BAC Information

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BAC

Clone NameB6Ng01-030A10
Chromosome4 (Build37)
Map Location 56,541,952 - 56,604,069
singlet/doubletdoublet
Overlap genenone
Upstream geneKlf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A10.bB6Ng01-030A10.g
ACCDH860053DH860054
length1,0901,145
definitionDH860053|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A10, 5' end.DH860054|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,541,952 - 56,543,066)(56,602,909 - 56,604,069)
sequence
gaattcttttagcattatgaagtttatttttgtttctcctttagaatcaa
ggtgaaatatctcaaagtcatcaatttagtaacaaagatgggatttaatt
ttattattattatttttgttgttgttgttgttcttgttgttgttgctttc
tgcgatttgtatggagccaggcaagcaggcaggcaggcaggctgccagga
aaagagaatgggatgcaggtgctatggcacgtttagaggtcagagaatca
cttccagaagtcaattctcccctcccaccataggttctatggattcagca
ggttgttgggactgctcaggaatcacttgtgcccagtgagccatctcatc
agcccaaagacaaggcttaagcccccgtctcctaaccataaacttggggt
tcagctgcatgaatcaacctgctcagttgatagtaatacataatgtctga
taccatgacttcaaaggaaagccattgatgccatcaggtgtcactttacc
acagggacacaaaagctgtcatcctgacccagtttactaattcaatatag
ttgggaattttaggccttgactaatcttctgtcttggtggtttgtattaa
ctattgtctctttaaggcactaaagcaaaagaaatgaacatgaactagac
ttaggactgtagtcaacagcagagaaagtaagagggcgcccttctgtgct
ttcctaagtaactagaaaatgggaagtagaaaaggaatgaactgtggtaa
ccagaatctagatcacaactccatttctgtccctaaaggaaattcccatc
aaatggtcctcagttttcccatactcaaaattcaatttccccacatgcaa
aatgaatcatcatcaacctcatgaaaactccaagaaatcaaatatataaa
tgtggtatgggtaaaggtcatatcactctcatgccacctcatccctgtct
cttcctttgtgcagtctctaactcatgacattactgaaatattcgaccct
tgttgatgaaaccacacttttaagccagtaaagctgagagcccagctagc
atcctcaactgaacaagcgcacaaccaggcgaagttgtgt
gaattcccccagatatgggccaggcctgactagagaaaaccttagagtca
gcacatccaagatggtggccctttgtgtatctggagttgaagaaggcctt
cccagagtttcaagccaacgttgttgacactaaacaggaagtgaagcttt
cagactgaacagctcaactaaatggaaaagcacgctcatcttacagagat
tatgacttggttagatgagatttgtatgtatgagggtaaaggaacaatgg
ctactttaatctaaggaagaactcacagctaatggttagagaaacacaaa
ataaaagacctagagctgagagagtccaactaggagaggagcactcagca
agctgcgaacagcatccaggagcatctgatagtgcaaagggcagggcagg
agctgctggagaaagctttattccttgctccttccatcatggcacagtga
aggagccagcaacaggtaacaccttcccccagtccagatggatgtttcat
ttgggtggcattgcgagcactttgtctatgttgtcctgagcccttcagtt
cccactcctgtatagttttccttgtctctacctgccacctttgcccagga
caccctcctctctgaggctaagtcttaattcatgagacagaaaagacagg
aacgagggcagatggaggaagctctgcctcagtctgcctctaggcaattg
gatcagacaaagaaaaggttatgttgcctctgggggaaaaagaataagca
cattgcatgtgtgtggctggtttgttacatctgttatggaatcaggaagc
ctcctgcttcatgttctgttggcgctagagtctgtgacatcagaataaag
acctctgagtctacttgttagcatcatactctacggacttataatatgca
gggggcacagtatagctcagccagcttctgtggccttacaaaagtcctca
gtcctcttatctactcattcacacagcaaatatttattgagtaccactat
ctttcagacactatcctaggttaaaatctataccgtgaagaatatacaag
ggctgctttgtgggtctaaaatttagtgactactgggacaatgataaaca
aataaaaactgtgtttatggccatgtagggaaatgatgccttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_56541952_56543066
seq2: B6Ng01-030A10.b_43_1132

seq1  GAATTCTTTTAGCATTATGAAGTTTATTTTTGTTTCTCCTTTAGAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGCATTATGAAGTTTATTTTTGTTTCTCCTTTAGAATCAA  50

seq1  GGTGAAATATCTCAAAGTCATCAATTTAGTAACAAAGATGGGATTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATATCTCAAAGTCATCAATTTAGTAACAAAGATGGGATTTAATT  100

seq1  TTATTATTATTATTTTTGTTGTTGTTGTTGTTCTTGTTGTTGTTGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTTTTGTTGTTGTTGTTGTTCTTGTTGTTGTTGCTTTC  150

seq1  TGCGATTTGTATGGAGCCAGGCAAGCAGGCAGGCAGGCAGGCTGCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATTTGTATGGAGCCAGGCAAGCAGGCAGGCAGGCAGGCTGCCAGGA  200

