BAC Information

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BAC

Clone NameB6Ng01-031G15
Chromosome4 (Build37)
Map Location 145,210,608 - 145,272,446
singlet/doubletdoublet
Overlap geneOTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379
Upstream geneLOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031G15.bB6Ng01-031G15.g
ACCDH861035DH861036
length1,0501,056
definitionDH861035|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G15, 5' end.DH861036|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,210,608 - 145,211,475)(145,271,365 - 145,272,446)
sequence
gaattcctgtttctttctttgagttttcctattatgtgtttatgtaaatg
ctctgagatatccagagactcctgaatgagggaaattctagttaaaaatc
ataactttttcattgtgtttcctttacatttctctgctttctttggaaaa
gcaaccagtgctatattctctgagatcactccttatctcttatctagctt
cagtcaagttaaaaaagttcaagtaataacttaaatatccagaacaagaa
attatatttctatacatataatagttgcaattgtaaaaaaatcttactat
tgctttaaaatgttcccttatttatgaatctaaaaatatacaaggtttca
agtggatatagaggtgttggtttggtcaatttttttaaatttaacttttt
gacatttgatctctgtgtttagatctgggacaacatgatctttatcctag
ctttttggatgttgaaacaaacctatttagtgatttccctgatactatcg
gttatttcattaatttatacctgaccaaatttatacctgattcagtgtct
ctctgaatcaaactgtaaccatagaattagagatatattgtttagagttc
tactttctgaaaattcactacagatggatcaattatttgtcccagcttat
ggaaagtacaattttcttttttgtttttggttttttttatttttttaatt
ttttttggtttttcgagacagggtttctctgtatagccctggctgtcctg
gaactcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaaggtgtgcaccaccacgcccggcac
aattttcttttttattgatcattttattcatttacttgtcaaatgtatgc
ccctctcattccctgtctggaatctctatatctacccctccctccggctt
ttatgatgatgccccaccaccgatcactactccacctcatgccctaggat
gctcctatgctggaatactgaacatcaagtaccagggactctcctcctgt

gaattcattctgaacatggagatactattgctgaagaaagttgtcatgac
catgattgtgaggagccgcccttgcagtcaccattacaagatagtgctga
cattcggtgttctaactggtaaacaagtagtctgcgcatgtgctggggta
tttttccattccttgtgccctgcctgtcccgtggcatcatctgggttgat
ggtgagcagccaatcagggcaaggcacatctccaaccgctcttcgtggtc
tataaaaggaccgagtttcctgtgctctgggtctcctcctccccagaagc
tgatcatctatctctcgagatgcattaaagctttgctgcagaaggatccg
agtttgtcctgtgtgtgtgttcttgccggcgagattcagagacacaggga
cacatgatatcagcaaatattcagtgctttttatgtatttctttgacctt
atatttctctcatgtcaaatatttctcttggcatttaacaggtatatgaa
tgatctctttcaacgccctggcctcagaagtatgcattgacaatgagaaa
aagcagattataaagtaccttggaaagtcagaaaatgaatgagaattgac
gagggaaatattgatttcctaggaacaacaaacactaggctagggaataa
tcaagtgcagaaacccaggctctcagtgttccttctagcactttctcagg
aataatcaaatgctgcaccaaagtcacaaatgtcttctgaaaaatcccac
aagaaatttgcccagaaaacagtgcagaacacagaaagaaggggaatatg
gtacagccatcacacaaagctgaccttacctgggtccaaagcaaatgacc
acgaaaacatgcgcacagaaatataaaagtatgggtgctacaggcacttt
aaaagttctctctatagatgcagaaagtaactcaactggattcatgaaga
gattcaaactgtttagcagtacaatcaacactcaggcataaactatgtat
aatcagtggagaaagctcctgaagatatatccatatatctatgaagctag
ggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145210608_145211475
seq2: B6Ng01-031G15.b_44_1093

seq1  GAATTCCTGTTTCTTTCTTTCAGTTTTCCTACTATATGTTTATGTAAATT  50
      |||||||||||||||||||| |||||||||| ||| ||||||||||||| 
seq2  GAATTCCTGTTTCTTTCTTTGAGTTTTCCTATTATGTGTTTATGTAAATG  50

seq1  CTCTGAGATATCCAGAGACCCCTGAATGCGGGAAATTCTAGTT-AAAATC  99
      ||||||||||||||||||| |||||||| |||||||||||||| ||||||
seq2  CTCTGAGATATCCAGAGACTCCTGAATGAGGGAAATTCTAGTTAAAAATC  100

seq1  ATAACTTGTTCATTGTGTTTCCATTACATTTCTCTGCTTTCTTTGGAAAA  149
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  ATAACTTTTTCATTGTGTTTCCTTTACATTTCTCTGCTTTCTTTGGAAAA  150

seq1  GTAACCAGTGCTATATTCTCTGAGATCACTCCTTATCTCTTATCTAGCTT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAGTGCTATATTCTCTGAGATCACTCCTTATCTCTTATCTAGCTT  200

