BAC Information

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BAC

Clone NameB6Ng01-030E24
Chromosome4 (Build37)
Map Location 52,783,950 - 52,785,045
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
Downstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030E24.bB6Ng01-030E24.g
ACCDH860258DH860259
length1,086966
definitionDH860258|Mus musculus domesticus DNA, BAC clone: B6Ng01-030E24, 5' end.DH860259|Mus musculus domesticus DNA, BAC clone: B6Ng01-030E24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgcaggggatgagagccaggttaacaacagaagccctggtgc
cggaggaggaacttagctccctgttcttggctgacaggcgaatgagtatg
tgtgcttcccgggttttggtttctcttttctttttgataacagtggatgg
ctatggacaaggaggaagaagactgagaattcctctccttctccagttct
ggccacgtcagtaaaggaaccatgttcttctacgaagtcctgtgtctgtc
tctagttttgtaaggtgttggtcaatgaaccttcagttctgacgaaatca
tacgtttctgagaatggaaccctgccttctatcagccaatatcacatcaa
agttcttttttgtatcattggctctaccagaaggcaaaggtttatctttt
taaaaatttttattggctattttatttatttacttttcaaatattatccc
ccttctgggttttccctccacaacccccctatcccttcctccctcccctg
cctcgatgagggcactcctgcctcaccactctagcgtttccctatgctgg
ggcatcaagccttcacaggaccaagggcctcccctctcactgatgctggc
agtcctctgctacatatgcagctggagccatgggtccctccatgtgtatt
ctttgtttggtggtttagtccctaggagctctgtgggggtctagtttgtg
atattattgttcttccctatagggttgcaaaccgcttcattttcttcagt
ccttcccctaactccttgattgtgagacaaaggtttcttaatgttttact
ggttttgagtaaatgacttagtatgcaacttaaactttttggaagcgaat
gtaactagaatttttagggtgaaaccctcagctcctcgagtcccaacagc
taagttcttgctattggtcctattgtatcatgtaaaagatgaccatgatg
aaaaacagagaggtgtattattgatgtggctacatttagagaatatagtt
tctagtgggccagcgtaccaatataggtgtctggcttagttacaatatga
agtgctgttgcaccaaaggaactggcaaggactaat
gaattcagttttcaagcattttattgagtatttttgtattaatgttcatg
agtaaaattggtctgtaattttcttttactattgaatctttttgtgtttt
gggtatcagggtaactatgacctcataaaatgaatttgataattttcatt
ctgtttctattttgtggaataatttgaggaaagctatattagctcttctt
tgaaaatctgatagaattctgggctaaaaacatctggcattgggcttttg
tggttaggagacttctgatggttgtttctattttcttagaggttataggt
ctgttcacattgtttatcagatctctatttaactttggtaagtggtatct
atcaagaaaattgcccatttcttttgggatttccagtttttgtaaagcac
agggttttttgatgtatgctctaataagagagtctgttgctatatttcat
ttccaattttgttaatttggatattctctatctttcattagtttagataa
aagcttgtttatcttgctgatttttttcaaagaactaactcttgattctt
ttttttttttttttttttttttggatttctctccttttttaaaattttac
tgattttagcccctcagtttgattattttcttgccctttactcctcttgg
gtaaacttttttctttttgtttctagagcttctaggagtgctgttaagtg
ccaatatgagatgccccatatttctttttgtaggcacttagtgctacaaa
ctttcatcttggcattaacatgaaagcattgtgtcccatgtttggttatg
ctggcatcattttcaatggagcctgggaaatcttcattcttttttattct
gccttgactacagtcattcagtagagagtgttcagttccatgagtttagg
tgtaggttcgttattgaatgcagtttatcggggggctcgataggaatcca
ggtgggttatgtaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52783950_52785045
seq2: B6Ng01-030E24.b_42_1127 (reverse)

seq1  ATTATGTCCTTTGTCCAGTTCCTTTCTGGTGCAACAGACACCTCATATTG  50
      |||| ||||||   ||||||||||  ||||||||||| ||| ||||||| 
seq2  ATTA-GTCCTT--GCCAGTTCCTT--TGGTGCAACAG-CACTTCATATT-  43

seq1  GTAACCTAAAGCCAGACACCTCATATTGGTACGCTGGGGCCACTAGAAAC  100
      |||||   ||||||||||||| ||||||||||||| || |||||||||| 
seq2  GTAAC--TAAGCCAGACACCT-ATATTGGTACGCT-GGCCCACTAGAAA-  88

seq1  CTATATTCTTCCTAATGTAGCCACATCAATTATATCACCTCTCTGTTTTT  150
      |||||||| ||  ||||||||||||||||| ||| |||||||||||||||
seq2  CTATATTC-TCTAAATGTAGCCACATCAATAATA-CACCTCTCTGTTTTT  136

