BAC Information

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BAC

Clone NameB6Ng01-030O06
Chromosome4 (Build37)
Map Location 91,857,572 - 91,990,773
singlet/doubletdoublet
Overlap geneLOC68280
Upstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik
Downstream geneLOC620269, LOC384125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O06.bB6Ng01-030O06.g
ACCDH860661DH860662
length816987
definitionDH860661|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O06, 5' end.DH860662|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,989,958 - 91,990,773)(91,857,572 - 91,858,587)
sequence
gaattctgaaaatgtaattttaaagactgttgacattcattgggtattat
gaaaatcattctagttaatacattgggcatttaattagcaatacttcaga
gttaggtaagaggtctgtaatggataactgactttgaaatagattttatt
attggaaatatcatgaaacatattcagaaatgaatcagtaaattaataat
gactttctaggaaaacatccatagaagaggaggaagaggaaaatatccta
aagactactgaggtcattgaaacataattaaaaagtaaaaaataataggt
caggatttaataggtcagaatttcatcttcaaaacttgtcagcacaaagt
ccatttcttaactattatgcacatcctattttaccttcctaattgacaga
tatgcctttctaatttacagatatgaccaaatgtgaactatcaataaaaa
tacaaccagcaatatattttgcctaagttgtattccattatattttatga
agatagtgtagagagtgtatgtctgctattgtgtcttattatatgtgagt
gatggttctatgagattaaaagaaattgggtctcacttaactataattga
atcttgaaagatccccttcccaagcttagcattcctagaaggagagctcc
atagcgtaatttgaaaggagaaacaccagttctcagcacaggtacaatct
caagacctgcagatcttttgacattgtgtgagtgtcctaaaaacatctct
gaaattggccaatatgtcctatcattttcattatgtgttagtgtgtatgt
gtatgtatatgtgtgt
gaattctaagtctagaaaaaagatttccgtaagtccgttgtgtgaactgg
ttaaaacatttgtaaccttactgccatgcatggtacctctgctctccttg
gagacctcggaagctgcttggccgacgccatccttctgagcccttttctt
tgcttttggccttggggggaggcagtcttcgtcctcggcgctgcacctct
ccctcttccctgccctggcttcaggtaagctggatgcttccaccttgtcc
tgcttcttctttttctttgcaggttgctttggagcttccggggtttctgc
ttcagagccctcagaggccttccttggtctcttcctggctttacacacgc
ccgagctgctgctgtccacggccgactctttggcctgcacactctcttcc
ttctttattctgccttttttctttttcttctttttcttctcttctgtaac
aacatagttttattatttacagtcattagtttattgtttacttggccact
ctaagtaagcactcaccagctactcgtaaggaagggatgggcttgttttt
cactgtcttgggaaatataccaggctttctaggtgcttcttctggtgggt
tgttcagaaactgaaaagattgattgcagaatttgttactcttgctaacc
ctgtgctttttctttatttttctttacttttcaggtcccacagaagtact
tacctcaatggcttttgctgcttgctcttttgtttcaaattccacaaagg
caaatcccttaggatccccagtagacttgtaatgtggaatacttatgtaa
accacattgccacatttcccaaatactctctcaatccagctatgagtaca
tttttggggagcactcctgtaataatcatgtatgacattttaaagtctac
atttacataaataatgattataataatgactagatcaaaaaaaaaagagc
tgtttttgctccacattatttttgttatcttgtcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91989958_91990773
seq2: B6Ng01-030O06.b_47_862 (reverse)

seq1  ACACACATATACATACACATACACACTAACACATAATGAAAATGATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATACATACACATACACACTAACACATAATGAAAATGATAGGA  50

seq1  CATATTGGCCAATTTCAGAGATGTTTTTAGGACACTCACACAATGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGCCAATTTCAGAGATGTTTTTAGGACACTCACACAATGTCAAA  100

seq1  AGATCTGCAGGTCTTGAGATTGTACCTGTGCTGAGAACTGGTGTTTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCAGGTCTTGAGATTGTACCTGTGCTGAGAACTGGTGTTTCTCC  150

