BAC Information

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BAC

Clone NameB6Ng01-029N16
Chromosome4 (Build37)
Map Location 136,192,520 - 136,341,919
singlet/doubletdoublet
Overlap geneBC029684, Ephb2
Upstream geneIl28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik
Downstream geneC1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029N16.bB6Ng01-029N16.g
ACCDH859931DH859932
length1,098550
definitionDH859931|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N16, 5' end.DH859932|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,192,520 - 136,193,633)(136,341,364 - 136,341,919)
sequence
gaattctacatgttgagctgaaaacagcagaaggggattgtaatgccata
ctgggcggagcttatgcataggaggcctcaaagcccacctacaattcctc
caatgaggccacacctcctccgatgaggccacacctcctaatagttctac
ttcccaagggccaagcaaatttaatccaccacaatgacgaaggccctttt
tacagtttgcactggtgagggagtcacagcgaagaaataaacgacacaaa
tagagttttgccatgatggatatcaatagtaaacagttaaagaaaggtct
gacctatgaacaggaagtttagctttgcgaacttggggtagggagtgagg
gataagacaagtggacagggccagatttccctctgcttcgccaaatacta
gactggccttgcttcctttctctccctcctggtgccaccacactgtcctg
gagatcatgtagagcaccctatccttgccccctttctccctccagatgcc
actacagcacgctggccttctctctcctagcccatgtgctggctgcgcac
agggcacagggcgactatgagcgctgggtgtctgagcaggtgctggaacc
gctggggatgagtgacaccggctttgcactgacaggaacagtgcgtgcac
gtctggctgctggcttctatggcagcggcaggtccgccccgctctacgat
ctgggctggtaccggccatcgggccagatgtactcgacagctgcagacct
ggccaggcttgcggctgcgctcctgggtgcaggtccccgacggctgctac
ggcccgacagcctggccacattgctagcaccactacgcgcctgcgcccac
ggctactttgctagtgaaaccggtacaccctgggagttccacgagaggcg
tggataccgcgtggcgcgcaaggatggcgacttggacggctatgccgcca
gcctggcgctcgtgccaccgctgcgcttggatttgtgctgttgctagccg
gcctcgccttcccaccccgactgtggctgacgcctggatcctgctgctag
cctgacgcgcatgcgagagctgacttgctccggcccgcccgccgcgcg
catccccagcacttcaggaagtcctgtggggtggtgaatgcctgtaatcc
ttgcacttgggaggtaaaggtaagaggatcagacattcagggtcaccttc
agctacagggtcagaggccagattgcacttcataagacctgtctttaaaa
aagaaaaaacatctgtactaatcacatacagactgttttttttttttttt
ttttttgctctggccctccccagcaatgaggtttgagggcttccacagct
cttgtattgtcttccatattgtcaatggagagatgacctcaaattcctgg
aaggagcccatgggttctgtgcagacctctttgcttttgctcttgagtag
aaggaactccggcacctgaaatctgggtatccgtggagttcccggagcca
gtaccccccagccactgagcgacagctgtccggtgtttaagccgtcttca
tgcctccgagggtgtctgctggaagaagtcactaggcagccaggaggatg
gtgtgatgcgggatgagcctgggaggcctgatgatggggtagaggtgagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136192520_136193633
seq2: B6Ng01-029N16.b_48_1145

seq1  GAATTCTACATGTTGAGCTGAAAACAGCAGAAGGGGATTGTAATGCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATGTTGAGCTGAAAACAGCAGAAGGGGATTGTAATGCCATA  50

seq1  CTGGGCGGAGCTTATGCATAGGAGGCCTCAAAGCCCACCTACAATTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGGAGCTTATGCATAGGAGGCCTCAAAGCCCACCTACAATTCCTC  100

seq1  CAATGAGGCCACACCTCCTCCGATGAGGCCACACCTCCTAATAGTTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGCCACACCTCCTCCGATGAGGCCACACCTCCTAATAGTTCTAC  150

seq1  TTCCCAAGGGCCAAGCAAATTTAATCCACCACAATGACGAAGGCCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGGGCCAAGCAAATTTAATCCACCACAATGACGAAGGCCCTTTT  200

seq1  TACAGTTTGCACTGGTGAGGGAGTCACAGCGAAGAAATAAACGACACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGCACTGGTGAGGGAGTCACAGCGAAGAAATAAACGACACAAA  250

seq1  TAGAGTTTTGCCATGATGGATATCAATAGTAAACAGTTAAAGAAAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTTGCCATGATGGATATCAATAGTAAACAGTTAAAGAAAGGTCT  300

seq1  GACCTATGAACAGGAAGTTTAGCTTTGCGAACTTGGGGTAGGGAGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGAACAGGAAGTTTAGCTTTGCGAACTTGGGGTAGGGAGTGAGG  350

seq1  GATAAGACAAGTGGACAGGGCCAGATTTCCCTCTGCTTCGCCAAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGACAAGTGGACAGGGCCAGATTTCCCTCTGCTTCGCCAAATACTA  400

seq1  GACTGGCCTTGCTTCCTTTCTCTCCCTCCTGGTGCCACCACACTGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTTGCTTCCTTTCTCTCCCTCCTGGTGCCACCACACTGTCCTG  450

seq1  GAGATCATGTAGAGCACCCTATCCTTGCCCCCTTTCTCCCTCCAGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGTAGAGCACCCTATCCTTGCCCCCTTTCTCCCTCCAGATGCC  500

