BAC Information

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BAC

Clone NameB6Ng01-031P09
Chromosome4 (Build37)
Map Location 97,280,665 - 97,397,596
singlet/doubletdoublet
Overlap genenone
Upstream geneCyp2j5, LOC100039415, LOC620779, LOC620883, EG638698
Downstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031P09.bB6Ng01-031P09.g
ACCDH861433DH861434
length1,065992
definitionDH861433|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P09, 5' end.DH861434|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,280,665 - 97,281,741)(97,396,595 - 97,397,596)
sequence
gaattcactgctttagtttcttttggttgagctagtatgatgggagactc
caggagtctgttcttatcctaaaaagacaagcatatgaattgattaagtc
agaggtaggggtcactggggacatggacattgctctttggcttaatagtt
tcccatcacttactatatactttgaaactcaaataggcaaacataattca
acacaaattcttccttcaagaaaaaaagtaaagtaagcttgggatatagc
tcactggtaaaacatttgcctagcatatgcaagggccttggttcaatctc
cagtactacaaggcgaaaaagaggaatcacgcatgtttataactaaccat
gatgttcaggcaaaagtaaaggccattaaggagtttgcatttctgaactc
cattccctccagcagggatgtaatgggaagagacagaccctcaggaaaat
gacacccaggtgacggtgacgatgctgagtatgcaggaggaagccttaca
aggaggaagggttgggggttatgctattatgagttagaagcgcttaaaac
tgacccgggaaaagccagcctgttcacgaactagaatagtggaagagatg
aatgaagggagtagatgtcaaagacagtggtgccttgccaaattttatga
acaaaattaatgcctaaaaatattcctctctaatcatatcatatgattaa
taaatattactgatggaaaagtcatgtgctgagctggaaggggaaaaatc
aactacttcaatttttcttttttctttttctttgttttttttgtttgttt
gtttggttggttgggttggttttttttcaagacagggtttctctgtgtca
cccttggcttgtcctagaactcactttgtagaccggctggcctcgaactc
agaaatcctcttgcctctgcttcccaagtgctgggattaaagcgtgcacc
accaccgtcaaccacttccatttttctatggcttccagcaaaaacctata
agcaaatgttctgaccagtttagcactaaaataaaaatgagcaaaaatca
tatgattgtcattta
gaattcaggtgtcaagtggaacacagccgtctgagtcatcccccacactc
tgctgagaagtagatgtgactttctcttttgggcaaacagtgacccagct
aaagtaggtagtagggagtggtagaattgtcaggctggaagaatgtttgc
ttaatttttttttaaagatggtctcttaacacacccaaggcagaaaaatc
ttgacagatgtagataatttatgagcagctgcatatcaatgcacaagaag
ttaaaaggaagaatttggcagagtttcctggttctacgtttaaacattat
agtatagagctgctatcctagaccatgactgctcagtaagaaagaattga
tgttggggcggatggccagcactgagggaagaaagaagatgttttggaag
gtggaggatatcggaatggctaagacccacaaagacttcctacctgccca
aagcatcttttcctcttacaggaaagaggaactattccttggactgagtg
ttattctccttcatttccacccattgggctcagaagagaaggtttgtgta
ttttaattaaaacagatctttgtcaaactgtttcaacttgagtgtttttt
ttttttcacaaacgcctagactatgcctaccatgtggtaggagtcacgaa
gccgtgtggcaccatattacacaaggtgctctgggcttgcttctgtcaaa
caaattaaacgcctgcacttcacacactttacaaggccaaattaaacact
tgtcaaggggagatgcctttgctgtgcagggcctgcagcctccttgatgt
gggctagctttctcgcaaatcttccggctctctgggtgaattacaggaag
atggctcttaatgtcctaagtggtcatttccaagatttagttctcccaca
aggatgctcttgttcatctatctaacactgtagtagtgagtggagatctt
accccacagatggttcgtttctgcaataaacatgctatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_97280665_97281741
seq2: B6Ng01-031P09.b_47_1111

seq1  GAATTCACTGCTTTAGTTTCTTTTGGTTGAGCTAGTATGATGGGAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTTTAGTTTCTTTTGGTTGAGCTAGTATGATGGGAGACTC  50

seq1  CAGGAGTCTGTTCTTATCCTAAAAAGACAAGCATATGAATTGATTAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCTGTTCTTATCCTAAAAAGACAAGCATATGAATTGATTAAGTC  100

seq1  AGAGGTAGGGGTCACTGGGGACATGGACATTGCTCTTTGGCTTAATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGGGGTCACTGGGGACATGGACATTGCTCTTTGGCTTAATAGTT  150