seq1  AAAGAGAATGGGATGCAGGTGCTATGGCACGTTTAGAGGTCAGAGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATGGGATGCAGGTGCTATGGCACGTTTAGAGGTCAGAGAATCA  250

seq1  CTTCCAGAAGTCAATTCTCCCCTCCCACCATAGGTTCTATGGATTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAGTCAATTCTCCCCTCCCACCATAGGTTCTATGGATTCAGCA  300

seq1  GGTTGTTGGGACTGCTCAGGAATCACTTGTGCCCAGTGAGCCATCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGGGACTGCTCAGGAATCACTTGTGCCCAGTGAGCCATCTCATC  350

seq1  AGCCCAAAGACAAGGCTTAAGCCCCCGTCTCCTAACCATAAACTTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAAGACAAGGCTTAAGCCCCCGTCTCCTAACCATAAACTTGGGGT  400

seq1  TCAGCTGCATGAATCAACCTGCTCAGTTGATAGTAATACATAATGTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCATGAATCAACCTGCTCAGTTGATAGTAATACATAATGTCTGA  450

seq1  TACCATGACTTCAAAGGAAAGCCATTGATGCCATCAGGTGTCACTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGACTTCAAAGGAAAGCCATTGATGCCATCAGGTGTCACTTTACC  500

seq1  ACAGGGACACAAAAGCTGTCATCCTGACCCAGTTTACTAATTCAATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACACAAAAGCTGTCATCCTGACCCAGTTTACTAATTCAATATAG  550

seq1  TTGGGAATTTTAGGCCTTGACTAATCTTCTGTCTTGGTGGTTTGTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATTTTAGGCCTTGACTAATCTTCTGTCTTGGTGGTTTGTATTAA  600

seq1  CTATTGTCTCTTTAAGGCACTAAAGCAAAAGAAATGAACATGAACTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTCTCTTTAAGGCACTAAAGCAAAAGAAATGAACATGAACTAGAC  650

seq1  TTAGGACTGTAGTCAACAGCAGAGAAAGTAAGAGGGCGCCCTTCTGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTGTAGTCAACAGCAGAGAAAGTAAGAGGGCGCCCTTCTGTGCT  700

seq1  TTCCTAAGTAACTAGAAAATGGGAAGTAGAAAAGGAATGAACTGTGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGTAACTAGAAAATGGGAAGTAGAAAAGGAATGAACTGTGGTAA  750

seq1  CCAGAATCTAGATCACAACTCCATTTCTGTCCCTAAAGGAAATTCCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTAGATCACAACTCCATTTCTGTCCCTAAAGGAAATTCCCATC  800

seq1  AAATGGTCCTCAGTTTTCCCATACTCAAAATTCAATTTCCCCACATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCCTCAGTTTTCCCATACTCAAAATTCAATTTCCCCACATGCAA  850

seq1  AATGAATCATCATCAACCTCATGAAAACTCCAAGAAATCAAATATATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGAATCATCATCAACCTCATGAAAACTCCAAGAAATCAAATATAT-AA  899

seq1  ATGTGGTATGGGTAAAAGGTCATATCACTCCTCATGCCACCTCATCCCTG  950
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  ATGTGGTATGGGT-AAAGGTCATATCACT-CTCATGCCACCTCATCCCTG  947

seq1  TCTCCTTCCTTTGTGGCCAGTCTCCCTAACTCAATTGACAATTAACTGGA  1000
      ||| |||||||||||  ||||||  ||||||||  |||||  | ||||  
seq2  TCT-CTTCCTTTGTG--CAGTCT--CTAACTCA--TGACA--TTACTG--  986

seq1  AATTATTCGAACCCTTGGTTGATGAAACCCACACTTTTATAGCCAGTAAA  1050
      || |||||| |||||| |||||||||| ||||||||||| ||||||||||
seq2  AAATATTCG-ACCCTT-GTTGATGAAA-CCACACTTTTA-AGCCAGTAAA  1032

seq1  AGCCTGAGAGCCCAAGCAGAGCATCCCTCAACTGACACAGCGCACAA-CA  1099
         |||||||||| |||  ||||| ||||||||||   ||||||||| ||
seq2  --GCTGAGAGCCC-AGC-TAGCAT-CCTCAACTGAACAAGCGCACAACCA  1077

seq1  GGCCAGAAGTTTGTGT  1115
      |||  |||| ||||||
seq2  GGC--GAAG-TTGTGT  1090

seq1: chr4_56602909_56604069
seq2: B6Ng01-030A10.g_67_1211 (reverse)

seq1  GTTATAGGCATCATTTTCCCTAACATTGGCCACTAAACACAGTTTTTATT  50
      |||| |||||||| ||||||| ||| |||||| ||||||||||||||| |
seq2  GTTA-AGGCATCA-TTTCCCT-ACA-TGGCCA-TAAACACAGTTTTTA-T  44

seq1  TTGTTTATTCATTGTCTCACGTAGTCCACTAAAATTTATGAACCACAAAG  100
      ||||||| |||||||| || ||||| ||||||| |||| || ||||||||
seq2  TTGTTTA-TCATTGTCCCA-GTAGT-CACTAAATTTTA-GACCCACAAAG  90

