BAC Information

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BAC

Clone NameB6Ng01-031D08
Chromosome6 (Build37)4 (Build37)
Map Location 82,164,373 - 82,164,8265,201,590 - 5,202,678
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166
Downstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D08.bB6Ng01-031D08.g
ACCDH860891DH860892
length8361,079
definitionDH860891|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D08, 5' end.DH860892|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,164,373 - 82,164,826)(5,201,590 - 5,202,678)
sequence
gaattcagagctgtgagatttcctcttagccctactttcattgtgtccca
taagtttgaggatgttgtgccttccttttcattaaattctaaagtcttta
atttctttccttatttcttccttgaccaagttctcattgagtaaggcatt
gttcaacttccttctgtatatgggctttctgttgtttttgctgccattga
ataccaatcttagtcagtggtgatctgtagggtgcatgtgattatttcaa
tcttcttgtatctgttgaggtctgttttgtgactgattatatggtcagtt
ttctgagaaggtaccatgacatgctgagaacaaggtatattcttttgttt
tagaataaaatgctttatagatatcagttaaattcatttggaccattact
tctgttagtttcactgtgtctccatttagtttgtgtttccatgatctgtc
cactgatgagaggaggtgtttaagtctcccactattattatgtgaggtgc
attgtgtgctttgagctttagtaaagtttcttttatgaatgtgggtgccc
ttgtatagatgttcagaattgagagtccttggtagacttttactttgatg
agtatgaaatattgttccttatcctttctgatgacttttggttgaaagtc
aactttatttgatattagaatggctactccagtttgtttcttggaacaat
ttgcttgaaaaattgttctccagccctttactctgaggaattgattgtct
ttgacaatgaggtgagtttcctgtatgtaacaaaatgctggatcctgttt
acatagctagtctgttagtctatgtcttttttgggg
gaattcttttttgagaaatcacccagtctacaactttatattagagaacc
cagatcacaatagggcaatgaagaagaactaaggtgcagagatttggggg
tgctggtgaattaccaaggataactgttctctttgtgactaaaatttgcc
tagaaagtttgtcacttgttgactgcaggggctcttctctggaaacttga
gtcattagggctggattgctgtaggtagcactgcaggtaactctcactga
gttttccttctggcaattctatcagaagtcctagccctaacacagacaat
atgggctgaaatgagctgagactgcacaattgcttgggaccactgaagag
ctctggatctctgtaaaggatgttgtagctgggagccactgtagattgta
agaaggaaaactgagaccaggtttagaacttaaaccttggtaatgatgat
ttgcagaaggcctgaacacaaagtgtgggcaaagcagtctctgaaatggg
ttgaagttttaaaataacaatgtccacaagagtgtaacagagatgagaag
ggtggtgccgaagtcaaatgatatctcctgttttcatcaataagtctcgg
caacccctctatagatgctttcaccaattgaatgcatgtaataaagtttc
ttactgcctgacataattttgcattctttaattctgcacacctttactgt
aattctattccagctcaaattctattctcatgactgtctaactctttact
ctgatgctatgacactcagcagtaagtgatattgtgaatgattttatgta
taacttaggaattggcagagaaaaataactacctaactgctggcaatgcc
tatatttggccttcatctgtgtctgtagccttggctaggtaggagcttac
tatggctatcagctgctgtacatatggtgctgagactatggtcatgtgct
ctatttttggctagatgagatattgatagcatgaagaggataaataagtc
atttgctgtacatgtggggctgcttcatccacagtttacaattatcccaa
ttctcaaaccaggcttggtgtgagctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82164373_82164826
seq2: B6Ng01-031D08.b_441_879 (reverse)

seq1  CCCCAATAAAAAGACATAGACTAACAAACTGGCTACACAATCAAGATCCA  50
      |||||  ||||||||||||||||||| ||| ||||   || || ||||||
seq2  CCCCA--AAAAAGACATAGACTAACAGACTAGCTATGTAAACAGGATCCA  48

seq1  ACACTTTGCTGTTTACAGGAGACACATCTCAGAGAAAAAGATAGACACTA  100
       || |||| |   ||||||| || || ||||  |  ||||| |  || | 
seq2  GCATTTTGTTACATACAGGAAACTCACCTCATTGTCAAAGACAATCAATT  98

seq1  CCTCAGAATAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGA  150
      ||||||| |||| ||||||| ||||||||| ||||||||| ||   ||||
seq2  CCTCAGAGTAAAGGGCTGGAGAACAATTTTTCAAGCAAATTGTTCCAAGA  148

seq1  AACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCC  200
      ||||| ||||||||||||| ||||||||  ||||  ||||||| ||||| 
seq2  AACAAACTGGAGTAGCCATTCTAATATCAAATAAAGTTGACTTTCAACCA  198

seq1  AAAGTCATCAAAAAAGGCAAGGAGGGGCACTTCGTTCTCATCAAAGGTAA  250
      |||||||||| ||| |  |||||     | ||| | ||||||||||  ||
seq2  AAAGTCATCAGAAAGGATAAGGAACAATATTTCATACTCATCAAAGTAAA  248

seq1  AATCCTCCAAGAGGAACTCTCAATTTTGAATATCTATGCTCCAAATACAA  300
      | ||  ||||   | |||||||||| |||| ||||         ||||||
seq2  AGTCTACCAA---GGACTCTCAATTCTGAACATCT---------ATACAA  286

seq1  GGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATT  350
      ||||| |||||||||| |||||||||||| |||||||||||||||||| |
seq2  GGGCACCCACATTCATAAAAGAAACTTTACTAAAGCTCAAAGCACACAAT  336

