BAC Information

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BAC

Clone NameB6Ng01-029N14
Chromosome4 (Build37)
Map Location 138,744,587 - 138,927,527
singlet/doubletdoublet
Overlap gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4
Downstream geneZubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029N14.bB6Ng01-029N14.g
ACCDH859928DH859929
length1,0431,072
definitionDH859928|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N14, 5' end.DH859929|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,744,587 - 138,745,640)(138,926,446 - 138,927,527)
sequence
gaattccagacagagctacacagggggaacccatgactgctgtgtccagc
ctgactgccccgcccctgcatggaagagaggttcttaattgctgagccac
cttcccatgccttttatcttatttgagacagtctctctcattgaacctgg
agtatactaacttggctaagctggctggccagcaagaaccttttgttttc
ttttcttttcttttctttttttttttttttttcttttcaagatagggttt
ctttgtgtgtagtcctggctgtcctggaaccagctctgtagaccaggctg
gcctctacctgagagacctacctgcctctgcctcttaagtggtgggatta
aaggcatgcgccaccacagcctggctcagcctcaggtccttcctcatgta
tgcggggcaagcaatttaccctacagccacctccccagcctccggctccc
agctagcatggggttaaagcagggaagcaatgtgctcacactggggctat
gaatgtggactctggttctagacgaccttgaactaaactcataggtttgg
acacgtacgttccttagcctctctgagaataacagcagtagcgatcctac
aaggtagacacaaagattgggaaactacagacaatccactatggataaga
ctttctggcaatcttctcttcaggtgtgacttatttcatgttattatccc
ctggcttttgagagagatacgatctcttctttgctccttgattctccgtg
atctcttctctctacacccatcaccaagtgtatgcatctcaacatcttgt
gcttttaaagacctttatatgccactcactagcggcaggcttctacccag
ttccttactgggcctctccactgaagtttccagtaggcatctacacaact
tgactgaaggcagtgttcaccctctcaccctcctgacccactccaccctc
cctcccacctaacccacccatccctatgcagtctgcccagttcaagggca
gaatctttcactatgaactcagtcttagcatctaccctctttc
gaattccagtactggtactgtgagcagaaggggaggcaatctggatttag
tgtcagatcacctggaaagggaacgccgttcacagcagctgcagaccagg
gaggaaaagacccagctgctctctgcttttcttcctgttgcagttttcct
aacttccatcactaacggctttgtctaggctgtccaaagttgtccacgac
acaggaactgccaccgctctctgggaacagcagccaacctctgggtgctt
atgaggtacactgactgagttaacccggaggaaaccaccactctccttat
ttcacagtgcaaccagagagctcacaagatcagttcaaggacctacaggc
aatgggaagagcggaacatcccacgccctcaaccctgactcccaggcccc
tctgaccctgtgctgcctgccaggggctggaatcttaagaaagcacaaag
tagctgctgtttccagaaaggacatgcgacttggggacctcctgagctgt
gcagtgagtccttaccaccacccagttctctgaatgcacaaggtggacag
ggcccctggccttcttctgcacggaggagtggatgatgcggccagtgaca
ccatcaatgaggaagatgccaataaaggtgcgctcgtggtggacatccgt
gctctctgtcaccacggccagcaagttggggttcagactctgggaagaga
aaccagtgacaaactttaggaaccacagcagcatgccatgtacttggttc
tcctgtgagctctggggcctgaggccagtaaggagctcagcacctggcag
atgccccggcactgctgagcaaacagctcacggtgtggcttctcagcaag
gactggggccacactgaacgcctagtgtgtcccttagtcctctcagaagc
cctatgatgcagccatttttccctccactatgtggcgctgaggatcaaac
acaggtgcaagagcctttgtctgctaggcatctagctcactactactttt
ttttttaatatcactatgtagtctcagtttacaatctctgcctcagctcc
tggtgagaataagtgtgccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138744587_138745640
seq2: B6Ng01-029N14.b_45_1087

seq1  GAATTCCAGACAGAGCTACACAGGGGGAACCCATGACTGCTGTGTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGAGCTACACAGGGGGAACCCATGACTGCTGTGTCCAGC  50

seq1  CTGACTGCCCCGCCCCTGCATGGAAGAGAGGTTCTTAATTGCTGAGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCCCCGCCCCTGCATGGAAGAGAGGTTCTTAATTGCTGAGCCAC  100

seq1  CTTCCCATGCCTTTTATCTTATTTGAGACAGTCTCTCTCATTGAACCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATGCCTTTTATCTTATTTGAGACAGTCTCTCTCATTGAACCTGG  150

