BAC Information

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BAC

Clone NameB6Ng01-029O06
Chromosome4 (Build37)
Map Location 69,696,917 - 69,698,010
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497
Downstream geneLOC671064, Cdk5rap2, Megf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029O06.bB6Ng01-029O06.g
ACCDH859957DH859958
length4961,094
definitionDH859957|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O06, 5' end.DH859958|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttaaaattgtgataaggacacatgatgtgtaggtctccacaactgatgg
cttctgacaggagtgaaagtagagaaggactttaaggggctgaccaccac
gaggcggtgagtgagtatacgggaaacatacattggagttggtggggttt
ttcgtttgtttgctttggtttttgtcgctgtttattttcctttttttttt
tttctttttgggggcagtctacaggtggagggtggatctgggaggaatag
gaaatgagggtcctgggggctcatgttttgaaatcccaaataaacaacaa
aaatatggaaaaaatactggtaagtatggtgaagtgtagctctccacagc
tgatgacttctggcaggggtgcaggttgggaatgactcagttttctttaa
ggggctggccatgggagtttgagtttgatgcacttgtgtgtttattttct
ttttccttatttctgtatgtatgtatgtatgtatgtatgtatgtat

gaattctgttgcctcttctgagagaagaggctgctagaggatctcaaagc
tttcctctaagtagccacccttcttgctacaagctgctttactggagcag
ttttcactcctttccccagggaaagctgctataatcttgccctgccaagc
ttcaggtgtctgatataaagacagaataacctgagccctccctctgccca
gccctgcccctcctctcagaggcaccatgcccgggagttgcactgagcca
atacctctcttcacacatctgcttagagccatctgttttcagaaagtcac
acccttacatgatcccacttccttaggactcagcatctttcctatagtgg
aaggtagctgcctccttgtgggtcttctaaagacataccagagtcactgt
tgtttatggggatccacaggaaacaaagggcagtgtgagagtcatttcta
aagtttcagctacagcagggttttcagtttatccctaaaattctattctt
tttttctctttctttaaaatatgctttaaaatgttttaggaattcaatgt
tctgaattttgggttttgttggaagtcataattttaagacagtatcactg
tatagccccttagtaactcaaaatttattgtgtagtactgactagccttg
aacttacaccaagcctcatgctttttgcttcttatgcctgcttatagtat
ttagaatccacacaaataaaatccaaagcaaccacaaacccttttaggtc
ctttaaaggacagggagctgttggtactgcactactctgtaatactcaag
acagataatattgaaacattgataagaaattggaagccctgtgcagtgtt
actgggagtgctagtgggtatgggaacaggatacaggaccctcctaacac
ctgctaagtaattacccaaaagaatgaaacaggatcagactgatggtgtg
tatgcagttaatcctagtgctcagagcagagcaggcagatctctgatctg
agttgagttagcttgtctagagagagtccaggacagctgaggaggttcca
agaggctatctcaagatcaaaatattatatatatatataataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_69696917_69698010
seq2: B6Ng01-029O06.g_69_1162

seq1  GAATTCTGTTGCCTCTTCTGAGAGAAGAGGCTGCTAGAGGATCTCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCCTCTTCTGAGAGAAGAGGCTGCTAGAGGATCTCAAAGC  50

seq1  TTTCCTCTAAGTAGCCACCCTTCTTGCTACAAGCTGCTTTACTGGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTAAGTAGCCACCCTTCTTGCTACAAGCTGCTTTACTGGAGCAG  100

seq1  TTTTCACTCCTTTCCCCAGGGAAAGCTGCTATAATCTTGCCCTGCCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCCTTTCCCCAGGGAAAGCTGCTATAATCTTGCCCTGCCAAGC  150

seq1  TTCAGGTGTCTGATATAAAGACAGAATAACCTGAGCCCTCCCTCTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGTCTGATATAAAGACAGAATAACCTGAGCCCTCCCTCTGCCCA  200

seq1  GCCCTGCCCCTCCTCTCAGAGGCACCATGCCCGGGAGTTGCACTGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCCCTCCTCTCAGAGGCACCATGCCCGGGAGTTGCACTGAGCCA  250

