BAC Information

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BAC

Clone NameB6Ng01-029J17
Chromosome4 (Build37)
Map Location 147,184,001 - 147,185,235
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
Downstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029J17.bB6Ng01-029J17.g
ACCDH859762DH859763
length1,142862
definitionDH859762|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J17, 5' end.DH859763|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctaggcccacctacttccggaccttttaattcattagcttcc
cagttattcacagcaatttttcttgttttggatttctgcttgtttgcttg
cttgcttgtttttcctttgcttttaatttgtcttttccttaaactcatca
attcatgcaggaatcacacactccccatcaggaaccactccaactctgtt
gcaggctgccttccacacaacttccctggacctactctgcacagcttctc
cacaaagttgctgccagactagaccagagctggatgtagtaggacactgc
acctgggttctgaacccttcagatacaatggatcctgtctaacttctcat
attgtgagtctagccctctggactaaaaatgcacacaattaagcaattcc
tctaaattctgatgctcagaacccaaaacaaacagaaactacgaaaaaat
gtccttgtctcaaactgcaaaccatatatgtaccctataaggagcacaat
ttacatgatatccaagataaagaattgaaaagccacagtcatgatcaagg
agattaaagtttgtaaaccatgaaaatccactcagagaggaagaaaatga
atgatgaacaagaaaataataccagattcctgaaggaaatgtcgacaata
taaaatatttaaattgagttcaataggtgcttagaaatgtcctccccaaa
agaccctgaaaacaaaatgcagtaaggcaaataaaaataatacatagaga
acctgtggaagacagattatcagacttaaagaaaaggtagaggagatgga
tgcctcaatcaaagaatatgatgaattaaaatgatgttaggtcaaggcac
aatactatttactgcttgaagggtgagacaataaagagaaactcctttgg
aaaattgtctagatttttgtcaaatagaaaaaaaaaaggaaagaaagaaa
gtagacgaaagaagaaaaactagaaaaactgcaatacatactgcactgtt
tgttcataaatggtttctgatgtcactgtcacactgaatgtacacccatg
catatcagtatagctggggaagaagactcgagattacccagtctcataga
ctatttgtagagtcactcttttcatgatataatgagtcagga
gaattccaaacccagggtcgcctcaaggactacctagggcattggtgaag
gccaggaagcaaagttcgattttgtttaggtatttggcaagtcattgttt
ggaggcacctataacaaaacaatactgaaaggaagcacacagatccattc
gcaaaattggagcatacctgctatggaatgccacagttccaggagactaa
gtttctcggaaactcttcgcctcaggactgcatccaggcttttggcctgt
catgtgtgtcactactggagtggatgtagcaacatttcaaatgttatctc
ctttccagtttcttctccataaactccctctcccaccccaccccctgctt
ctatgagggtgctcccccacccacccacccactcccacttcaccaccctg
gcattcccttacactgaggcatcaagtcttcacaggaccaagggcctctc
ctcccactgatgccagaaaaggccatcctctgccacatatgctgctgtgt
actctggttggtggtttagtccctgggagctctggggcagggggagggct
gcttggttgatattgttgttgttcttatggggttgcaaatcctttcagct
ccttcagtcctttctctaactcctccattggggtccccgtgttcagtctc
gtggttgactgtgagcaaccacctctgtatttgtcagagagtgttggagc
ctctcagaagacagctatatcaggctcctgtcagcaagcacttcttggca
tctgcaataatatgtgggttttggtgtctgtatgtgggatgcatccccag
ggggggcagtctctggtgggctttccttcagtctctgttcccacgttgtc
tccgtatttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147184001_147185235
seq2: B6Ng01-029J17.b_43_1183

seq1  AATTCTTCTAAGCCTACCTACTTCGGGACCTTTTAATTAATTAGCTTCCC  50
      |||||||||| ||| ||||||||| ||||||||||||| |||||||||||
seq2  AATTCTTCTAGGCCCACCTACTTCCGGACCTTTTAATTCATTAGCTTCCC  50

seq1  AATTCTTCACAGCAATGTTTGGTGTTTTGAATTTTTGCTTGCTTGCTTGC  100
      | || ||||||||||| |||  ||||||| |||| |||||| ||||||||
seq2  AGTTATTCACAGCAATTTTTCTTGTTTTGGATTTCTGCTTGTTTGCTTGC  100

seq1  TTGCTCG---TTCCTTTGCTTTTAATTTGTCTTTTTCTTAAACTCATCTA  147
      ||||| |   ||||||||||||||||||||||||| |||||||||||| |
seq2  TTGCTTGTTTTTCCTTTGCTTTTAATTTGTCTTTTCCTTAAACTCATCAA  150

seq1  ATCAGGCTGGAGGCCCACCCTCCCCAGCAGGAACCACTCCTCCAACTCTG  197
       ||| || |||  | ||| ||||||| |||||||||   |||||||||||
seq2  TTCATGCAGGAATCACACACTCCCCATCAGGAACCA---CTCCAACTCTG  197

seq1  TTGCAGGCTGCCTTCCACAAAACTTCCCAGGACCTACTCTACACAGCTTC  247
      ||||||||||||||||||| |||||||| ||||||||||| |||||||||
seq2  TTGCAGGCTGCCTTCCACACAACTTCCCTGGACCTACTCTGCACAGCTTC  247

seq1  CTCAAAAGGTTGCTGCCAGACTAGACCAGAACTGGATGTAGTAGGACACT  297
        || || |||||||||||||||||||||| |||||||||||||||||||
seq2  TCCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  297