seq1  CAGTGAAGTTAAAAAAGTTCAAGTAAAAATTTAAATATCTAGAACAAGAA  249
      |||| ||||||||||||||||||||| || ||||||||| ||||||||||
seq2  CAGTCAAGTTAAAAAAGTTCAAGTAATAACTTAAATATCCAGAACAAGAA  250

seq1  ATTACATTTCTATACATATAATAGTTGGAATTGT--AAAAATCTTACTAT  297
      |||| |||||||||||||||||||||| ||||||  ||||||||||||||
seq2  ATTATATTTCTATACATATAATAGTTGCAATTGTAAAAAAATCTTACTAT  300

seq1  TGCTTTAAAATGTTCCCTTATTTATGAATCTAAAAATATACAAGGTTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAATGTTCCCTTATTTATGAATCTAAAAATATACAAGGTTTCA  350

seq1  AGTGGATATAGAGCTGTTGGTTTGGGCAATTTTTTTTTATTTAACTTTTT  397
      ||||||||||||| ||||||||||| ||||||||||  ||||||||||||
seq2  AGTGGATATAGAGGTGTTGGTTTGGTCAATTTTTTTAAATTTAACTTTTT  400

seq1  GACATTTGATCTCTGTGTTTAGATCTGGGACAACATAATCATTATCCTAG  447
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  GACATTTGATCTCTGTGTTTAGATCTGGGACAACATGATCTTTATCCTAG  450

seq1  CATTTTAGATGTTGAAACAAATCTATTTAGTGATTTCCCTGACACTATCG  497
      | |||| |||||||||||||| |||||||||||||||||||| |||||||
seq2  CTTTTTGGATGTTGAAACAAACCTATTTAGTGATTTCCCTGATACTATCG  500

seq1  GTTATATCATAAATTTATACTTGACCAAATTTATACCTGATTCAGTGTCA  547
      ||||| |||| ||||||||| |||||||||||||||||||||||||||| 
seq2  GTTATTTCATTAATTTATACCTGACCAAATTTATACCTGATTCAGTGTCT  550

seq1  CTCTGAATTGAACTGTAACCATAGAATTAGAGATCTATTGCTTAGAGTTT  597
      ||||||||  |||||||||||||||||||||||| ||||| |||||||| 
seq2  CTCTGAATCAAACTGTAACCATAGAATTAGAGATATATTGTTTAGAGTTC  600

seq1  TACTTTCGGGAAATTCACTACAGATGGATC-CTTATTTGTCCCAGCTTAT  646
      ||||||| | ||||||||||||||||||||  ||||||||||||||||||
seq2  TACTTTCTGAAAATTCACTACAGATGGATCAATTATTTGTCCCAGCTTAT  650

seq1  GCAAAGTACAATTTTGTTTT------------------------------  666
      | ||||||||||||| ||||                              
seq2  GGAAAGTACAATTTTCTTTTTTGTTTTTGGTTTTTTTTATTTTTTTAATT  700

seq1  --------------------------------------------------  666
                                                        
seq2  TTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  750

seq1  --------------------------------------------------  666
                                                        
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  800

seq1  --------------------------------------------------  666
                                                        
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACGCCCGGCAC  850

seq1  -------TTATTTATTGGTC-TTTTATTTATCTACATGTCAAATGTTATG  708
             || ||||||| || ||||||| || ||| ||||||||| ||||
seq2  AATTTTCTTTTTTATTGATCATTTTATTCATTTACTTGTCAAATG-TATG  899

seq1  CCCCTTCTGTTTCCTGTCTGGAAACTCTAAATCCCACCCCTCCGCCTGGC  758
      |||||    || ||||||||||| ||||| || | ||||||||  | |||
seq2  CCCCTCTCATTCCCTGTCTGGAATCTCTATAT-CTACCCCTCCCTCCGGC  948

seq1  TTTTATGATGATTCTCCCACCACAGATCCACCTACTCCCACCTCATGCCC  808
      |||||||||||| | |||||||| ||||   ||||| |||||||||| ||
seq2  TTTTATGATGATGC-CCCACCACCGATC--ACTACT-CCACCTCATG-CC  993

seq1  CTAGGATTCTCCTATGCTGGGATACTGAACCTTCACAGTACCAAGGGACT  858
      ||||||| |||||||||||| |||||||| | ||| |||||| |||||||
seq2  CTAGGATGCTCCTATGCTGGAATACTGAA-CATCA-AGTACC-AGGGACT  1040

seq1  CCTCTCCTGT  868
      |  |||||||
seq2  CTCCTCCTGT  1050

seq1: chr4_145271365_145272446
seq2: B6Ng01-031G15.g_64_1119 (reverse)

seq1  TTTGCCCTAGGCTTTCATAGATATATTGATATATATCTATCAGTGAGCTT  50
      ||||||||||   ||||||||||||| ||||||| |   |||| ||||||
seq2  TTTGCCCTAG--CTTCATAGATATATGGATATATCT---TCAG-GAGCTT  44

