BAC Information

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BAC

Clone NameB6Ng01-030O03
Chromosome4 (Build37)
Map Location 117,479,189 - 117,601,251
singlet/doubletdoublet
Overlap genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn
Upstream geneToe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17
Downstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O03.bB6Ng01-030O03.g
ACCDH860655DH860656
length1,0011,070
definitionDH860655|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O03, 5' end.DH860656|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,479,189 - 117,480,187)(117,600,152 - 117,601,251)
sequence
gaattcttgatccccccctgctgtgactcgggtgggctgagtgtgcatat
ttgccaccatgcctggttttatgcagggctttgtgcgtgctaagtgtgat
ggccagtcttgtttctcaatgtggcacaagggggaagagggaccctcctt
tgaggaattgcctctatcagattgtcttgtggacatgtctgtggggcatt
ttcttgattgctagttatgcaagagggcccagtccactatgggcagtgct
atccctagacaggtgggcctggtctgtgtaagggaggtagttgtgctgcg
gtggtgacccacatgcttaatccagtacttgggggcagaggcaggatctc
tgtgggtttgaggccagcttgatctatacagaaagttccaggccagctag
gggtacatagtgacacctgtcttaaccgccacatccaactgcctgggaat
gggagttgggtatctaaccatgccagaggaagaaggccagaatgcagtgg
ccttcaaggttttactcagccccctgcttccgggttccagctttgaaatc
ccttcttcccccaagctgtttatctcaggaacagaaaaccaagctagaat
actagataagcactcttcccacagagccccacccagccccacccgttctg
tttcagagccaaagcctcagagtatacttgaccttgggagactgccaacc
tgagctaggctgcctgttcacaggcacgaggccctccgttccatctctag
taccacagatataatttaattaaaaatttgaaagaggactggagagatgg
cttggggttatacacactaaatgttcttccaaaggctccaagtttcattc
ccagcacctccatagtggctaagaaccatctgtagtttcagttccaagga
atatgactccctcttctggtctctgagggcacaagtatgcagtggtgtac
agacctacgtgcaggcaattctaatacacttaaagatgattgaatgaatg
c
gaattcttaaaagttctaggggtccaagagcagtggttcacaaagactgg
aggtgcgggctggggtcaggaaggatggtttatgggggaaactcctagga
gcaaggctagggggccagatccacaggaggcagatggtccaggcttgggc
cggatctcggagtggttcagccctctgagaccaggttggtgtgaaggact
agctggtccttctggcaatggctcagacctaaatgtgcagagcgtgtgca
aaagccccctccccttaaatccgcaggcttgacaagctctgccccctggt
ggccacaggaagccatggtccaggccctgtgttttcagaaggaccatcgc
ttccccagataataggcaagctcttgggagacatctgtgggcataagaga
gaattcaggtgacactgggtccagaaagaagattgcaagtcatcagataa
tccaagtgaccaactgacactcaaattcttcagggctctgcttcctcccc
caaggtatggagtgaacgctgagcatggagtggaaggaactcaagttact
actttctccaaccaccctggtaccttcagccctgaagtacagagcagaag
ggtcttagaagacaggaccacagctgtgtgagtctcccccctgaggcctt
agacgatctctgagctcagctgagctttgtttgcccatctggagaagtga
gccattgattgaccttgtggcatcgcgaagaacaggtcctgccaagcacc
taacacagagagcaaggttctccatcgcagctaccgctgctgagttgact
ctagctactccaacctcctgggtcgcttcgagagactggagtggaaggag
gataccccaaagataactaactcatctttcagttggaagctgccgcagga
agagggtgggaaacgggtccacgaaggcttctgatgggagcttctgagcg
aaagctatggactgggactgcaggctactgcatgtccactgcctcggcct
agtgcagtgagtcgctgctttcttgataaaagaagagacatagcttagcg
caggatcgattgaaagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_117479189_117480187
seq2: B6Ng01-030O03.b_44_1043

seq1  GAATTCTTGATCCCCCCCTGCTGTGACTCGGGTGGGCTGAGTGTGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCCCCCCCTGCTGTGACTCGGGTGGGCTGAGTGTGCATAT  50

seq1  TTGCCACCATGCCTGGTTTTATGCAGGGCTTTGTGCGTGCTAAGTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCATGCCTGGTTTTATGCAGGGCTTTGTGCGTGCTAAGTGTGAT  100

seq1  GGCCAGTCTTGTTTCTCAATGTGGCACAAGGGGGAAGAGGGACCCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCTTGTTTCTCAATGTGGCACAAGGGGGAAGAGGGACCCTCCTT  150

seq1  TGAGGAATTGCCTCTATCAGATTGTCTTGTGGACATGTCTGTGGGGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATTGCCTCTATCAGATTGTCTTGTGGACATGTCTGTGGGGCATT  200