seq1  CAGGCCTTGTATATTCATCACCGTATAGATTCTTAACACCTAGGATAGTG  150
      ||| |||||||||||| |||| ||||||||| |||  |||||||||||||
seq2  CAGCCCTTGTATATTCTTCACGGTATAGATT-TTA--ACCTAGGATAGTG  137

seq1  TCTGAAAGATAGTTGGTACTCAATAAATATTTGCTGTGTGAATGAGTAGA  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGATAG-TGGTACTCAATAAATATTTGCTGTGTGAATGAGTAGA  186

seq1  TAAGAGGACTGAGGACTTTTGTAAGGCCAACAGAAGGCTGGCTGAGCTAT  250
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TAAGAGGACTGAGGACTTTTGTAAGGCC-ACAGAA-GCTGGCTGAGCTAT  234

seq1  ACTGTGCCCCCTGCATATTATAAGTCCGTAGAGTATGATGCTAACAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCCCCTGCATATTATAAGTCCGTAGAGTATGATGCTAACAAGTA  284

seq1  GACTCAGAGGTCTTTATTCTGATGTCACAGACTCTAGCGCCAACAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGGTCTTTATTCTGATGTCACAGACTCTAGCGCCAACAGAACA  334

seq1  TGAAGCAGGAGGCTTCCTGATTCCATAACAGATGTAACAAACCAGCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGAGGCTTCCTGATTCCATAACAGATGTAACAAACCAGCCACA  384

seq1  CACATGCAATGTGCTTATTCTTTTTCCCCCAGAGGCAACATAACCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAATGTGCTTATTCTTTTTCCCCCAGAGGCAACATAACCTTTTC  434

seq1  TTTGTCTGATCCAATTGCCTAGAGGCAGACTGAGGCAGAGCTTCCTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGATCCAATTGCCTAGAGGCAGACTGAGGCAGAGCTTCCTCCAT  484

seq1  CTGCCCTCGTTCCTGTCTTTTCTGTCTCATGAATTAAGACTTAGCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCGTTCCTGTCTTTTCTGTCTCATGAATTAAGACTTAGCCTCAG  534

seq1  AGAGGAGGGTGTCCTGGGCAAAGGTGGCAGGTAGAGACAAGGAAAACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGTGTCCTGGGCAAAGGTGGCAGGTAGAGACAAGGAAAACTAT  584

seq1  ACAGGAGTGGGAACTGAAGGGCTCAGGACAACATAGACAAAGTGCTCGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGGGAACTGAAGGGCTCAGGACAACATAGACAAAGTGCTCGCA  634

seq1  ATGCCACCCAAATGAAACATCCATCTGGACTGGGGGAAGGTGTTACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCCAAATGAAACATCCATCTGGACTGGGGGAAGGTGTTACCTGT  684

seq1  TGCTGGCTCCTTCACTGTGCCATGATGGAAGGAGCAAGGAATAAAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTCCTTCACTGTGCCATGATGGAAGGAGCAAGGAATAAAGCTTT  734

seq1  CTCCAGCAGCTCCTGCCCTGCCCTTTGCACTATCAGATGCTCCTGGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAGCTCCTGCCCTGCCCTTTGCACTATCAGATGCTCCTGGATGC  784

seq1  TGTTCGCAGCTTGCTGAGTGCTCCTCTCCTAGTTGGACTCTCTCAGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGCAGCTTGCTGAGTGCTCCTCTCCTAGTTGGACTCTCTCAGCTCT  834

seq1  AGGTCTTTTATTTTGTGTTTCTCTAACCATTAGCTGTGAGTTCTTCCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTTATTTTGTGTTTCTCTAACCATTAGCTGTGAGTTCTTCCTTA  884

seq1  GATTAAAGTAGCCATTGTTCCTTTACCCTCATACATACAAATCTCATCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGTAGCCATTGTTCCTTTACCCTCATACATACAAATCTCATCTA  934

seq1  ACCAAGTCATAATCTCTGTAAGATGAGCGTGCTTTTCCATTTAGTTGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCATAATCTCTGTAAGATGAGCGTGCTTTTCCATTTAGTTGAGC  984

seq1  TGTTCAGTCTGAAAGCTTCACTTCCTGTTTAGTGTCAACAACGTTGGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTCTGAAAGCTTCACTTCCTGTTTAGTGTCAACAACGTTGGCTT  1034

seq1  GAAACTCTGGGAAGGCCTTCTTCAACTCCAGATACACAAAGGGCCACCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTGGGAAGGCCTTCTTCAACTCCAGATACACAAAGGGCCACCAT  1084

seq1  CTTGGATGTGCTGACTCTAAGGTTTTCTCTAGTCAGGCCTGGCCCATATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGTGCTGACTCTAAGGTTTTCTCTAGTCAGGCCTGGCCCATATC  1134

seq1  TGGGGGAATTC  1161
      |||||||||||
seq2  TGGGGGAATTC  1145