seq1  AGTATACTAACTTGGCTAAGCTGGCTGGCCAGCAAGAACCTTTTGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTAACTTGGCTAAGCTGGCTGGCCAGCAAGAACCTTTTGTTTTC  200

seq1  TTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTCTTTTCAAGATAGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTCTTTTCAAGATAGGGTTT  250

seq1  CTTTGTGTGTAGTCCTGGCTGTCCTGGAACCAGCTCTGTAGACCAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGTAGTCCTGGCTGTCCTGGAACCAGCTCTGTAGACCAGGCTG  300

seq1  GCCTCTACCTGAGAGACCTACCTGCCTCTGCCTCTTAAGTGGTGGGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTACCTGAGAGACCTACCTGCCTCTGCCTCTTAAGTGGTGGGATTA  350

seq1  AAGGCATGCGCCACCACAGCCTGGCTCAGCCTCAGGTCCTTCCTCATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGCGCCACCACAGCCTGGCTCAGCCTCAGGTCCTTCCTCATGTA  400

seq1  TGCGGGGCAAGCAATTTACCCTACAGCCACCTCCCCAGCCTCCGGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGCAAGCAATTTACCCTACAGCCACCTCCCCAGCCTCCGGCTCCC  450

seq1  AGCTAGCATGGGGTTAAAGCAGGGAAGCAATGTGCTCACACTGGGGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATGGGGTTAAAGCAGGGAAGCAATGTGCTCACACTGGGGCTAT  500

seq1  GAATGTGGACTCTGGTTCTAGACGACCTTGAACTAAACTCATAGGTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGACTCTGGTTCTAGACGACCTTGAACTAAACTCATAGGTTTGG  550

seq1  ACACGTACGTTCCTTAGCCTCTCTGAGAATAACAGCAGTAGCGATCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTACGTTCCTTAGCCTCTCTGAGAATAACAGCAGTAGCGATCCTAC  600

seq1  AAGGTAGACACAAAGATTGGGAAACTACAGACAATCCACTATGGATAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGACACAAAGATTGGGAAACTACAGACAATCCACTATGGATAAGA  650

seq1  CTTTCTGGCAATCTTCTCTTCAGGTGTGACTTATTTCATGTTATTATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGCAATCTTCTCTTCAGGTGTGACTTATTTCATGTTATTATCCC  700

seq1  CTGGCTTTTGAGAGAGATACGATCTCTTCTTTGCTCCTTGATTCTCCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTTGAGAGAGATACGATCTCTTCTTTGCTCCTTGATTCTCCGTG  750

seq1  ATCTCTTCTCTCTACACCCATCACCAAGTGTATGCATCTCAACATCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTCTCTACACCCATCACCAAGTGTATGCATCTCAACATCTTGT  800

seq1  GCTTTTAAAGACCTTTATATGCCACTCACTAGCGGCAGGCTTCTACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAAGACCTTTATATGCCACTCACTAGCGGCAGGCTTCTACCCAG  850

seq1  TTCCTTACTGGGCCTCTCCACTGAAGTTTCCAGTAGGCATCTTACACAAC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCCTTACTGGGCCTCTCCACTGAAGTTTCCAGTAGGCATC-TACACAAC  899

seq1  TTGACTGAAGGCAGTGTTCACCCTCTCACCCTCCTGACCCCACTCCACCC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGACTGAAGGCAGTGTTCACCCTCTCACCCTCCTGA-CCCACTCCACCC  948

seq1  TCCCCTCCCCACCTAACCCCACCCCATCCCTATTGCAGTCTTGCCCAGTT  1000
      ||||   ||||||||||||   |||||||||| ||||||| |||||||||
seq2  TCCC--TCCCACCTAACCC--ACCCATCCCTA-TGCAGTC-TGCCCAGTT  992

seq1  CAAGGGCAGATCTTTTCACTATGAACTCAAGTCCTTAGCATCTTCACCTC  1050
      ||||||||||   ||||||||||||||| ||| |||||||||| | ||||
seq2  CAAGGGCAGAATCTTTCACTATGAACTC-AGT-CTTAGCATCTAC-CCTC  1039

seq1  TTTC  1054
      ||||
seq2  TTTC  1043

seq1: chr4_138926446_138927527
seq2: B6Ng01-029N14.g_67_1138 (reverse)

seq1  AGTGGCACACTTAATTCTCACTCAGGAGGCTGAGGCAGGAGGATTGTAAA  50
      |||||||||||| |||||||| ||||| ||||||||||   |||||||||
seq2  AGTGGCACACTT-ATTCTCAC-CAGGA-GCTGAGGCAG--AGATTGTAAA  45

seq1  CTTGAGACTACATAGTGATATTAAAAAAAAAAAGGTAGTAGTGAGCTAGA  100
      | ||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  C-TGAGACTACATAGTGATATTAAAAAAAAAA--GTAGTAGTGAGCTAGA  92

