BAC Information

Click to search

BAC

Clone NameB6Ng01-030F14
Chromosome4 (Build37)
Map Location 145,888,346 - 145,889,517
singlet/doubletsinglet
Overlap geneRex2
Upstream geneTnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F14.bB6Ng01-030F14.g
ACCDH860286DH860287
length1,1341,166
definitionDH860286|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F14, 5' end.DH860287|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttggatcattattgtataggataaagaaaccatctacatatc
tttagtgtatcactacaagttagttcatcttgtagttctgcagagatctg
ctcaaccttgtgaactgattcctggtggtttttatatatgtttaatagtg
acaggaaaagcacattaagagcagcaatctttcctaaagtgattttctcc
agtaccttgcctactgaagctctttcataattttgctagcataaagtgaa
gtaatctcaggaagatcaccagtttgtcctctgatattaggacatattaa
tttgtcctttgatggctcctgacacctaagcttctcatggccgccatgcc
tcaagacctagatcaaaagcatgcgtcattccatgccaagttctaggtca
gatgcctgtgccatccagactcagatctggatcatgggtattccctctat
ttctggattgtaatcattttatatgtagtcaagttgacagccaggaatag
ccaaaacaataatacaccatttaaaacacagaaagtaaaacctcacatcg
gtatctcactttatgccaaaattatgtttgacaaaatgcaacaccccttt
ttcataagtcttggtgagagaagggatagagtgatcatatctaaacacaa
tataggttatatacagcaacccttaccaagtaccaaattaaacataaaga
aaattaaagcatttccactaaaattggggacaaggctgcccacttttccc
atatctcctcaatatgctatgtaaagttctagctagagcaatagtacagc
taaaggaaggcatcttggaactggaagagaagagggaatctggggggaga
gaaataatgggagtcaagacagtattctgatcaagattcaactttaatgt
ctgcaaacatgctttttaagaagagggggaggcctatcccagccaggcaa
agtccctttcagttgtcagtatcagcctttagtaggaacctgtgaaaatc
accagtttgtagctactctggcagatccagagacttgttcagcttcaggc
aggtacaggtgtggaacatcaagggaatgatgagaagcagccagcagggt
ggcacttctaattggaaaggtccaagtcagccct
gaattcttacaaatgtattgaatgtgacaaatgttttgcccagaaatcct
atcttgttcataatcacagaaatcatacattaaagaagccttacaaatgc
agtcaatgtgacaaatgattttcccacaaacttagtctgagaatgcacca
gagaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataa
atgctttactaataaaggcagactgagaattaatcagataatttatacat
ttaaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaa
catcagtctgacaaatcaacagatatttcaaacagtagagcaacattata
aatgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattc
actggagaattcttccaaaagggaaacttttcaaatacattgacggtttg
aatcctttattttggccaatctcttagaatgtaacagataatttatacag
gcaagaatcttaacaaatataatatatgctgaaatatctttgacttcatt
tcagtgcagaaaaaatatgtaaaaaaattttttatgggaaaaatagttct
cctggggaaatgtggcatatgttttacacgggtaatattcttttcaacag
tcagtgctctaaactagagaattattatgaatctgaaaacttttgaaaac
cttcatgcaatcttcaaatctaatgtcaactattatgctggcagtaactc
tgaatatatgataatgaagaaacattttcattaaacttttacttgttcac
cctcaaatattatatgatgaagtcagtgtgaaagccagaagaatatgatg
ttgtgcaacaattcatggagatagaatgatccattccagaaggaaactta
aagagtgtactatcgcttcaaatgtctaataaaactggcagcattttgta
ttttattcaaatgaagaattgaaccaaattatacttgatagagtattgac
aactgagccaccagatgcatgttcttatccttatatacacctacgatgtg
aagtgtgcttgagtatccagattcatatcttatcacgtcaatggacaaga
attatgtttccgttcaggaaagggactgactatgaacccttaggcctgtc
aacctcctcctcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145888346_145889517
seq2: B6Ng01-030F14.g_99_1234

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTCATAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGAGAATGCACCAGAGAATTCATACAGTAGAGAAAACTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200

seq1  TAATCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATG  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATCAGATAATTTATACATTTAAAAAAA-CCTTACAAGTATTTTGTATG  249

seq1  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  299

seq1  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACA  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAACA  349

seq1  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  399

seq1  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAA  450
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCAATCTCTTAGAA  449

seq1  TGTAATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  499

seq1  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAAAT  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAATT  549

seq1  TTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACAC  599

seq1  GGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATG  649

seq1  AATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAAT  700
      |||||||||||||||||||||||||||||||| ||||||||     ||||
seq2  AATCTGAAAACTTTTGAAAACCTTCATGCAATCTTCAAATC-----TAAT  694

seq1  GTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAGTGAAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAATGAAGAAACA  744

seq1  TTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTC  794

seq1  AGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATA  843

seq1  GAAATGATCCATTCCAAAAGGAAACTAAATAAAGTGTACTATCGCCTTCA  900
      | |||||||||||||| ||||||||| || | |||||||||||| |||| 
seq2  G-AATGATCCATTCCAGAAGGAAACTTAA-AGAGTGTACTATCG-CTTC-  889

seq1  AAATGTCTAATAAAACTGGCAGCATTTTGTATATTTAATTCAAATGAAGA  950
      |||||||||||||||||||||||||||||  ||||| |||||||||||| 
seq2  AAATGTCTAATAAAACTGGCAGCATTTTG--TATTTTATTCAAATGAAG-  936

seq1  AATTGACACAGATTGTAGTTGATAGTGTATTTGACAAACTGAGCCACCAA  1000
      ||||||  || ||| || ||||||| ||| ||||| |||||||||||| |
seq2  AATTGAACCAAATTATACTTGATAGAGTA-TTGAC-AACTGAGCCACC-A  983

seq1  GACTGCATGTTCTTAATCCTATAATATGCCTACAGATGTGAAGTGTGCTT  1050
      || ||||||||||| |||||   |||  ||||| |||||||||||||| |
seq2  GA-TGCATGTTCTT-ATCCTTATATACACCTAC-GATGTGAAGTGTGC-T  1029

seq1  TGAGTATCCAGTATTCATTATTCTTATCACGTCAATGTGACAAATGATTT  1100
      ||||||||||| ||||||   |||||||||||||||| |||||  || ||
seq2  TGAGTATCCAG-ATTCAT--ATCTTATCACGTCAATG-GACAA--GAATT  1073

seq1  ATTGGTTTCACGTTTCAGGATAGTGACTGACTATGAGTCCCTTATGCTCT  1150
      ||  ||||| || ||||||| || ||||||||||||  |||||| || ||
seq2  AT--GTTTC-CG-TTCAGGAAAGGGACTGACTATGA-ACCCTTAGGC-CT  1117

seq1  GTCAACATCTCCTTCCTCATTG  1172
      ||||||  |||| |||||||||
seq2  GTCAAC--CTCC-TCCTCATTG  1136