BAC Information

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BAC

Clone NameB6Ng01-027M02
Chromosome4 (Build37)
Map Location 123,354,749 - 123,459,665
singlet/doubletdoublet
Overlap geneMacf1, LOC100039110, Ndufs5, 6330407G11Rik
Upstream gene9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneRhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027M02.bB6Ng01-027M02.g
ACCDH858416DH858417
length635978
definitionDH858416|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M02, 5' end.DH858417|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,354,749 - 123,355,383)(123,458,670 - 123,459,665)
sequence
gaattcttccttagggtcccacttcctacccctatagccttcaattccat
ctgtggcttggatagaataaatcacttccatctgctctctgacaaggcct
tggaatgaacaaaagaaagcaacagaagcggcaagctcaggcgcattcct
tgctggcctaggaaagcactggcctcctgcagccttccctgcctcttttg
gtcggtatccaagtaataggaaggacagcactaagtgtagttacaggtat
ggaaacctcattcagtgatccctggaagcaggtatccatggtcacccttt
tacagatgaatctatgaaagcaccgcagggtagttatccggctggacgtc
ctgactctgaataaaattgtcactgtagctcctggtacatagctgcagtc
cagtctctctctctctctcttttttttttttttttttttttttttggttt
ttcgaaacggtttctctgtaaagccctggctgtcctggaactcactctgt
agaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaag
tgctgggattaaagggatgggccaccaccgcccgggcagtccagtctttt
tatggcaggtgagtgggtggatggatggaaggatg
gaattcttactccagagccttgttcaagcctcagcatcataggagtcgag
aattccagcacagttaacatctgtgaaggctacctagagagataacagtc
cttcttatagtcatttcaaataagaactaaccgtgcttaagggtcaagca
tgtctaaagactcaagcatgtacgccctttctcctctcgctgtatggctt
tttcctccctgtatagcctttctcccagtagtctttctccctttccagat
gtcaacttacaatttttgaggaatttcgaaaacaagcccatacaattcaa
ggcgtgccttaaccacctgtgcaagcgttgagctatgtggtgtgacctta
tcagacgctaatcttatccaaggcaccttagtacccatcccaagatctca
ttcaccgaaagcaagggggaagagaagccccttagtgcctctctgggcaa
aatagtttcaggagcacacaccctatcagcagctatggaagttctgtggg
tacctggaggcaagggatctgaaaactataccacggacagtggttgtttc
gtcagcctagtacacagaggtcctggctatctgaccctgcaaccagcctt
tgttagaatttcatgctgaacaggctacttcctggtagagaatcagctgt
gtaatttcagaggggcatctaccccacagccaatgcacacacaagatagg
gagccggggcagtggtggcacatgactttaatcccagcacttggaagcca
gaggcaggtggatttctgattctacagagtgagttccaggaccgccaggg
ctacacagagaaaccctgtctcgaaaaacaaaacaagacagggagccttt
agggaggaatgctgagttctatttatctctccacactggtcagaactgga
ctggcactgattggaatttcttctttctgttttccttccttcgtttgttt
gtttggggttttgggggcggggggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123354749_123355383
seq2: B6Ng01-027M02.b_41_675

seq1  GAATTCTTCCTTAGGGTCCCACTTCCTACCCCTATAGCCTTCAATTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTAGGGTCCCACTTCCTACCCCTATAGCCTTCAATTCCAT  50

seq1  CTGTGGCTTGGATAGAATAAATCACTTCCATCTGCTCTCTGACAAGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTGGATAGAATAAATCACTTCCATCTGCTCTCTGACAAGGCCT  100

seq1  TGGAATGAACAAAAGAAAGCAACAGAAGCGGCAAGCTCAGGCGCATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAACAAAAGAAAGCAACAGAAGCGGCAAGCTCAGGCGCATTCCT  150

seq1  TGCTGGCCTAGGAAAGCACTGGCCTCCTGCAGCCTTCCCTGCCTCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCTAGGAAAGCACTGGCCTCCTGCAGCCTTCCCTGCCTCTTTTG  200

seq1  GTCGGTATCCAAGTAATAGGAAGGACAGCACTAAGTGTAGTTACAGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTATCCAAGTAATAGGAAGGACAGCACTAAGTGTAGTTACAGGTAT  250

seq1  GGAAACCTCATTCAGTGATCCCTGGAAGCAGGTATCCATGGTCACCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTCATTCAGTGATCCCTGGAAGCAGGTATCCATGGTCACCCTTT  300

seq1  TACAGATGAATCTATGAAAGCACCGCAGGGTAGTTATCCGGCTGGACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGAATCTATGAAAGCACCGCAGGGTAGTTATCCGGCTGGACGTC  350

seq1  CTGACTCTGAATAAAATTGTCACTGTAGCTCCTGGTACATAGCTGCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGAATAAAATTGTCACTGTAGCTCCTGGTACATAGCTGCAGTC  400

seq1  CAGTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT  450

seq1  TTCGAAACGGTTTCTCTGTAAAGCCCTGGCTGTCCTGGAACTCACTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAACGGTTTCTCTGTAAAGCCCTGGCTGTCCTGGAACTCACTCTGT  500

