BAC Information

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BAC

Clone NameB6Ng01-029B06
Chromosome4 (Build37)
Map Location 70,082,976 - 70,238,266
singlet/doubletdoublet
Overlap geneMegf9
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2
Downstream geneLOC100039565, LOC100039979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029B06.bB6Ng01-029B06.g
ACCDH859379DH859380
length788944
definitionDH859379|Mus musculus domesticus DNA, BAC clone: B6Ng01-029B06, 5' end.DH859380|Mus musculus domesticus DNA, BAC clone: B6Ng01-029B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,082,976 - 70,083,666)(70,237,716 - 70,238,266)
sequence
gaattcacctgagtacaaggcttgtttactagttaggcacagcggaggcc
cgcgccatcttataatggcgattgctcgcagcacttaccagctctccaca
gtagacaatgggcttcttaggattaccaaagggtgttccttttgcctttc
caaagccagagacaaaacccaaattttttaaacagaagatgatgtcaggg
gttggcctggtgctgctatgtattcaaatgttaaaatactggcccgaaag
atctattcgtgcctatgagcagatcctcctgtacaccgagtgattttatg
taaactttgctccccaatttaaaacaattggataaataaaattatagcgg
taaactgttaaaagtccattctatgctcctggtgggtgcatgtgcctcct
ctgcatccctcctcccaagacccctggattcactaatgaaagacatgcac
atgcaacctttatcttttaatatgccttaactaggtcaatgactgggcac
ttccaaacctctccaaggctagcacactcatctttgatatccctgagtta
attctttctaaatttatattttgtctttgatgtcctggtttcttctgggc
agccctcccatggggccgctatccttttgcacctatatttctcctgctcc
ttcatggtaggtggcaagcaagcaagcaggcatgcatgctgttacagaag
tagttgagagataacatttgattggcaatgtaggggggagagagagagag
agagagagagagagagagagagagtgagagagagaaag
gaattcaggtatgctgaggccaaagttgttaccttggactgtgtcttagg
gtgtgatgaaattacatgaccaaaaagcaagctggggaagaaagggttca
tgtggtttatacttccataatgcggttcatcatcaaaaaagtcaggacca
caactcaagcaggctagagacctgaaaaccatagaggaatgttgcttgct
gccttgttctatatggcttggtcagcctgctttcttattaaaaaaaacaa
aacaaaacaaaacaaaacatttaaggcatttaaatttaaggcatttaact
taacaaaacatttaagaaaaatgccttacaatcagatcttatgtggggca
atttctcagttgaggttccctcctttcagataactcatcttgtgtcaacc
tgacacaagattagccagcacagactggctggtgggggcccaatccctca
gtcaagggatttcaacacaaagggctgagcttctggcatttcctgagcac
tttgctggtaaaaggacaaaagctatcagtgaattcatgggcagttggta
tgcatttgctattgcctatggccatagggctttctttatatagagaaggg
actcctcacctcagtcagaaaagaaataaaaaacaaaacaaaacaaatat
atatatggccctactagagaccatacatatgccaaaagaggtagccactg
ttcactgcaaaaggcatcaaaaggagacccacagaggcccaagagaaaag
ggcaacagacttggccacctggaaggcagcactagaaccaatcagcctct
gattatcctgactgaacctggattgctcaagaacccaacctatacacaag
aaaacaagtaggcaaaggagggtgccaccaaagacatggatagtagttct
tgtcagataaacatttgactcactgccattatcatagatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_70082976_70083666
seq2: B6Ng01-029B06.b_44_734

seq1  GAATTCACCTGAGTACAAGGCTTGTTTACTAGTTAGGCACAGCGGAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGAGTACAAGGCTTGTTTACTAGTTAGGCACAGCGGAGGCC  50

seq1  CGCGCCATCTTATAATGGCGATTGCTCGCAGCACTTACCAGCTCTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCATCTTATAATGGCGATTGCTCGCAGCACTTACCAGCTCTCCACA  100

seq1  GTAGACAATGGGCTTCTTAGGATTACCAAAGGGTGTTCCTTTTGCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAATGGGCTTCTTAGGATTACCAAAGGGTGTTCCTTTTGCCTTTC  150

seq1  CAAAGCCAGAGACAAAACCCAAATTTTTTAAACAGAAGATGATGTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAGAGACAAAACCCAAATTTTTTAAACAGAAGATGATGTCAGGG  200

seq1  GTTGGCCTGGTGCTGCTATGTATTCAAATGTTAAAATACTGGCCCGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTGGTGCTGCTATGTATTCAAATGTTAAAATACTGGCCCGAAAG  250