seq1  TTTCAAATTACGCTATGGAGCTCTCCTTCTAGGAATGCTAAGCTTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTACGCTATGGAGCTCTCCTTCTAGGAATGCTAAGCTTGGGAA  200

seq1  GGGGATCTTTCAAGATTCAATTATAGTTAAGTGAGACCCAATTTCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCTTTCAAGATTCAATTATAGTTAAGTGAGACCCAATTTCTTTTA  250

seq1  ATCTCATAGAACCATCACTCACATATAATAAGACACAATAGCAGACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAGAACCATCACTCACATATAATAAGACACAATAGCAGACATAC  300

seq1  ACTCTCTACACTATCTTCATAAAATATAATGGAATACAACTTAGGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTACACTATCTTCATAAAATATAATGGAATACAACTTAGGCAAAA  350

seq1  TATATTGCTGGTTGTATTTTTATTGATAGTTCACATTTGGTCATATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCTGGTTGTATTTTTATTGATAGTTCACATTTGGTCATATCTGT  400

seq1  AAATTAGAAAGGCATATCTGTCAATTAGGAAGGTAAAATAGGATGTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAAAGGCATATCTGTCAATTAGGAAGGTAAAATAGGATGTGCAT  450

seq1  AATAGTTAAGAAATGGACTTTGTGCTGACAAGTTTTGAAGATGAAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTAAGAAATGGACTTTGTGCTGACAAGTTTTGAAGATGAAATTCT  500

seq1  GACCTATTAAATCCTGACCTATTATTTTTTACTTTTTAATTATGTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATTAAATCCTGACCTATTATTTTTTACTTTTTAATTATGTTTCAA  550

seq1  TGACCTCAGTAGTCTTTAGGATATTTTCCTCTTCCTCCTCTTCTATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCAGTAGTCTTTAGGATATTTTCCTCTTCCTCCTCTTCTATGGAT  600

seq1  GTTTTCCTAGAAAGTCATTATTAATTTACTGATTCATTTCTGAATATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTAGAAAGTCATTATTAATTTACTGATTCATTTCTGAATATGTT  650

seq1  TCATGATATTTCCAATAATAAAATCTATTTCAAAGTCAGTTATCCATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATTTCCAATAATAAAATCTATTTCAAAGTCAGTTATCCATTAC  700

seq1  AGACCTCTTACCTAACTCTGAAGTATTGCTAATTAAATGCCCAATGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTTACCTAACTCTGAAGTATTGCTAATTAAATGCCCAATGTATT  750

seq1  AACTAGAATGATTTTCATAATACCCAATGAATGTCAACAGTCTTTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAATGATTTTCATAATACCCAATGAATGTCAACAGTCTTTAAAAT  800

seq1  TACATTTTCAGAATTC  816
      ||||||||||||||||
seq2  TACATTTTCAGAATTC  816

seq1: chr4_91857572_91858587
seq2: B6Ng01-030O06.g_69_1055

seq1  GAATTCTAAGTCTAGAAAAAAGATTTCCGTAAGTCCGTTGTGTGAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTCTAGAAAAAAGATTTCCGTAAGTCCGTTGTGTGAACTGG  50

seq1  TTAAAACATTTGTAACCTTACTGCCATGCATGGTACCTCTGCTCTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATTTGTAACCTTACTGCCATGCATGGTACCTCTGCTCTCCTTG  100

seq1  GAGACCTCGGAAGCTGCTTGGCCGACGCCATCCTTCTGAGCCCTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCGGAAGCTGCTTGGCCGACGCCATCCTTCTGAGCCCTTTTCTT  150

seq1  TGCTTTTGGCCTTGGGGGGAGGCAGTCTTCGTCCTCGGCGCTGCACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGGCCTTGGGGGGAGGCAGTCTTCGTCCTCGGCGCTGCACCTCT  200