seq1  TCCCATCACTTACTATATACTTTGAAACTCAAATAGGCAAACATAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACTTACTATATACTTTGAAACTCAAATAGGCAAACATAATTCA  200

seq1  ACACAAATTCTTCCTTCAAGAAAAAAAGTAAAGTAAGCTTGGGATATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTCTTCCTTCAAGAAAAAAAGTAAAGTAAGCTTGGGATATAGC  250

seq1  TCACTGGTAAAACATTTGCCTAGCATATGCAAGGGCCTTGGTTCAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTAAAACATTTGCCTAGCATATGCAAGGGCCTTGGTTCAATCTC  300

seq1  CAGTACTACAAGGCGAAAAAGAGGAATCACGCATGTTTATAACTAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTACAAGGCGAAAAAGAGGAATCACGCATGTTTATAACTAACCAT  350

seq1  GATGTTCAGGCAAAAGTAAAGGCCATTAAGGAGTTTGCATTTCTGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCAGGCAAAAGTAAAGGCCATTAAGGAGTTTGCATTTCTGAACTC  400

seq1  CATTCCCTCCAGCAGGGATGTAATGGGAAGAGACAGACCCTCAGGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTCCAGCAGGGATGTAATGGGAAGAGACAGACCCTCAGGAAAAT  450

seq1  GACACCCAGGTGACGGTGACGATGCTGAGTATGCAGGAGGAAGCCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCAGGTGACGGTGACGATGCTGAGTATGCAGGAGGAAGCCTTACA  500

seq1  AGGAGGAAGGGTTGGGGGTTATGCTATTATGAGTTAGAAGCGCTTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGGGTTGGGGGTTATGCTATTATGAGTTAGAAGCGCTTAAAAC  550

seq1  TGACCCGGGAAAAGCCAGCCTGTTCACGAACTAGAATAGTGGAAGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCGGGAAAAGCCAGCCTGTTCACGAACTAGAATAGTGGAAGAGATG  600

seq1  AATGAAGGGAGTAGATGTCAAAGACAGTGGTGCCTTGCCAAATTTTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGGAGTAGATGTCAAAGACAGTGGTGCCTTGCCAAATTTTATGA  650

seq1  ACAAAATTAATGCCTAAAAATATTCCTCTCTAATCATATCATATGATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAATGCCTAAAAATATTCCTCTCTAATCATATCATATGATTAA  700

seq1  TAAATATTACTGATGGAAAAGTCATGTGCTGAGCTGGAAGGGGAAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTACTGATGGAAAAGTCATGTGCTGAGCTGGAAGGGGAAAAATC  750

seq1  AACTACTTCAATTTTTCTTTTTTCTTTTTCTTTGTTTTTTTTGTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTCAATTTTTCTTTTTTCTTTTTCTTTGTTTTTTTTGTTTGTTT  800

seq1  GTTTGGTTGGTTGGTTGGTTTTTTTTTCTAGACAGGGTTTCTCTGTGTCA  850
      |||||||||||||| | | ||||||||| |||||||||||||||||||||
seq2  GTTTGGTTGGTTGGGTTGGTTTTTTTTCAAGACAGGGTTTCTCTGTGTCA  850

seq1  CCC-TGGC-TGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  898
      ||| |||| ||||||||||||||||||||||||| |||||||||||||||
seq2  CCCTTGGCTTGTCCTAGAACTCACTTTGTAGACC-GGCTGGCCTCGAACT  899

seq1  CAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCA  948
      ||||||||||| ||||||||| |||||||||||||||||||| |||||||
seq2  CAGAAATCCTCTTGCCTCTGCTTCCCAAGTGCTGGGATTAAA-GCGTGCA  948

seq1  CCACCACCGCCCAGCCACTTCAATTTTTCTATTGGCTTCCAGCAAAACAC  998
      |||||||||  || ||||||| ||||||||| ||||||||||||||| ||
seq2  CCACCACCG-TCAACCACTTCCATTTTTCTA-TGGCTTCCAGCAAAA-AC  995

seq1  TTATTAAGCAAATGTTCTGCACCAGTTTAAGCACTAAAAATACAAAAATG  1048
       || ||||||||||||||| |||||||| |||||||||   | |||||||
seq2  CTA-TAAGCAAATGTTCTG-ACCAGTTT-AGCACTAAA---ATAAAAATG  1039

seq1  AGCAAAACATCATATGATTTGTCAATTTA  1077
      ||||||| ||||||||| ||||| |||||
seq2  AGCAAAA-ATCATATGA-TTGTC-ATTTA  1065

seq1: chr4_97396595_97397596
seq2: B6Ng01-031P09.g_68_1059 (reverse)

