTATGT  99

seq1  CTGTGTGTTAGAGGTTCGGGACAGAGGTTATATCAATAAAATACTCTATC  137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTAGAGGTTCGGGACAGAGGTTATATCAATAAAATACTCTATC  149

seq1  ATTGGCCCCTTACATGAACTACCAGCAGTCTGAGCCAGACAATAGAGGTC  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCCCTTACATGAACTACCAGCAGTCTGAGCCAGACAATAGAGGTC  199

seq1  AGGGC-AAATAGGAATTATAGAGTCCAGCAAAGATGACAGTAACCATCTC  236
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAATAGGAATTATAGAGTCCAGCAAAGATGACAGTAACCATCTC  249

seq1  TGTCAGCCACTGGAAAGCCCAGAAGAACTTTTGGTCACTGTCACTGATAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCACTGGAAAGCCCAGAAGAACTTTTGGTCACTGTCACTGATAG  299

seq1  TGGCCTAGTATATATCCCTATAGGAGACAGATCAGTCCAAGGTCTCACTA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGTATATATCCCTATAGGAGACAGATCAGTCCAAGGTCTCACTA  349

seq1  TTAGCCCAGGCTAACCTATCATGTTGCAGACTGGCTTTCAACCCTGGGTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCAGGCTAACCTATCATGTTGCAGACTGGCTTTCAACCCTGGGTT  399

seq1  CCCCTGTCTCTGCCTCCAGAGGGCCAGGGTTAAAGACAGGCACCATGTAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCTCTGCCTCCAGAGGGCCAGGGTTAAAGACAGGCACCATGTAA  449

seq1  ATTCTAGTCTTGTAAAATACAAAGCATTCAGGTAGTAGTGTCTGCACCAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTCTTGTAAAATACAAAGCATTCAGGTAGTAGTGTCTGCACCAT  499

seq1  GTGAATGTCTATATTGTTCCTCTCCATACACTTAAAGTGGTTAATACAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTCTATATTGTTCCTCTCCATACACTTAAAGTGGTTAATACAGA  549

seq1  CTTATTTTCAGTTGCAAATATTTAATCAGTGTCAGAAGAACTTAAAACTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCAGTTGCAAATATTTAATCAGTGTCAGAAGAACTTAAAACTT  599

seq1  CAACTTAAAAACATGTGAAAGACATATATAACAAAGTGCAAAGAGTTGTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAAAAACATGTGAAAGACATATATAACAAAGTGCAAAGAGTTGTC  649

seq1  ATTTCAGGATAGTGGGAAAACAGTCAATTTTCTTTGTGCATTTCCCTACA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGATAGTGGGAAAACAGTCAATTTTCTTTGTGCATTTCCCTACA  699

seq1  ATAGAATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT  749

seq1  TATCTGTTTGTTTGTTTAGACAGGGATTTATTGTGTAGTTCAAACTAGCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTGTTTGTTTAGACAGGGATTTATTGTGTAGTTCAAACTAGCC  799

seq1  CTGAACTCCAGGCAGAACTCAAGTGATGGGGTTATAGGCATGTGTCACCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCCAGGCAGAACTCAAGTGATGGGGTTATAGGCATGTGTCACCA  849

seq1  TGTTTGGTTTAACAATAGACATTTTTTAAATTAAACATTAACTATAAACA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTTAACAATAGACATTTTTTAAATTAAACATTAACTATAAACA  899

seq1  TTTCCTTTCAAATTCCAGTTTCTTTGGAATTC  918
      ||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCAAATTCCAGTTTCTTTGGAATTC  931