seq1  TTCTTGATTGCTAGTTATGCAAGAGGGCCCAGTCCACTATGGGCAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTGCTAGTTATGCAAGAGGGCCCAGTCCACTATGGGCAGTGCT  250

seq1  ATCCCTAGACAGGTGGGCCTGGTCTGTGTAAGGGAGGTAGTTGTGCTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGACAGGTGGGCCTGGTCTGTGTAAGGGAGGTAGTTGTGCTGCG  300

seq1  GTGGTGACCCACATGCTTAATCCAGTACTTGGGGGCAGAGGCAGGATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACCCACATGCTTAATCCAGTACTTGGGGGCAGAGGCAGGATCTC  350

seq1  TGTGGGTTTGAGGCCAGCTTGATCTATACAGAAAGTTCCAGGCCAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTGAGGCCAGCTTGATCTATACAGAAAGTTCCAGGCCAGCTAG  400

seq1  GGGTACATAGTGACACCTGTCTTAACCGCCACATCCAACTGCCTGGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATAGTGACACCTGTCTTAACCGCCACATCCAACTGCCTGGGAAT  450

seq1  GGGAGTTGGGTATCTAACCATGCCAGAGGAAGAAGGCCAGAATGCAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGGTATCTAACCATGCCAGAGGAAGAAGGCCAGAATGCAGTGG  500

seq1  CCTTCAAGGTTTTACTCAGCCCCCTGCTTCCGGGTTCCAGCTTTGAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGGTTTTACTCAGCCCCCTGCTTCCGGGTTCCAGCTTTGAAATC  550

seq1  CCTTCTTCCCCCAAGCTGTTTATCTCAGGAACAGAAAACCAAGCTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCCCCAAGCTGTTTATCTCAGGAACAGAAAACCAAGCTAGAAT  600

seq1  ACTAGATAAGCACTCTTCCCACAGAGCCCCACCCAGCCCCACCCGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAAGCACTCTTCCCACAGAGCCCCACCCAGCCCCACCCGTTCTG  650

seq1  TTTCAGAGCCAAAGCCTCAGAGTATACTTGACCTTGGGAGACTGCCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGCCAAAGCCTCAGAGTATACTTGACCTTGGGAGACTGCCAACC  700

seq1  TGAGCTAGGCTGCCTGTTCACAGGCACGAGGCCCTCCGTTCCATCTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGGCTGCCTGTTCACAGGCACGAGGCCCTCCGTTCCATCTCTAG  750

seq1  TACCACAGATATAATTTAATTAAAAATTTGAAAGAGGACTGGAGAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGATATAATTTAATTAAAAATTTGAAAGAGGACTGGAGAGATGG  800

seq1  CTTGGGGGTTATACACACTAAATGTTCTTCCAGAGGCTCCAAGTTTCATT  850
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTT-GGGGTTATACACACTAAATGTTCTTCCAAAGGCTCCAAGTTTCATT  849

seq1  CCCAGCACCTCCATAGTGGCTAAGAACCATCTGTAGTTTCAGTTCCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCTCCATAGTGGCTAAGAACCATCTGTAGTTTCAGTTCCAAGG  899

seq1  AATATGACTCCCTCTTCTGGTCTCTGAGGGCACCAGGTATGCAAGTGGTG  950
      |||||||||||||||||||||||||||||||| || |||||| |||||||
seq2  AATATGACTCCCTCTTCTGGTCTCTGAGGGCA-CAAGTATGC-AGTGGTG  947

seq1  TACAGACATACGTGCAGGCAAAATTCTAATACACATAAA------AGAAT  994
      ||||||| |||||||||||  ||||||||||||| ||||       ||||
seq2  TACAGACCTACGTGCAGGC--AATTCTAATACACTTAAAGATGATTGAAT  995

seq1  GAATG  999
      |||||
seq2  GAATG  1000

seq1: chr4_117600152_117601251
seq2: B6Ng01-030O03.g_68_1137 (reverse)

seq1  TCCCCTTTCATATCTGATCCCTGCGGCCCTAAGCTATGTCCTACTCTCTT  50
      |||||||||| ||| ||| ||||||   ||||||||||      ||||||
seq2  TCCCCTTTCA-ATC-GAT-CCTGCG---CTAAGCTATG------TCTCTT  38

seq1  TTTTTCCAAGGAAAGCCAGCGACTCACCTGCCACCTAGGCCGGAGGCAGT  100
       ||||   | ||||| |||||||||| ||||   ||||||| ||||||||
seq2  CTTTTATCAAGAAAG-CAGCGACTCA-CTGC--ACTAGGCC-GAGGCAGT  83