seq1  CATCATGGTTCATCTTTTACATGATACATTAGGACCAATAGC-AGAACTT  199
      |||||||| ||||||||||||||||||| ||||||||||||| |||||||
seq2  CATCATGG-TCATCTTTTACATGATACAATAGGACCAATAGCAAGAACTT  185

seq1  AGCTGTTGGGACTTCGA-GAGCTGAGGGTTTCACCAT-AAAATTCTAGTT  247
      |||||||||||| |||| ||||||||||||||||| | ||||||||||||
seq2  AGCTGTTGGGAC-TCGAGGAGCTGAGGGTTTCACCCTAAAAATTCTAGTT  234

seq1  ACATTCGCTTCCAAATAGTTT-AGTTGCATACTAAGTCATTTACTCAAAA  296
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  ACATTCGCTTCCAAAAAGTTTAAGTTGCATACTAAGTCATTTACTCAAAA  284

seq1  -CAGTAAAACATTAAGAAACCTTTGTCTCACAATCAAGGAGTTAGGGGAA  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAAACATTAAGAAACCTTTGTCTCACAATCAAGGAGTTAGGGGAA  334

seq1  GGACTGAAGAAAATGAAGCGGTTTGCAACCCTATA-GGAAGAACAATAAT  394
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGACTGAAGAAAATGAAGCGGTTTGCAACCCTATAGGGAAGAACAATAAT  384

seq1  ATCAACAAACTAGA-CCCCACAGAGCTCCTAGGGACTAAACCACCAAACA  443
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATC-ACAAACTAGACCCCCACAGAGCTCCTAGGGACTAAACCACCAAACA  433

seq1  AAGAATACACATGGAGGGACCCATGGCTCCAGCTGCATATGTAGCAGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACACATGGAGGGACCCATGGCTCCAGCTGCATATGTAGCAGAGG  483

seq1  ACTGCCAGCATCAGTGAGAGGGGAGGCCCTTGGTCCTGTGAAGGCTTGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGCATCAGTGAGAGGGGAGGCCCTTGGTCCTGTGAAGGCTTGAT  533

seq1  GCCCCAGCATAGGGAAACGCTAGAGTGGTGAGGCAGGAGTGCCCTCATCG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCATAGGGAAACGCTAGAGTGGTGAGGCAGGAGTGCCCTCATCG  583

seq1  AGGCAGGGGAGGGAGGAAGGGATAGGGGGGTTGTGGAGGGAAAACCCAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGAGGGAGGAAGGGATAGGGGGGTTGTGGAGGGAAAACCCAGA  633

seq1  AGGGGGATAATATTTGAAAAGTAAATAAATAAAATAGCCAATAAAAATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGATAATATTTGAAAAGTAAATAAATAAAATAGCCAATAAAAATTT  683

seq1  TTAAAAAGATAAACCTTTGCCTTCTGGTAGAGCCAATGATACAAAAAAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGATAAACCTTTGCCTTCTGGTAGAGCCAATGATACAAAAAAGA  733

seq1  ACTTTGATGTGATATTGGCTGATAGAAGGCAGGGTTCCATTCTCAGAAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATGTGATATTGGCTGATAGAAGGCAGGGTTCCATTCTCAGAAAC  783

seq1  GTATGATTTCGTCAGAACTGAAGGTTCATTGACCAACACCTTACAAAACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTTCGTCAGAACTGAAGGTTCATTGACCAACACCTTACAAAACT  833

seq1  AGAGACAGACACAGGACTTCGTAGAAGAACATGGTTCCTTTACTGACGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACACAGGACTTCGTAGAAGAACATGGTTCCTTTACTGACGTG  883

seq1  GCCAGAACTGGAGAAGGAGAGGAATTCTCAGTCTTCTTCCTCCTTGTCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACTGGAGAAGGAGAGGAATTCTCAGTCTTCTTCCTCCTTGTCCA  933

seq1  TAGCCATCCACTGTTATCAAAAAGAAAAGAGAAACCAAAACCCGGGAAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATCCACTGTTATCAAAAAGAAAAGAGAAACCAAAACCCGGGAAGC  983

seq1  ACACATACTCATTCGCCTGTCAGCCAAGAACAGGGAGCTAAGTTCCTCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTCATTCGCCTGTCAGCCAAGAACAGGGAGCTAAGTTCCTCCT  1033

seq1  CCGGCACCAGGGCTTCTGTTGTTAACCTGGCTCTCATCCCCTGCATGGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCACCAGGGCTTCTGTTGTTAACCTGGCTCTCATCCCCTGCATGGAA  1083

seq1  TTC  1096
      |||
seq2  TTC  1086