BAC Information

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BAC

Clone NameB6Ng01-027P09
Chromosome4 (Build37)
Map Location 94,876,434 - 95,019,238
singlet/doubletdoublet
Overlap geneLOC100042411
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027P09.bB6Ng01-027P09.g
ACCDH858566DH858567
length974429
definitionDH858566|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P09, 5' end.DH858567|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,018,255 - 95,019,238)(94,876,434 - 94,876,868)
sequence
gaattcctcctctccaaggctatggggacatgaatgcccttctgtaaggt
gagccagaaaacaaaggagggtcacccttgctcttctcgtgtcttgtttc
agaactgtcccctacacctgggaggaaggtgcatggatgcctcctttccc
ctgcctattagcaccctttttgtccagtcacatttctccaaagcagtctt
ctcacccaactaaagcataaaaatggacagcatggaactggactcatggt
tcagtgattaaaacctctcgttgttcttccccaccacccaagttcagttc
ccagtatacacaatgactggctgtctcagttatctgtaacttcagctcca
ggggacctgatgcccatgtcctcttctggcctccacaggcccaaccccca
tcatccacatatatactatacacacacataaataaataataaaataaatc
tttaaaaacaaatacatttcctggactttcgtttttaatacctgaaggtt
cttgtgttatataaagcttggaaaatattacatctgttttgcttttctct
tgctctcctggcttctgccatccttatgaggagccatgtcacagctgttc
tgcctctaccatctttattagcaaatcaagattctgggatggtggtggtt
ccacaaggttatactgttgtaataagcctctctggggttcctcactccag
cctcattttcaaatacatgtttttgggctatcctaccctctgactgaaaa
gccttccctgattggttttatcatccaatgaaaccaagatgtggttgaat
gtgggtgatgttcaccaggaaaggactcaagtctccagtggatgactagc
agtctacaaataaacaaagattgtttctgttttcttcctcagacattaat
gattcttttacacctcatatccagtctgtctcatcgcttgataaactcat
gacagattacttggggaggaaccg
catacaaatgcaagggttttttttttcttccttatacagcaataatttca
actcacagttggttgaatccatgggtgtggaccaaagggatgccgagggg
ctgacaacacaccagtcttcttttctttatacttgaataggtttctgtag
aaacccaactaaagcctcaagaattctatgggcctcaccaggatagctga
aagctttcttctttcctgaggaaggctgcattggggtgggggcccagcct
tgttttcagtggccacactggaaagcactaaaaggaaaaaggctctggag
attcagacaactttttcagtccaagaaagaattctggagtagtgacagct
ccatcatgggtgcctgcaaacctaggcaaaggggaagtcatggtggaggc
atgggtgggatagaatggagatggttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_95018255_95019238
seq2: B6Ng01-027P09.b_43_1013 (reverse)

seq1  TTCCTTCCCAAGTTAATTCTGGTCATGAGGTTTATCATAGCGATGGAGAA  50
      ||||| |||||||  | ||| ||||||| |||||||| |||||| ||| |
seq2  TTCCTCCCCAAGT--AATCT-GTCATGA-GTTTATCA-AGCGAT-GAG-A  43

seq1  CAGACTGGGATATGAGGTGTAAAAGAATCATTAATGTTCTGAGGAAGAAA  100
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGACT-GGATATGAGGTGTAAAAGAATCATTAATG-TCTGAGGAAGAAA  91

seq1  ACAGAAACAATCCTTTTGTTTATTTTGTAGACTGCTTGTCATCCACTGGA  150
      ||||||||||||  |||||||| ||||||||||||| |||||||||||||
seq2  ACAGAAACAATC--TTTGTTTA-TTTGTAGACTGCTAGTCATCCACTGGA  138

seq1  GACTTGAGTCCTTTCCCTGGTGAACATCACCCACATTCAACCACATCTTG  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACTTGAGTCCTTT-CCTGGTGAACATCACCCACATTCAACCACATCTTG  187

seq1  GTTTCATTGGATGATAAAACCAATCAGGGAAGGCTTTTCAGTCAGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGGATGATAAAACCAATCAGGGAAGGCTTTTCAGTCAGAGGGT  237

seq1  AGGATAGCCCAAAAACATGTATTTGAAAATGAGGCTGGAGTGAGGAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCCCAAAAACATGTATTTGAAAATGAGGCTGGAGTGAGGAACCC  287

seq1  CAGAGAGGCTTATTACAACAGTATAACCTTGTGGAACCACCACCATCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGCTTATTACAACAGTATAACCTTGTGGAACCACCACCATCCCA  337

seq1  GAATCTTGATTTGCTAATAAAGATGGTAGAGGCAGAACAGCTGTGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGATTTGCTAATAAAGATGGTAGAGGCAGAACAGCTGTGACATG  387