seq1  ACTACAGCACGCTGGCCTTCTCTCTCCTAGCCCATGTGCTGGCTGCGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCACGCTGGCCTTCTCTCTCCTAGCCCATGTGCTGGCTGCGCAC  550

seq1  AGGGCACAGGGCGACTATGAGCGCTGGGTGTCTGAGCAGGTGCTGGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGCGACTATGAGCGCTGGGTGTCTGAGCAGGTGCTGGAACC  600

seq1  GCTGGGGATGAGTGACACCGGCTTTGCACTGACAGGAACAGTGCGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGATGAGTGACACCGGCTTTGCACTGACAGGAACAGTGCGTGCAC  650

seq1  GTCTGGCTGCTGGCTTCTATGGCAGCGGCAGGTCCGCCCCGCTCTACGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTGCTGGCTTCTATGGCAGCGGCAGGTCCGCCCCGCTCTACGAT  700

seq1  CTGGGCTGGTACCGGCCATCGGGCCAGATGTACTCGACAGCTGCAGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGGTACCGGCCATCGGGCCAGATGTACTCGACAGCTGCAGACCT  750

seq1  GGCCAGGCTTGCGGCTGCGCTCCTGGGTGCAGGTCCCCGACGGCTGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTTGCGGCTGCGCTCCTGGGTGCAGGTCCCCGACGGCTGCTAC  800

seq1  GGCCCGACAGCCTGGCCACATTGCTAGCACCACTACGCGCCTGCGCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGACAGCCTGGCCACATTGCTAGCACCACTACGCGCCTGCGCCCAC  850

seq1  GGCTACTTTGCTAGTGAAACCGGTACACCCTGGGAGTTCCACGAGAGGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTTGCTAGTGAAACCGGTACACCCTGGGAGTTCCACGAGAGGCG  900

seq1  TGGATACCGCGTGGCGCGCAAGGATGGCGACTTGGACGGCTATGCCGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCGCGTGGCGCGCAAGGATGGCGACTTGGACGGCTATGCCGCCA  950

seq1  GCCTGGCGCTCGTGCCACCGCTGCGCTTGGGATTTGTGCTGTTGCTAGCC  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCTGGCGCTCGTGCCACCGCTGCGCTT-GGATTTGTGCTGTTGCTAGCC  999

seq1  GGGCCTCGCCCTCCCACGCGCGACCTGGTGGCTGACGCCCTGGATACGCT  1050
       ||||||||| |||||| | ||||   |||||||||| |||||||   ||
seq2  -GGCCTCGCCTTCCCAC-CCCGAC--TGTGGCTGACG-CCTGGAT--CCT  1042

seq1  GCTGCCAGCCCTGGAGCGCGCATTGCGAGAGGCTGAGCTTGCCCCCGCGC  1100
      ||||| || ||||   |||||| ||||||| ||||| ||||| || || |
seq2  GCTGCTAG-CCTG--ACGCGCA-TGCGAGA-GCTGA-CTTGCTCCGGCCC  1086

seq1  CCCCGCCCCGCGCG  1114
       |||||| ||||  
seq2  GCCCGCCGCGCG--  1098

seq1: chr4_136341364_136341919
seq2: B6Ng01-029N16.g_70_625 (reverse)

seq1  CCTCACCTCTACCCCATCATCAGGCCTCCCAGGCTCATCCCGCATCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTCTACCCCATCATCAGGCCTCCCAGGCTCATCCCGCATCACAC  50

seq1  CATCCTCCTGGCTGCCTAGTGACTTCTTCCAGCAGACACCCTCGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTGGCTGCCTAGTGACTTCTTCCAGCAGACACCCTCGGAGGCA  100

seq1  TGAAGACGGCTTAAACACCGGACAGCTGTCGCTCAGTGGCTGGGGGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACGGCTTAAACACCGGACAGCTGTCGCTCAGTGGCTGGGGGGTAC  150

seq1  TGGCTCCGGGAACTCCACGGATACCCAGATTTCAGGTGCCGGAGTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGGGAACTCCACGGATACCCAGATTTCAGGTGCCGGAGTTCCTT  200

seq1  CTACTCAAGAGCAAAAGCAAAGAGGTCTGCACAGAACCCATGGGCTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAAGAGCAAAAGCAAAGAGGTCTGCACAGAACCCATGGGCTCCTT  250

seq1  CCAGGAATTTGAGGTCATCTCTCCATTGACAATATGGAAGACAATACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATTTGAGGTCATCTCTCCATTGACAATATGGAAGACAATACAAG  300

seq1  AGCTGTGGAAGCCCTCAAACCTCATTGCTGGGGAGGGCCAGAGCAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGAAGCCCTCAAACCTCATTGCTGGGGAGGGCCAGAGCAAAAAA  350

seq1  AAAAAAAAAAAAAAACAGTCTGTATGTGATTAGTACAGATGTTTTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACAGTCTGTATGTGATTAGTACAGATGTTTTTTCTT  400

seq1  TTTTAAAGACAGGTCTTATGAAGTGCAATCTGGCCTCTGACCCTGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACAGGTCTTATGAAGTGCAATCTGGCCTCTGACCCTGTAGCT  450

seq1  GAAGGTGACCCTGAATGTCTGATCCTCTTACCTTTACCTCCCAAGTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGACCCTGAATGTCTGATCCTCTTACCTTTACCTCCCAAGTGCAA  500

seq1  GGATTACAGGCATTCACCACCCCACAGGACTTCCTGAAGTGCTGGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAGGCATTCACCACCCCACAGGACTTCCTGAAGTGCTGGGGATG  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556