seq1  TGGCTTAGCAGACAAAGGCTCTTGCACCTGTGTTTGATCCTCAGCGCCCA  150
      | || ||||||||||||||||||||||||||||||||||||||||| |||
seq2  T-GCCTAGCAGACAAAGGCTCTTGCACCTGTGTTTGATCCTCAGCG-CCA  140

seq1  CATAGTGGAGGGAAAAATGGCTGCATCATAGGGCTTCTGAGAGGACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGAGGGAAAAATGGCTGCATCATAGGGCTTCTGAGAGGACTAAG  190

seq1  GGACACACTAGGCGTTCAGTGTGGCCCCAGTCCTTGCTGAGAAGCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACTAGGCGTTCAGTGTGGCCCCAGTCCTTGCTGAGAAGCCACAC  240

seq1  CGTGAGCTGTTTGCTCAGCAGTGCCGGGGCATCTGCCAGGTGCTGAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCTGTTTGCTCAGCAGTGCCGGGGCATCTGCCAGGTGCTGAGCTC  290

seq1  CTTACTGGCCTCAGGCCCCAGAGCTCACAGGAGAACCAAGTACATGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGGCCTCAGGCCCCAGAGCTCACAGGAGAACCAAGTACATGGCAT  340

seq1  GCTGCTGTGGTTCCTAAAGTTTGTCACTGGTTTCTCTTCCCAGAGTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGGTTCCTAAAGTTTGTCACTGGTTTCTCTTCCCAGAGTCTGA  390

seq1  ACCCCAACTTGCTGGCCGTGGTGACAGAGAGCACGGATGTCCACCACGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACTTGCTGGCCGTGGTGACAGAGAGCACGGATGTCCACCACGAG  440

seq1  CGCACCTTTATTGGCATCTTCCTCATTGATGGTGTCACTGGCCGCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTTTATTGGCATCTTCCTCATTGATGGTGTCACTGGCCGCATCAT  490

seq1  CCACTCCTCCGTGCAGAAGAAGGCCAGGGGCCCTGTCCACCTTGTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTCCGTGCAGAAGAAGGCCAGGGGCCCTGTCCACCTTGTGCATT  540

seq1  CAGAGAACTGGGTGGTGGTAAGGACTCACTGCACAGCTCAGGAGGTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTGGGTGGTGGTAAGGACTCACTGCACAGCTCAGGAGGTCCCC  590

seq1  AAGTCGCATGTCCTTTCTGGAAACAGCAGCTACTTTGTGCTTTCTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGCATGTCCTTTCTGGAAACAGCAGCTACTTTGTGCTTTCTTAAGA  640

seq1  TTCCAGCCCCTGGCAGGCAGCACAGGGTCAGAGGGGCCTGGGAGTCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCCCTGGCAGGCAGCACAGGGTCAGAGGGGCCTGGGAGTCAGGG  690

seq1  TTGAGGGCGTGGGATGTTCCGCTCTTCCCATTGCCTGTAGGTCCTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCGTGGGATGTTCCGCTCTTCCCATTGCCTGTAGGTCCTTGAAC  740

seq1  TGATCTTGTGAGCTCTCTGGTTGCACTGTGAAATAAGGAGAGTGGTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGTGAGCTCTCTGGTTGCACTGTGAAATAAGGAGAGTGGTGGTT  790

seq1  TCCTCCGGGTTAACTCAGTCAGTGTACCTCATAAGCACCCAGAGGTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGGGTTAACTCAGTCAGTGTACCTCATAAGCACCCAGAGGTTGGC  840

seq1  TGCTGTTCCCAGAGAGCGGTGGCAGTTCCTGTGTCGTGGACAACTTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCCCAGAGAGCGGTGGCAGTTCCTGTGTCGTGGACAACTTTGGA  890

seq1  CAGCCTAGACAAAGCCGTTAGTGATGGAAGTTAGGAAAACTGCAACAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGACAAAGCCGTTAGTGATGGAAGTTAGGAAAACTGCAACAGGA  940

seq1  AGAAAAGCAGAGAGCAGCTGGGTCTTTTCCTCCCTGGTCTGCAGCTGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAGAGAGCAGCTGGGTCTTTTCCTCCCTGGTCTGCAGCTGCTG  990

seq1  TGAACGGCGTTCCCTTTCCAGGTGATCTGACACTAAATCCAGATTGCCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGGCGTTCCCTTTCCAGGTGATCTGACACTAAATCCAGATTGCCTC  1040

seq1  CCCTTCTGCTCACAGTACCAGTACTGGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCTCACAGTACCAGTACTGGAATTC  1072