seq1  GCTCCTCATAAGGATGGCAGAAGCCAGGAGAGCAAGAGAAAAGCAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCATAAGGATGGCAGAAGCCAGGAGAGCAAGAGAAAAGCAAAACA  437

seq1  GATGTAATATTTTCCAAGCTTTATATAACACAAGAACCTTCAGGTATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATATTTTCCAAGCTTTATATAACACAAGAACCTTCAGGTATTAA  487

seq1  AAACGAAAGTCCAGGAAATGTATTTGTTTTTAAAGATTTATTTTATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAAGTCCAGGAAATGTATTTGTTTTTAAAGATTTATTTTATTATT  537

seq1  TATTTATGTGTGTGTATAGTATATATGTGGATGATGGGGGTTGGGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTGTGTGTATAGTATATATGTGGATGATGGGGGTTGGGCCTGT  587

seq1  GGAGGCCAGAAGAGGACATGGGCATCAGGTCCCCTGGAGCTGAAGTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGAAGAGGACATGGGCATCAGGTCCCCTGGAGCTGAAGTTACA  637

seq1  GATAACTGAGACAGCCAGTCATTGTGTATACTGGGAACTGAACTTGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGAGACAGCCAGTCATTGTGTATACTGGGAACTGAACTTGGGTG  687

seq1  GTGGGGAAGAACAACGAGAGGTTTTAATCACTGAACCATGAGTCCAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAGAACAACGAGAGGTTTTAATCACTGAACCATGAGTCCAGTTC  737

seq1  CATGCTGTCCATTTTTATGCTTTAGTTGGGTGAGAAGACTGCTTTGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTCCATTTTTATGCTTTAGTTGGGTGAGAAGACTGCTTTGGAGA  787

seq1  AATGTGACTGGACAAAAAGGGTGCTAATAGGCAGGGGAAAGGAGGCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACTGGACAAAAAGGGTGCTAATAGGCAGGGGAAAGGAGGCATCC  837

seq1  ATGCACCTTCCTCCCAGGTGTAGGGGACAGTTCTGAAACAAGACACGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTTCCTCCCAGGTGTAGGGGACAGTTCTGAAACAAGACACGAGA  887

seq1  AGAGCAAGGGTGACCCTCCTTTGTTTTCTGGCTCACCTTACAGAAGGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGGGTGACCCTCCTTTGTTTTCTGGCTCACCTTACAGAAGGGCA  937

seq1  TTCATGTCCCCATAGCCTTGGAGAGGAGGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCCCATAGCCTTGGAGAGGAGGAATTC  971

seq1: chr4_94876434_94876868
seq2: B6Ng01-027P09.g_71_505

seq1  GAATTCCATACAAATGCAAGGGTTTTTTTTTTCTTCCTTATACAGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAAATGCAAGGGTTTTTTTTTTCTTCCTTATACAGCAATA  50

seq1  ATTTCAACTCACAGTTGGTTGAATCCATGGGTGTGGACCAAAGGGATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACTCACAGTTGGTTGAATCCATGGGTGTGGACCAAAGGGATGCC  100

seq1  GAGGGGCTGACAACACACCAGTCTTCTTTTCTTTATACTTGAATAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTGACAACACACCAGTCTTCTTTTCTTTATACTTGAATAGGTTT  150

seq1  CTGTAGAAACCCAACTAAAGCCTCAAGAATTCTATGGGCCTCACCAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAACCCAACTAAAGCCTCAAGAATTCTATGGGCCTCACCAGGAT  200

seq1  AGCTGAAAGCTTTCTTCTTTCCTGAGGAAGGCTGCATTGGGGTGGGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGCTTTCTTCTTTCCTGAGGAAGGCTGCATTGGGGTGGGGGCC  250

seq1  CAGCCTTGTTTTCAGTGGCCACACTGGAAAGCACTAAAAGGAAAAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGTTTTCAGTGGCCACACTGGAAAGCACTAAAAGGAAAAAGGCT  300

seq1  CTGGAGATTCAGACAACTTTTTCAGTCCAAGAAAGAATTCTGGAGTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATTCAGACAACTTTTTCAGTCCAAGAAAGAATTCTGGAGTAGTG  350

seq1  ACAGCTCCATCATGGGTGCCTGCAAACCTAGGCAAAGGGGAAGTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCATCATGGGTGCCTGCAAACCTAGGCAAAGGGGAAGTCATGGT  400

seq1  GGAGGCATGGGTGGGATAGAATGGAGATGGTTCAG  435
      |||||||||||||||||||||||||||||||||||
seq2  GGAGGCATGGGTGGGATAGAATGGAGATGGTTCAG  435