seq1  ATACCTCTCTTCACACATCTGCTTAGAGCCATCTGTTTTCAGAAAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTCTTCACACATCTGCTTAGAGCCATCTGTTTTCAGAAAGTCAC  300

seq1  ACCCTTACATGATCCCACTTCCTTAGGACTCAGCATCTTTCCTATAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTACATGATCCCACTTCCTTAGGACTCAGCATCTTTCCTATAGTGG  350

seq1  AAGGTAGCTGCCTCCTTGTGGGTCTTCTAAAGACATACCAGAGTCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCTGCCTCCTTGTGGGTCTTCTAAAGACATACCAGAGTCACTGT  400

seq1  TGTTTATGGGGATCCACAGGAAACAAAGGGCAGTGTGAGAGTCATTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGGGGATCCACAGGAAACAAAGGGCAGTGTGAGAGTCATTTCTA  450

seq1  AAGTTTCAGCTACAGCAGGGTTTTCAGTTTATCCCTAAAATTCTATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGCTACAGCAGGGTTTTCAGTTTATCCCTAAAATTCTATTCTT  500

seq1  TTTTTCTCTTTCTTTAAAATATGCTTTAAAATGTTTTAGGAATTCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTTCTTTAAAATATGCTTTAAAATGTTTTAGGAATTCAATGT  550

seq1  TCTGAATTTTGGGTTTTGTTGGAAGTCATAATTTTAAGACAGTATCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTTGGGTTTTGTTGGAAGTCATAATTTTAAGACAGTATCACTG  600

seq1  TATAGCCCCTTAGTAACTCAAAATTTATTGTGTAGTACTGACTAGCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCCTTAGTAACTCAAAATTTATTGTGTAGTACTGACTAGCCTTG  650

seq1  AACTTACACCAAGCCTCATGCTTTTTGCTTCTTATGCCTGCTTATAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACACCAAGCCTCATGCTTTTTGCTTCTTATGCCTGCTTATAGTAT  700

seq1  TTAGAATCCACACAAATAAAATCCAAAGCAACCACAAACCCTTTTAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCCACACAAATAAAATCCAAAGCAACCACAAACCCTTTTAGGTC  750

seq1  CTTTAAAGGACAGGGAGCTGTTGGTACTGCACTACTCTGTAATACTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGACAGGGAGCTGTTGGTACTGCACTACTCTGTAATACTCAAG  800

seq1  ACAGATAATATTGAAACATTGATAAGAAATTGGAAGCCCTGTGCAGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATATTGAAACATTGATAAGAAATTGGAAGCCCTGTGCAGTGTT  850

seq1  ACTGGGAGTGCTAGTGGGTATGGGAACAGGATACAGGACCCTCCTAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGTGCTAGTGGGTATGGGAACAGGATACAGGACCCTCCTAACAC  900

seq1  CTGCTAAGTAATTACCCAAAAGAATGAAAACAGGATCAAGACTGATGGTG  950
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CTGCTAAGTAATTACCCAAAAGAATG-AAACAGGATC-AGACTGATGGTG  948

seq1  TGTATGCAGTTAATCCTAGTGCTCAGGAGGCAGAAGCAGGCAGATCTCTG  1000
      ||||||||||||||||||||||||||   |||| ||||||||||||||||
seq2  TGTATGCAGTTAATCCTAGTGCTCAG--AGCAG-AGCAGGCAGATCTCTG  995

seq1  ATCTGAGGTTGAGGTTAGCTTGGTCTAGAGAGAGTTCCAGGACAGCTGAG  1050
      |||||| ||||| |||||||| |||||||||||| |||||||||||||||
seq2  ATCTGA-GTTGA-GTTAGCTT-GTCTAGAGAGAG-TCCAGGACAGCTGAG  1041

seq1  GATGTTCAGAGAAGGCCTATCTCAAAGATCAAAA------------ATAT  1088
      || ||||  |||  | ||||||| ||||||||||            ||||
seq2  GAGGTTCCAAGA--GGCTATCTC-AAGATCAAAATATTATATATATATAT  1088

seq1  AATAAT  1094
      ||||||
seq2  AATAAT  1094


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