seq1  GCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAAT  400
      |||||||||| |||||||||||||||||| ||||| |  || ||| || |
seq2  GCACCTCACATAATAATAGTGGGAGACTTAAACAC-CTCCTCTCATCAGT  385

seq1  GGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAG  450
      |||||||||||||||||| ||||||||  | |||||| ||||||||||||
seq2  GGACAGATCATGGAAACACAAACTAAATGGAGACACAGTGAAACTAACAG  435

seq1  AAGT  454
      ||||
seq2  AAGT  439

seq1: chr4_5201590_5202678
seq2: B6Ng01-031D08.g_68_1146

seq1  GAATTCTTTTTTGAGAAATCACCCAGTCTACAACTTTATATTAGAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTGAGAAATCACCCAGTCTACAACTTTATATTAGAGAACC  50

seq1  CAGATCACAATAGGGCAATGAAGAAGAACTAAGGTGCAGAGATTTGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACAATAGGGCAATGAAGAAGAACTAAGGTGCAGAGATTTGGGGG  100

seq1  TGCTGGTGAATTACCAAGGATAACTGTTCTCTTTGTGACTAAAATTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGAATTACCAAGGATAACTGTTCTCTTTGTGACTAAAATTTGCC  150

seq1  TAGAAAGTTTGTCACTTGTTGACTGCAGGGGCTCTTCTCTGGAAACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTTGTCACTTGTTGACTGCAGGGGCTCTTCTCTGGAAACTTGA  200

seq1  GTCATTAGGGCTGGATTGCTGTAGGTAGCACTGCAGGTAACTCTCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGGGCTGGATTGCTGTAGGTAGCACTGCAGGTAACTCTCACTGA  250

seq1  GTTTTCCTTCTGGCAATTCTATCAGAAGTCCTAGCCCTAACACAGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTCTGGCAATTCTATCAGAAGTCCTAGCCCTAACACAGACAAT  300

seq1  ATGGGCTGAAATGAGCTGAGACTGCACAATTGCTTGGGACCACTGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGAAATGAGCTGAGACTGCACAATTGCTTGGGACCACTGAAGAG  350

seq1  CTCTGGATCTCTGTAAAGGATGTTGTAGCTGGGAGCCACTGTAGATTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATCTCTGTAAAGGATGTTGTAGCTGGGAGCCACTGTAGATTGTA  400

seq1  AGAAGGAAAACTGAGACCAGGTTTAGAACTTAAACCTTGGTAATGATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAACTGAGACCAGGTTTAGAACTTAAACCTTGGTAATGATGAT  450

seq1  TTGCAGAAGGCCTGAACACAAAGTGTGGGCAAAGCAGTCTCTGAAATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAGGCCTGAACACAAAGTGTGGGCAAAGCAGTCTCTGAAATGGG  500

seq1  TTGAAGTTTTAAAATAACAATGTCCACAAGAGTGTAACAGAGATGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTTTAAAATAACAATGTCCACAAGAGTGTAACAGAGATGAGAAG  550

seq1  GGTGGTGCCGAAGTCAAATGATATCTCCTGTTTTCATCAATAAGTCTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCCGAAGTCAAATGATATCTCCTGTTTTCATCAATAAGTCTCGG  600

seq1  CAACCCCTCTATAGATGCTTTCACCAATTGAATGCATGTAATAAAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTCTATAGATGCTTTCACCAATTGAATGCATGTAATAAAGTTTC  650

seq1  TTACTGCCTGACATAATTTTGCATTCTTTAATTCTGCACACCTTTACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCTGACATAATTTTGCATTCTTTAATTCTGCACACCTTTACTGT  700

seq1  AATTCTATTCCAGCTCAAATTCTATTCTCATGACTGTCTAACTCTTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTCCAGCTCAAATTCTATTCTCATGACTGTCTAACTCTTTACT  750

seq1  CTGATGCTATGACACTCAGCAGTAAGTGATATTGTGAATGATTTTATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTATGACACTCAGCAGTAAGTGATATTGTGAATGATTTTATGTA  800

seq1  TAACTTAGGAATTGGCAGAGAAAAATAACTACCTAACTGCTGGCAATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGGAATTGGCAGAGAAAAATAACTACCTAACTGCTGGCAATGCC  850

seq1  TATATTTGGCCTTCATCTGTGTCTGTAGCCTTGGCTAGGTAGGAGCTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGGCCTTCATCTGTGTCTGTAGCCTTGGCTAGGTAGGAGCTTAC  900

seq1  TATGGCTATCAGGCTGGCTGTTAACATATGGTGCTGAGACTATGGTCATG  950
      ||||||||||| ||| |||||  |||||||||||||||||||||||||||
seq2  TATGGCTATCA-GCT-GCTGT--ACATATGGTGCTGAGACTATGGTCATG  946

seq1  TGCTCCTATTTTTGGCTAGATGAGAATATTGATTAGCATGAAGAGGATAA  1000
      |||| ||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TGCT-CTATTTTTGGCTAGATGAG-ATATTGA-TAGCATGAAGAGGATAA  993

seq1  ATAAGTCATTTGCTGTTACATGT-GGGCTGCTTCATCCACAGTCTTACAA  1049
      ||||||||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  ATAAGTCATTTGCTG-TACATGTGGGGCTGCTTCATCCACAGT-TTACAA  1041

seq1  TTATCCCAATATCTCAAACCAGGCTTGGTGTGAGCATACA  1089
      |||||||||| |||||||||||||||||||||||| ||||
seq2  TTATCCCAAT-TCTCAAACCAGGCTTGGTGTGAGC-TACA  1079