BAC Information

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BAC

Clone NameB6Ng01-031E15
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,346 - 1,870,44338,719,914 - 38,720,877
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031E15.bB6Ng01-031E15.g
ACCDH860951DH860952
length500950
definitionDH860951|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E15, 5' end.DH860952|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,443)(38,719,914 - 38,720,877)
sequence
cacactatatactcactgataagtggatattagcccagaaacttaggata
cccaagatataagatacaatttgctaaacgcatgaaattcaagaagaacg
aagaccaaagtgtggacactttgccccttcttagaaatgggaacaaaaca
cccattgaaggagttacagagacaaaatttggagctgtgacgaaaggatg
gaccatctagtgattgccatatacagggatccatcccataatcagctccc
aaacgctgacaccattgcatacactagcaagattttactgaaaggaccaa
gatatagctgtctcttgtgagactatgccggggcctagcaaacacagaag
tggatgctcacagtcacctattggatgggtcacacggcccccaatgaagg
agctagagaaattacccaaggagctaaagggaactgcagccctattggtg
gaacaacattatgaactaaccaataccctggagctcttgactctagctgc

gaattcttaacatttgtttagttacatcatagtgttctattatttaaatt
tgtgaactgagtggacaacttctgaaaacaagtaacagagaggaacagat
aagagtcagtgaattgaaagaaggatgaaaaattgcctttaaatatactt
ttcaatgagaccacaatactagaacccatgttagagaggtagggcattac
ctgaaaaggtcatgcaaactaaaaacaaattttatccacatgtagtcaat
tacttcaaataagaaaaacaaaaactaaacaacagtaacaaaacaataac
caaaaacatatcaatccatctctctatacttcactttcatgtctttccat
aaatgttaacaggatactctgtggaccacagtccttagaatttgtggtgg
tttgaggttttctgggttatggataattattttaattaattgttggatgt
tttgagaaatggtaggcttctttgtcataaaattgtttatgaatgcaatg
tggcaaaaaaaaattaacacacatttctaatgcctccttgactttactat
aaatataatttccactaacaggttgtagacagcaaacaataaaagtgcaa
gatctaaccatggaagcattctaaattttctgaagtgatatttgattgac
tttgtttgtcccatccacagatttgagctaggaccttcataattttggtg
ttgatttctatgataatctggaaacttaattttataggtactcattctgg
ttttgtttgttttctgaaataaatgtacaatttatctacttttgatctgc
tgtttattgtcaatagcatgggcagtgccatcataaagtaagctctagca
tagtccaaaataaaaactgtatgctcaacatttatttatttattattatt
tgctttcaattgtagaattttgtctcatcttataacctttgaagctgact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870443
seq2: B6Ng01-031E15.b_454_551

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| ||||| |||||| ||||||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAGCCCTATTGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGC  98
      |||||||||||||||||||| |||||  |||||||||||||| |||||
seq2  ACAACATTATGAACTAACCAATACCCTGGAGCTCTTGACTCTAGCTGC  98

seq1: chr4_38719914_38720877
seq2: B6Ng01-031E15.g_66_1015 (reverse)

seq1  AGTCAGCTTCAAAAGGTCTATAAAGATGAAGAACAAAAATTACAAACAAT  50
      |||||||||| |||||| ||| |||||||   |||||| |     |||||
seq2  AGTCAGCTTC-AAAGGT-TAT-AAGATGA--GACAAAATT---CTACAAT  42

seq1  TGAAAAGCAAATAAATAAATAAATAAATAAATGTTGGAGCATACAGTTTT  100
      || |||||||||||   |||||||||||||||||| ||||||||||||||
seq2  TG-AAAGCAAATAA--TAATAAATAAATAAATGTT-GAGCATACAGTTTT  88

seq1  TATTTTGGACTATGCTAGAGCTTACTTTATGATGGCACTG-CCATGCTAT  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATTTTGGACTATGCTAGAGCTTACTTTATGATGGCACTGCCCATGCTAT  138

seq1  TGACAATAAACAGCAGATCAAAAAGTAGATAAATTGTACATTTATTTCAG  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGACAATAAACAGCAGATC-AAAAGTAGATAAATTGTACATTTATTTCAG  187

seq1  AAAACAAAACAAAAACCAGAATGAGTACCTATAAAATTAAGTTTCCAGAT  249
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAA--CAAAACCAGAATGAGTACCTATAAAATTAAGTTTCCAGAT  235

seq1  TATCATTAGAAATCAACACC-AAATTATGAAGGTCCTAGCTCAAATCTGT  298
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  TATCA-TAGAAATCAACACCAAAATTATGAAGGTCCTAGCTCAAATCTGT  284

seq1  GGATGGGACAAACAAAGTCAATCAAATATCACTTCAGAAAATTTAGAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGACAAACAAAGTCAATCAAATATCACTTCAGAAAATTTAGAATG  334

seq1  CTTCCATGGTTAGATCTTGCACTTTTATTGTTTGCTGTCTACAACCTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGGTTAGATCTTGCACTTTTATTGTTTGCTGTCTACAACCTGTT  384

seq1  AGTGGAAATTATATTTATAGTAAAGTCAAGGAGGCATTAGAAATGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAATTATATTTATAGTAAAGTCAAGGAGGCATTAGAAATGTGTGT  434

seq1  TAATTTTTTTTTGCCACATTGCATTCATAAACAATTTTATGACAAAGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTTGCCACATTGCATTCATAAACAATTTTATGACAAAGAAG  484

seq1  CCTACCATTTCTCAAAACATCCAACAATTAATTAAAATAATTATCCATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCATTTCTCAAAACATCCAACAATTAATTAAAATAATTATCCATAA  534

seq1  CCCAGAAAACCTCAAACCACCACAAATTCTAAGGACTGTGGTCCACAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAACCTCAAACCACCACAAATTCTAAGGACTGTGGTCCACAGAG  584

seq1  TATCCTGTTAACATTTATGGAAAGACATGAAAGTGAAGTATAGAGAGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTTAACATTTATGGAAAGACATGAAAGTGAAGTATAGAGAGATG  634

seq1  GATTGATATGTTTTTGGTTATTGTTTTGTTACTGTTGTTTAGTTTTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATATGTTTTTGGTTATTGTTTTGTTACTGTTGTTTAGTTTTTGTT  684

seq1  TTTCTTATTTGAAGTAATTGACTACATGTGGATAAAATTTGTTTTTAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTTGAAGTAATTGACTACATGTGGATAAAATTTGTTTTTAGTT  734

seq1  TGCATGACCTTTTCAGGTAATGCCCTACCTCTCTAACATGGGTTCTAGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACCTTTTCAGGTAATGCCCTACCTCTCTAACATGGGTTCTAGTA  784

seq1  TTGTGGTCTCATTGAAAAGTATATTTAAAGGCAATTTTTCATCCTTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCTCATTGAAAAGTATATTTAAAGGCAATTTTTCATCCTTCTTT  834

seq1  CAATTCACTGACTCTTATCTGTTCCTCTCTGTTACTTGTTTTCAGAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACTGACTCTTATCTGTTCCTCTCTGTTACTTGTTTTCAGAAGTT  884

seq1  GTCCACTCAGTTCACAAATTTAAATAATAGAACACTATGATGTAACTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTCAGTTCACAAATTTAAATAATAGAACACTATGATGTAACTAAA  934

seq1  CAAATGTTAAGAATTC  964
      ||||||||||||||||
seq2  CAAATGTTAAGAATTC  950