seq1  GGGACAATGCAGTAGGCTCTGCAAGTCCCAGTTCCATAGCTTTCGGCTCC  150
       |||| |||||||||   |||| |||||||| |||||||||||| ||| |
seq2  -GGAC-ATGCAGTAG--CCTGC-AGTCCCAG-TCCATAGCTTTC-GCT-C  125

seq1  AGAAGCTCCCATCAGAAGCCTTCGTGGACCCGTTTCCCCACCCTCTTCCT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAAGCTCCCATCAGAAGCCTTCGTGGACCCGTTT-CCCACCCTCTTCCT  174

seq1  GCGGCAGCTTGCAAACTGAAAGATGAGTTAGTTATCCTTTGGGGTATTCC  250
      |||||||||| | |||||||||||||||||||||| |||||||||| |||
seq2  GCGGCAGCTT-CCAACTGAAAGATGAGTTAGTTAT-CTTTGGGGTA-TCC  221

seq1  TCCTTCCACTCCAGTCTCTCGAAGCGACCCAGGAGGTTGGAGTAGCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACTCCAGTCTCTCGAAGCGACCCAGGAGGTTGGAGTAGCTAGA  271

seq1  GTCAACTCAGCAGCGGTAGCTGCGATGGAGAACCTTGCTCTCTGTGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCAGCAGCGGTAGCTGCGATGGAGAACCTTGCTCTCTGTGTTAG  321

seq1  GTGCTTGGCAGGACCTGTTCCTTCGCGATGCCACAAGGTCAATCAATGGC  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGCTTGGCAGGACCTGTT-CTTCGCGATGCCACAAGGTCAATCAATGGC  370

seq1  TCACTTCTCCAGATGGGCAAACAAAGCTCAGCTGAGCTCAGAGATCGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCCAGATGGGCAAACAAAGCTCAGCTGAGCTCAGAGATCGTCT  420

seq1  AAGGCCTCAGGGGGGAGACTCACACAGCTGTGGTCCTGTCTTCTAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCAGGGGGGAGACTCACACAGCTGTGGTCCTGTCTTCTAAGACC  470

seq1  CTTCTGCTCTGTACTTCAGGGCTGAAGGTACCAGGGTGGTTGGAGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCTGTACTTCAGGGCTGAAGGTACCAGGGTGGTTGGAGAAAGT  520

seq1  AGTAACTTGAGTTCCTTCCACTCCATGCTCAGCGTTCACTCCATACCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTGAGTTCCTTCCACTCCATGCTCAGCGTTCACTCCATACCTTG  570

seq1  GGGGAGGAAGCAGAGCCCTGAAGAATTTGAGTGTCAGTTGGTCACTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAGCAGAGCCCTGAAGAATTTGAGTGTCAGTTGGTCACTTGGA  620

seq1  TTATCTGATGACTTGCAATCTTCTTTCTGGACCCAGTGTCACCTGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGATGACTTGCAATCTTCTTTCTGGACCCAGTGTCACCTGAATTC  670

seq1  TCTCTTATGCCCACAGATGTCTCCCAAGAGCTTGCCTATTATCTGGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATGCCCACAGATGTCTCCCAAGAGCTTGCCTATTATCTGGGGAA  720

seq1  GCGATGGTCCTTCTGAAAACACAGGGCCTGGACCATGGCTTCCTGTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGTCCTTCTGAAAACACAGGGCCTGGACCATGGCTTCCTGTGGCC  770

seq1  ACCAGGGGGCAGAGCTTGTCAAGCCTGCGGATTTAAGGGGAGGGGGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGGCAGAGCTTGTCAAGCCTGCGGATTTAAGGGGAGGGGGCTTT  820

seq1  TGCACACGCTCTGCACATTTAGGTCTGAGCCATTGCCAGAAGGACCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGCTCTGCACATTTAGGTCTGAGCCATTGCCAGAAGGACCAGCT  870

seq1  AGTCCTTCACACCAACCTGGTCTCAGAGGGCTGAACCACTCCGAGATCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCACACCAACCTGGTCTCAGAGGGCTGAACCACTCCGAGATCCG  920

seq1  GCCCAAGCCTGGACCATCTGCCTCCTGTGGATCTGGCCCCCTAGCCTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCCTGGACCATCTGCCTCCTGTGGATCTGGCCCCCTAGCCTTGC  970

seq1  TCCTAGGAGTTTCCCCCATAAACCATCCTTCCTGACCCCAGCCCGCACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAGTTTCCCCCATAAACCATCCTTCCTGACCCCAGCCCGCACCT  1020

seq1  CCAGTCTTTGTGAACCACTGCTCTTGGACCCCTAGAACTTTTAAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTTGTGAACCACTGCTCTTGGACCCCTAGAACTTTTAAGAATTC  1070