seq1  AGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  550

seq1  TGCTGGGATTAAAGGCATGGGCCACCACCGCCCGGCCAGTCCAGTCTTTT  600
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TGCTGGGATTAAAGGGATGGGCCACCACCGCCCGGGCAGTCCAGTCTTTT  600

seq1  TATGGCAGGTGAGTGGGTGGATGGATGGATGGATG  635
      ||||||||||||||||||||||||||||| |||||
seq2  TATGGCAGGTGAGTGGGTGGATGGATGGAAGGATG  635

seq1: chr4_123458670_123459665
seq2: B6Ng01-027M02.g_68_1045 (reverse)

seq1  CAAACCCCCCTGCCCCCCAAAAACCCCAAAAAACAAAAACAAAACGAAAG  50
      |||||||||| ||||||  ||||||||   |||||||    ||||| |||
seq2  CAAACCCCCC-GCCCCC--AAAACCCC---AAACAAA---CAAACG-AAG  40

seq1  GAAAGGAAAAACAGAAAGAAAGAAAATTCCAATTCAGTGACAAGTCCAGT  100
      |||  | |||||||||||||   ||||||||| |||||| | ||||||||
seq2  GAA--GGAAAACAGAAAGAA--GAAATTCCAA-TCAGTG-CCAGTCCAGT  84

seq1  TCTGACCAGTGTGGAGAGATAAATAGAACTCAGCATTTCCTCCCTAAGGG  150
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TCTGACCAGTGTGGAGAGATAAATAGAACTCAGCA-TTCCTCCCTAAAGG  133

seq1  CTCCCTGTCTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTCTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTG  183

seq1  GCGGTCCTGGAACTCACTCTGTAGAATTCAGAAATCCACCTGCCTCTGGC  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCGGTCCTGGAACTCACTCTGTAGAA-TCAGAAATCCACCTGCCTCTGGC  232

seq1  TTCCAAGTGCTGGGATTAAAGTCATGTGCCACCACTGCCCCGGCTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGCTGGGATTAAAGTCATGTGCCACCACTGCCCCGGCTCCCTA  282

seq1  TCTTGTGTGTGCATTGGCTGTGGGGTAGATGCCCCTCTGAAATTACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGTGCATTGGCTGTGGGGTAGATGCCCCTCTGAAATTACACAG  332

seq1  CTGATTCTCTACCAGGAAGTAGCCTGTTCAGCATGAAATTCTAACAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTCTACCAGGAAGTAGCCTGTTCAGCATGAAATTCTAACAAAGG  382

seq1  CTGGTTGCAGGGTCAGATAGCCAGGACCTCTGTGTACTAGGCTGACGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCAGGGTCAGATAGCCAGGACCTCTGTGTACTAGGCTGACGAAA  432

seq1  CAACCACTGTCCGTGGTATAGTTTTCAGATCCCTTGCCTCCAGGTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACTGTCCGTGGTATAGTTTTCAGATCCCTTGCCTCCAGGTACCCA  482

seq1  CAGAACTTCCATAGCTGCTGATAGGGTGTGTGCTCCTGAAACTATTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTCCATAGCTGCTGATAGGGTGTGTGCTCCTGAAACTATTTTGC  532

seq1  CCAGAGAGGCACTAAGGGGCTTCTCTTCCCCCTTGCTTTCGGTGAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGGCACTAAGGGGCTTCTCTTCCCCCTTGCTTTCGGTGAATGAG  582

seq1  ATCTTGGGATGGGTACTAAGGTGCCTTGGATAAGATTAGCGTCTGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGATGGGTACTAAGGTGCCTTGGATAAGATTAGCGTCTGATAAG  632

seq1  GTCACACCACATAGCTCAACGCTTGCACAGGTGGTTAAGGCACGCCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACCACATAGCTCAACGCTTGCACAGGTGGTTAAGGCACGCCTTGA  682

seq1  ATTGTATGGGCTTGTTTTCGAAATTCCTCAAAAATTGTAAGTTGACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGGGCTTGTTTTCGAAATTCCTCAAAAATTGTAAGTTGACATCT  732

seq1  GGAAAGGGAGAAAGACTACTGGGAGAAAGGCTATACAGGGAGGAAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAGAAAGACTACTGGGAGAAAGGCTATACAGGGAGGAAAAAGC  782

seq1  CATACAGCGAGAGGAGAAAGGGCGTACATGCTTGAGTCTTTAGACATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGCGAGAGGAGAAAGGGCGTACATGCTTGAGTCTTTAGACATGCT  832

seq1  TGACCCTTAAGCACGGTTAGTTCTTATTTGAAATGACTATAAGAAGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTAAGCACGGTTAGTTCTTATTTGAAATGACTATAAGAAGGACT  882

seq1  GTTATCTCTCTAGGTAGCCTTCACAGATGTTAACTGTGCTGGAATTCTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCTCTAGGTAGCCTTCACAGATGTTAACTGTGCTGGAATTCTCG  932

seq1  ACTCCTATGATGCTGAGGCTTGAACAAGGCTCTGGAGTAAGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATGATGCTGAGGCTTGAACAAGGCTCTGGAGTAAGAATTC  978