seq1  CACCATAGCAATGTTTATTTGCAGAAACGAACCATCTGTGGGTGTAAAGA  50
      ||||||||| ||||||| |||||||||||||||||||||||| || ||||
seq2  CACCATAGC-ATGTTTA-TTGCAGAAACGAACCATCTGTGGG-GT-AAGA  46

seq1  TCTCCACTCACTAACTACAGTGTTAGAATAGATGGAACAAGAAGCATCCT  100
      |||||||||||| ||||||||||||| |||||| ||||||| ||||||||
seq2  TCTCCACTCACT-ACTACAGTGTTAG-ATAGAT-GAACAAG-AGCATCCT  92

seq1  TGTGGGGAGAACTAAATCTTGGAAATGACCACTTAGGACATAAAGAGCCA  150
      ||| ||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TGT-GGGAGAACTAAATCTTGGAAATGACCACTTAGGACATTAAGAGCC-  140

seq1  ATCTTCCTGTAATTCACCCAAGAGAGCCGG-AGATTTGCGAGAAAGCTAG  199
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ATCTTCCTGTAATTCACCC-AGAGAGCCGGAAGATTTGCGAGAAAGCTAG  189

seq1  CCCACATCAAGGAGGCTGCAGGCCCTGCACAGCAAAGGCATCTCCCCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCAAGGAGGCTGCAGGCCCTGCACAGCAAAGGCATCTCCCCTTG  239

seq1  ACAAGTGTTTAATTTGGCCTTGTAAAGTGTGTGAAGTGCAGGCGTTTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTTAATTTGGCCTTGTAAAGTGTGTGAAGTGCAGGCGTTTAAT  289

seq1  TTGTTTGACAGAAGCAAGCCCAGAGCACCTTGTGTAATATGGTGCCACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGACAGAAGCAAGCCCAGAGCACCTTGTGTAATATGGTGCCACAC  339

seq1  GGCTTCGTGACTCCTACCACATGGTAGGCATAGTCTAGGCGTTTGTGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGTGACTCCTACCACATGGTAGGCATAGTCTAGGCGTTTGTGAAA  389

seq1  AAAAAAAAACACTCAAGTTGAAACAGTTTGACAAAGATCTGTTTTAATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACACTCAAGTTGAAACAGTTTGACAAAGATCTGTTTTAATTA  439

seq1  AAATACACAAACCTTCTCTTCTGAGCCCAATGGGTGGAAATGAAGGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACAAACCTTCTCTTCTGAGCCCAATGGGTGGAAATGAAGGAGAA  489

seq1  TAACACTCAGTCCAAGGAATAGTTCCTCTTTCCTGTAAGAGGAAAAGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCAGTCCAAGGAATAGTTCCTCTTTCCTGTAAGAGGAAAAGATG  539

seq1  CTTTGGGCAGGTAGGAAGTCTTTGTGGGTCTTAGCCATTCCGATATCCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCAGGTAGGAAGTCTTTGTGGGTCTTAGCCATTCCGATATCCTC  589

seq1  CACCTTCCAAAACATCTTCTTTCTTCCCTCAGTGCTGGCCATCCGCCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCAAAACATCTTCTTTCTTCCCTCAGTGCTGGCCATCCGCCCCA  639

seq1  ACATCAATTCTTTCTTACTGAGCAGTCATGGTCTAGGATAGCAGCTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATTCTTTCTTACTGAGCAGTCATGGTCTAGGATAGCAGCTCTAT  689

seq1  ACTATAATGTTTAAACGTAGAACCAGGAAACTCTGCCAAATTCTTCCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATGTTTAAACGTAGAACCAGGAAACTCTGCCAAATTCTTCCTTT  739

seq1  TAACTTCTTGTGCATTGATATGCAGCTGCTCATAAATTATCTACATCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTGTGCATTGATATGCAGCTGCTCATAAATTATCTACATCTGT  789

seq1  CAAGATTTTTCTGCCTTGGGTGTGTTAAGAGACCATCTTTAAAAAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTTCTGCCTTGGGTGTGTTAAGAGACCATCTTTAAAAAAAAAT  839

seq1  TAAGCAAACATTCTTCCAGCCTGACAATTCTACCACTCCCTACTACCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAACATTCTTCCAGCCTGACAATTCTACCACTCCCTACTACCTAC  889

seq1  TTTAGCTGGGTCACTGTTTGCCCAAAAGAGAAAGTCACATCTACTTCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGGTCACTGTTTGCCCAAAAGAGAAAGTCACATCTACTTCTCA  939

seq1  GCAGAGTGTGGGGGATGACTCAGACGGCTGTGTTCCACTTGACACCTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGTGGGGGATGACTCAGACGGCTGTGTTCCACTTGACACCTGAA  989

seq1  TTC  1002
      |||
seq2  TTC  992