seq1  CCCTCTTCCCTGCCCTGGCTTCAGGTAAGCTGGATGCTTCCACCTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCCTGCCCTGGCTTCAGGTAAGCTGGATGCTTCCACCTTGTCC  250

seq1  TGCTTCTTCTTTTTCTTTGCAGGTTGCTTTGGAGCTTCCGGGGTTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCTTTTTCTTTGCAGGTTGCTTTGGAGCTTCCGGGGTTTCTGC  300

seq1  TTCAGAGCCCTCAGAGGCCTTCCTTGGTCTCTTCCTGGCTTTACACACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCCCTCAGAGGCCTTCCTTGGTCTCTTCCTGGCTTTACACACGC  350

seq1  CCGAGCTGCTGCTGTCCACGGCCGACTCTTTGGCCTGCACACTCTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTGCTGCTGTCCACGGCCGACTCTTTGGCCTGCACACTCTCTTCC  400

seq1  TTCTTTATTCTGCCTTTTTTCTTTTTCTTCTTTTTCTTCTCTTCTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTCTGCCTTTTTTCTTTTTCTTCTTTTTCTTCTCTTCTGTAAC  450

seq1  AACATAGTTTTATTATTTACAGTCATTAGTTTATTGTTTACTTGGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTTTTATTATTTACAGTCATTAGTTTATTGTTTACTTGGCCACT  500

seq1  CTAAGTAAGCACTCACCAGCTACTCGTAAGGAAGGGATGGGCTTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAAGCACTCACCAGCTACTCGTAAGGAAGGGATGGGCTTGTTTTT  550

seq1  CACTGTCTTGGGAAATATACCAGGCTTTCTAGGTGCTTCTTCTGGTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTTGGGAAATATACCAGGCTTTCTAGGTGCTTCTTCTGGTGGGT  600

seq1  TGTTCAGAAACTGAAAAGATTGATTGCAGAATTTGTTACTCTTGCTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAACTGAAAAGATTGATTGCAGAATTTGTTACTCTTGCTAACC  650

seq1  CTGTGCTTTTTCTTTATTTTTCTTTACTTTTCAGGGTCCCACAGAAGTAC  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTGCTTTTTCTTTATTTTTCTTTACTTTTCA-GGTCCCACAGAAGTAC  699

seq1  TTACCTCAATGGCTTTTGCTGCTTGCTCTTTTGTTTCAAATTCCACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCAATGGCTTTTGCTGCTTGCTCTTTTGTTTCAAATTCCACAAAG  749

seq1  GCAAATCCCTTAGGATCCCCAGTAGACTTGTAATGTGGAATACTTATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCCTTAGGATCCCCAGTAGACTTGTAATGTGGAATACTTATGTA  799

seq1  AACCACATTGCCACATTTCCCAAATACTCTCTCAATCCAGCTATGAGTAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACCACATTGCCACATTTCCCAAATACTCTCTCAATCCAGCTATGAGT-A  848

seq1  CATTTTTGGGGAGCAACTCCTGTAATAAATCATGGTATGAACATTTTAAA  900
      |||||||||||||| ||||||||||| |||||| ||||| ||||||||||
seq2  CATTTTTGGGGAGC-ACTCCTGTAAT-AATCAT-GTATG-ACATTTTAAA  894

seq1  GTTCCTACATTTTACCAATAAATAAATGAATTATAAATAAATGAACTAGA  950
      ||  ||||| |||||  |||||| |||| |||||||   |||| ||||| 
seq2  GT--CTACA-TTTAC--ATAAAT-AATG-ATTATAA--TAATG-ACTAG-  933

seq1  ATCAAAAAAAAAAAAAGAAGCTGGTTTTTTTGCCTTCCCACAATTATTTT  1000
      |||||||||||||     |||||   |||||||    |||| ||||||||
seq2  ATCAAAAAAAAAA----GAGCTG---TTTTTGC---TCCAC-ATTATTTT  972

seq1  TGTTATCTTTGTCAAA  1016
      ||||||| ||||||||
seq2  TGTTATC-TTGTCAAA  987