seq1  GCACCTGGGTTCTGAACCCTTCAGATACAACGCAT----ATTAACTTCTC  343
      |||||||||||||||||||||||||||||| | ||      |||||||||
seq2  GCACCTGGGTTCTGAACCCTTCAGATACAATGGATCCTGTCTAACTTCTC  347

seq1  ATATTGTGAGTCTTTTCCTCTGGGCTATAAATGCACACAATTAAGCAGTC  393
      |||||||||||||   ||||||| ||| ||||||||||||||||||| | 
seq2  ATATTGTGAGTCTAGCCCTCTGGACTAAAAATGCACACAATTAAGCAATT  397

seq1  CCTTTGAATTCTGATGCTCAGAACAGATACCCAAAACAAACAATAACTTA  443
      ||| | ||||||||||||||||      ||||||||||||||  ||||  
seq2  CCTCTAAATTCTGATGCTCAGA------ACCCAAAACAAACAGAAACTAC  441

seq1  GATAAAATGTCCTTGGCTCAAACCGCAAACCATATAGGTATCCTATAAGG  493
      || |||||||||||| ||||||| |||||||||||| ||| |||||||||
seq2  GAAAAAATGTCCTTGTCTCAAACTGCAAACCATATATGTACCCTATAAGG  491

seq1  AGCACAATTTATTTGATATCGAAGACAAAGAATAGAAAACCCACAATCAT  543
      |||||||||||  ||||||| |||| ||||||| ||||| ||||| ||||
seq2  AGCACAATTTACATGATATCCAAGATAAAGAATTGAAAAGCCACAGTCAT  541

seq1  GATCAAGGACATTAAAGTTTGTAAACCATGTAAATCCACTCACTCAGAGA  593
      ||||||||| |||||||||||||||||||| |||||    ||||||||||
seq2  GATCAAGGAGATTAAAGTTTGTAAACCATGAAAATC----CACTCAGAGA  587

seq1  GAAACGAAATAAATCATGGGCAAGAAAATAATACCAGATTCCTGAAGGAA  643
      | ||  |||| ||| |||  ||||||||||||||||||||||||||||||
seq2  GGAAGAAAATGAATGATGAACAAGAAAATAATACCAGATTCCTGAAGGAA  637

seq1  AT---GACAATATAAAATATTAAAATTGACTTCAATAAGTGCTTAGAAAT  690
      ||   |||||||||||||||| ||||||| ||||||| ||||||||||||
seq2  ATGTCGACAATATAAAATATTTAAATTGAGTTCAATAGGTGCTTAGAAAT  687

seq1  G---CCAAAAAAAAATCCTGAAAAGAAAATGCAGTAAGGCAAATAAAAAT  737
      |    |   |||| | |||||||| |||||||||||||||||||||||||
seq2  GTCCTCCCCAAAAGACCCTGAAAACAAAATGCAGTAAGGCAAATAAAAAT  737

seq1  AATACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAGGT  787
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATACATAGAGAACCTGTGGAAGACAGATTATCAGACTTAAAGAAAAGGT  787

seq1  AGAGGAGGTGGATGCCTCAATCAAAGAAAATGATGAATTAAAATGATGTT  837
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGGAGATGGATGCCTCAATCAAAGAATATGATGAATTAAAATGATGTT  837

seq1  AGGTCAAGGCACAATATTATTTACTTCTTGAAGGGTGAGACAATAAAGAG  887
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  AGGTCAAGGCACAATACTATTTACTGCTTGAAGGGTGAGACAATAAAGAG  887

seq1  AAACTCCTTTGGAAAACTGTCTTGATCTTTGTCAAAAAAAAAAAAGTAAG  937
      |||||||||||||||| ||||| ||| ||||||||| | |||||      
seq2  AAACTCCTTTGGAAAATTGTCTAGATTTTTGTCAAATAGAAAAA------  931

seq1  GAAAGGAAGTAAGGAAGTAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGA  987
                        || |||||||||||||||| |           
seq2  ------------------AAAAAGGAAAGAAAGAAAGTA-----------  952

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGGATGAA  1037
                                                  || |||
seq2  --------------------------------------------GACGAA  958

seq1  AGAAAGAAAACTTGAACAAAATTACAATACATACTGCACTGTTTGTTGAT  1087
      ||||  |||||| ||  |||| | ||||||||||||||||||||||| ||
seq2  AGAAGAAAAACTAGA--AAAACTGCAATACATACTGCACTGTTTGTTCAT  1006

seq1  AAATGGTTTCCTGATTGTTCCCTGTAACACTCTATG-ACACCCATGCATA  1136
      ||||||||| |||||   || |||| |||||  ||| |||||||||||||
seq2  AAATGGTTT-CTGAT--GTCACTGTCACACTGAATGTACACCCATGCATA  1053

seq1  TCAGTATAAGCTGGGGAAAGGAGACTCGAGATTTACCCAAGTCTCATTAG  1186
      ||||||| |||||||| ||| |||||||||| |||||| ||||||| |||
seq2  TCAGTAT-AGCTGGGG-AAGAAGACTCGAGA-TTACCC-AGTCTCA-TAG  1098

seq1  ACTCTTGCTAGGAAGTCAACTCTTTTCATGATTGTAATGAGTTCCAGGA  1235
      ||| ||  |||  |||| ||||||||||||| | ||||||||  |||||
seq2  ACTATTTGTAG--AGTC-ACTCTTTTCATGA-TATAATGAGT--CAGGA  1141