seq1  TCTCCCACTGATTATACATAGTTTATGCCTTGAGTTGTTTGATTTGTACT  100
      ||| ||||||||||||||||||||||||| |||||   |||| |||||| 
seq2  TCT-CCACTGATTATACATAGTTTATGCC-TGAGT--GTTGA-TTGTAC-  88

seq1  TGCTAAAACAGTTTTGAATCTCTGTCATGAAATCAAGTTGAGTTTACTTT  150
      |||| |||||| ||||||||||| ||||| |||| ||||||| |||||||
seq2  TGCT-AAACAG-TTTGAATCTCT-TCATG-AATCCAGTTGAG-TTACTTT  133

seq1  CTGCATCTATTAGAGAGAAACTTTTTAAAAGTTGCCCTGTAGCACCCATA  200
      ||||||||| ||||||| |||||||  |||||   |||||||||||||||
seq2  CTGCATCTA-TAGAGAG-AACTTTT--AAAGT--GCCTGTAGCACCCATA  177

seq1  CTGTTATTATTTTCTGTGCGCATGTTTTCGTGGTCATTTGCTTTTGGACC  250
      || ||||   ||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTTAT--ATTTCTGTGCGCATGTTTTCGTGGTCATTTGC-TTTGGACC  224

seq1  CAGGTAAGGTCAGCTTTGTGTGATGGCTGTACCATATTCCCCTTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGGTCAGCTTTGTGTGATGGCTGTACCATATTCCCCTTCTTTCT  274

seq1  GTGTTCTGCACTGTTTTCTGGGCAAATTTCTTGTGGGATTTTTCAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGCACTGTTTTCTGGGCAAATTTCTTGTGGGATTTTTCAGAAGA  324

seq1  CATTTGTGACTTTGGTGCAGCATTTGATTATTCCTGAGAAAGTGCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGACTTTGGTGCAGCATTTGATTATTCCTGAGAAAGTGCTAGAA  374

seq1  GGAACACTGAGAGCCTGGGTTTCTGCACTTGATTATTCCCTAGCCTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTGAGAGCCTGGGTTTCTGCACTTGATTATTCCCTAGCCTAGTG  424

seq1  TTTGTTGTTCCTAGGAAATCAATATTTCCCTCGTCAATTCTCATTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTCCTAGGAAATCAATATTTCCCTCGTCAATTCTCATTCATTT  474

seq1  TCTGACTTTCCAAGGTACTTTATAATCTGCTTTTTCTCATTGTCAATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTCCAAGGTACTTTATAATCTGCTTTTTCTCATTGTCAATGCA  524

seq1  TACTTCTGAGGCCAGGGCGTTGAAAGAGATCATTCATATACCTGTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGAGGCCAGGGCGTTGAAAGAGATCATTCATATACCTGTTAAAT  574

seq1  GCCAAGAGAAATATTTGACATGAGAGAAATATAAGGTCAAAGAAATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGAAATATTTGACATGAGAGAAATATAAGGTCAAAGAAATACAT  624

seq1  AAAAAGCACTGAATATTTGCTGATATCATGTGTCCCTGTGTCTCTGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACTGAATATTTGCTGATATCATGTGTCCCTGTGTCTCTGAATC  674

seq1  TCGCCGGCAAGAACACACACACAGGACAAACTCGGATCCTTCTGCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGGCAAGAACACACACACAGGACAAACTCGGATCCTTCTGCAGCAA  724

seq1  AGCTTTAATGCATCTCGAGAGATAGATGATCAGCTTCTGGGGAGGAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATGCATCTCGAGAGATAGATGATCAGCTTCTGGGGAGGAGGAG  774

seq1  ACCCAGAGCACCGGAAACTCGGTCCTTTTATAGACCACGAAGAGCGGTTG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCACAGGAAACTCGGTCCTTTTATAGACCACGAAGAGCGGTTG  824

seq1  GAGATGTGCCTTGCCCTGATTGGCTGCTCACCATCAACCCAGATGATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGCCTTGCCCTGATTGGCTGCTCACCATCAACCCAGATGATGCC  874

seq1  ACGGGACAGGCAGGGCACAAGGAATGGAAAAATACCCCAGCACATGCGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGACAGGCAGGGCACAAGGAATGGAAAAATACCCCAGCACATGCGCA  924

seq1  GACTACTTGTTTACCAGTTAGAACACCGAATGTCAGCACTATCTTGTAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTGTTTACCAGTTAGAACACCGAATGTCAGCACTATCTTGTAAT  974

seq1  GGTGACTGCAAGGGCGGCTCCTCACAATCATGGTCATGACAACTTTCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGCAAGGGCGGCTCCTCACAATCATGGTCATGACAACTTTCTTC  1024

seq1  AGCAATAGTATCTCCATGTTCAGAATGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  AGCAATAGTATCTCCATGTTCAGAATGAATTC  1056