seq1  ATCTATTCGTGCCTATGAGCAGATCCTCCTGTACACCGAGTGATTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCGTGCCTATGAGCAGATCCTCCTGTACACCGAGTGATTTTATG  300

seq1  TAAACTTTGCTCCCCAATTTAAAACAATTGGATAAATAAAATTATAGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGCTCCCCAATTTAAAACAATTGGATAAATAAAATTATAGCGG  350

seq1  TAAACTGTTAAAAGTCCATTCTATGCTCCTGGTGGGTGCATGTGCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTTAAAAGTCCATTCTATGCTCCTGGTGGGTGCATGTGCCTCCT  400

seq1  CTGCATCCCTCCTCCCAAGACCCCTGGATTCACTAATGAAAGACATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCCTCCTCCCAAGACCCCTGGATTCACTAATGAAAGACATGCAC  450

seq1  ATGCAACCTTTATCTTTTAATATGCCTTAACTAGGTCAATGACTGGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACCTTTATCTTTTAATATGCCTTAACTAGGTCAATGACTGGGCAC  500

seq1  TTCCAAACCTCTCCAAGGCTAGCACACTCATCTTTGATATCCCTGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACCTCTCCAAGGCTAGCACACTCATCTTTGATATCCCTGAGTTA  550

seq1  ATTCTTTCTAAATTTATATTTTGTCTTTGATGTCCTGGTTTCTTCTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTAAATTTATATTTTGTCTTTGATGTCCTGGTTTCTTCTGGGC  600

seq1  AGCCCTCCCATGGGGCCGCTATCCTTTTGCACCTATATTTCTCCTGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCCATGGGGCCGCTATCCTTTTGCACCTATATTTCTCCTGCTCC  650

seq1  TTCATGGTAGGTGGCAAGCAAGCAAGCAGGCATGCATGCTG  691
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTAGGTGGCAAGCAAGCAAGCAGGCATGCATGCTG  691

seq1: chr4_70237716_70238266
seq2: B6Ng01-029B06.g_70_620 (reverse)

seq1  ATACCAACTGCCCATGAATTCACTGATAGCTTTTGTCCTTTTACCAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAACTGCCCATGAATTCACTGATAGCTTTTGTCCTTTTACCAGCAA  50

seq1  AGTGCTCAGGAAATGCCAGAAGCTCAGCCCTTTGTGTTGAAATCCCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGGAAATGCCAGAAGCTCAGCCCTTTGTGTTGAAATCCCTTGA  100

seq1  CTGAGGGATTGGGCCCCCACCAGCCAGTCTGTGCTGGCTAATCTTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGATTGGGCCCCCACCAGCCAGTCTGTGCTGGCTAATCTTGTGTC  150

seq1  AGGTTGACACAAGATGAGTTATCTGAAAGGAGGGAACCTCAACTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACACAAGATGAGTTATCTGAAAGGAGGGAACCTCAACTGAGAAA  200

seq1  TTGCCCCACATAAGATCTGATTGTAAGGCATTTTTCTTAAATGTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCACATAAGATCTGATTGTAAGGCATTTTTCTTAAATGTTTTGTT  250

seq1  AAGTTAAATGCCTTAAATTTAAATGCCTTAAATGTTTTGTTTTGTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATGCCTTAAATTTAAATGCCTTAAATGTTTTGTTTTGTTTTGT  300

seq1  TTTGTTTTTTTTAATAAGAAAGCAGGCTGACCAAGCCATATAGAACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTAATAAGAAAGCAGGCTGACCAAGCCATATAGAACAAGG  350

seq1  CAGCAAGCAACATTCCTCTATGGTTTTCAGGTCTCTAGCCTGCTTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCAACATTCCTCTATGGTTTTCAGGTCTCTAGCCTGCTTGAGTT  400

seq1  GTGGTCCTGACTTTTTTGATGATGAACCGCATTATGGAAGTATAAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTGACTTTTTTGATGATGAACCGCATTATGGAAGTATAAACCAC  450

seq1  ATGAACCCTTTCTTCCCCAGCTTGCTTTTTGGTCATGTAATTTCATCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCTTTCTTCCCCAGCTTGCTTTTTGGTCATGTAATTTCATCACA  500

seq1  CCCTAAGACACAGTCCAAGGTAACAACTTTGGCCTCAGCATACCTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGACACAGTCCAAGGTAACAACTTTGGCCTCAGCATACCTGAATT  550

seq1  C  551
      |
seq2  C  551