BAC Information

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BAC

Clone NameB6Ng01-034C01
Chromosome4 (Build37)
Map Location 142,246,864 - 142,429,414
singlet/doubletdoublet
Overlap geneLOC546484, 6330411D24Rik
Upstream geneDdi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C01.bB6Ng01-034C01.g
ACCDH862976DH862977
length9641,081
definitionDH862976|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C01, 5' end.DH862977|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,428,445 - 142,429,414)(142,246,864 - 142,247,952)
sequence
gaattctttccacggtgttggtcttttaatgagacagggctcatgcaccc
gtttccatattaaattcttataaaaagatcacttttcccttttacaatgt
ctgccttgatgatgtgcgcagttgttagttcattggaggagagacagctc
tgaactcatgtctcctgtccataattagttttaagcatttctgacagtcc
acgagtacttgtcacggcctgaaacttttcactgggatggttaatcttgg
ttgtcagcttgacacatcttgtctcagagagaccctcattgaggaattgt
caccatcgaattagcccatgggcacgtttgtgggggcactttctcgactg
ttaatcaatgtggcaggatccagctcactgtgggcagcgctgtctctcgg
taggcaggcctgggttgtataaggaaataggcaacagtaaacaatgttcc
tccatggcctctgcttctgttcccatcttgaggttctacccggacttccc
tttatgatagacttggccaagttctctgggaccctgggttgcccctgttg
ctcagcagaccagtgtcctctggccacactgtgttcaggtcagatatggg
cggcaggccagccctttgcacctgagagcatttctagttcttctgtttcc
aatgtgatgtctgcccagccccagccccagccccagctccacccttgcta
ttaagccctcaaatcacaagaatccatttaaaatacagtcctacacgcag
gcctggcctcttccccttgccatggacaaatgtcccatttcaccaacatc
tctgggaggtcctgaacctcatttgcatgtggaatttgccctgctcctga
gctcagaaggctgccttctgtcttgcatgctaattaccagtaacctatct
ccttagagttgcagtttgcacacctttaacccaccctgtgacgtcttctg
aaagaaagaaactg
gaattctcttttaaattctgagagtttacatatatctctccttgggtttt
aatatagagggttctagttttcacagtgtcatttcctcctctccctctca
ggcctgctttcgtcttgtttactgtattgactatgacagcaagcatcgtg
ctaaataatagatgggctggcaggagccccgttttgattgtctctggaat
gcaaccgtatttaccatcaagcatctttcttatgttcagttctgggagca
ttttgatctgtctccagttaataagaggcattctttctccccccgcacct
ccactctgtcttaagttatgaatgattatcgaagtgtactgactactctc
tcaggagcgctggaaggaatcatgcccattttcttttgatcagttggcat
gttgagtcctggcctttacaggatgaagctcattagtcacaaggcattga
catcagcatgctgctggattccccttatggaagcactgatttaagatttc
tccatgtcccagaagtgaaaatggcttgtaatgataaggtcctgccagga
accttcaaaattgcttcccatttttttgtgtttctcttggaaaaaaaatt
gcataagaaaaataaaggacctgcctattggagctttgataaaagccatg
cttggggggccagcaagagggctaaatgggtaaaagtgcctgccgccaag
cctgatggcatgtgttcgattccctagacccatgtggtgaagggagagaa
ccaacacctacatgcttccctctgatctacaacagagaaccttgtaagtg
tgcacacatgcacacgtgcgcgcgcgcacgcgcacacacacacacacaca
cacacacacacacacacacacacacacacatgagccagtgagcacacaca
caaagaaaattaaaaaaaaaaaacaaaacaggtagacatggaggatgtct
ttgacaataatttgggctcaatcttctctacttcaaaactcctttcattt
ctgctttgaaatgtccaagaactcaagtcttcctccaaacgctctagtcc
tttgaactacatgattcccttttctggaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142428445_142429414
seq2: B6Ng01-034C01.b_43_1006 (reverse)

seq1  CAGTTTCTTTTCTTTCAGAGGACGTCACAGGGTGGGTTTAAAGGTGTTGC  50
      ||||||| ||||||||||| |||||||||||||||| ||||||||| |||
seq2  CAGTTTC-TTTCTTTCAGAAGACGTCACAGGGTGGG-TTAAAGGTG-TGC  47

seq1  AAAACTGCAACCCCTAAGGGAGATAGGTTACTGGTAATTTAGCATGCAAG  100
       ||||||||| | |||| ||||||||||||||||||| ||||||||||||
seq2  -AAACTGCAA-CTCTAA-GGAGATAGGTTACTGGTAA-TTAGCATGCAAG  93

seq1  ACAG-AGGCAGCCTTCTGGAGCTCAGGAGCAGGGCAAAATCCACATGCAA  149
      |||| |||||||||||| |||||||||||||||||||| |||||||||||
seq2  ACAGAAGGCAGCCTTCT-GAGCTCAGGAGCAGGGCAAATTCCACATGCAA  142

seq1  ATGAGGTTCAGGACCTCCCAGAGATGTTGGTGAATTGGGACATTTGTCCA  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGAGGTTCAGGACCTCCCAGAGATGTTGGTGAAATGGGACATTTGTCCA  192

seq1  TGGCAAGGGGAAGAGGCCAGGCCTGCGTGTAGGACTGTATTTTAAATGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGGGAAGAGGCCAGGCCTGCGTGTAGGACTGTATTTTAAATGGA  242

seq1  TTCTTGTGATTTGAGGGCTTAATAGCAAGGGTGGAGCTGGGGCTGGGGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGATTTGAGGGCTTAATAGCAAGGGTGGAGCTGGGGCTGGGGCT  292

seq1  GGGGCTGGGCAGACATCACATTGG-AACAGAAGAACTAGAAATGCTCTCA  348
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGCTGGGCAGACATCACATTGGAAACAGAAGAACTAGAAATGCTCTCA  342

seq1  GGTGCAAAGGGCTGGCCTGCCGCCCATATCTGACCTGAACACAGTGTGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAAGGGCTGGCCTGCCGCCCATATCTGACCTGAACACAGTGTGGC  392

seq1  CAGAGGACACTGGTCTGCTGAGCAACAGGGGCAACCCAGGGTCCCAGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACACTGGTCTGCTGAGCAACAGGGGCAACCCAGGGTCCCAGAGA  442

seq1  ACTTGGCCAAGTCTATCATAAAGGGAAGTCCGGGTAGAACCTCAAGATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCAAGTCTATCATAAAGGGAAGTCCGGGTAGAACCTCAAGATGG  492

seq1  GAACAGAAGCAGAGGCCATGGAGGAACATTGTTTACTGTTGCCTATTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAGCAGAGGCCATGGAGGAACATTGTTTACTGTTGCCTATTTCC  542

seq1  TTATACAACCCAGGCCTGCCTACCGAGAGACAGCGCTGCCCACAGTGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAACCCAGGCCTGCCTACCGAGAGACAGCGCTGCCCACAGTGAGC  592

seq1  TGGATCCTGCCACATTGATTAACAGTCGAGAAAGTGCCCCCACAAACGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTGCCACATTGATTAACAGTCGAGAAAGTGCCCCCACAAACGTG  642

seq1  CCCATGGGCTAATTCGATGGTGACAATTCCTCAATGAGGGTCTCTCTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGCTAATTCGATGGTGACAATTCCTCAATGAGGGTCTCTCTGAG  692

seq1  ACAAGATGTGTCAAGCTGACAACCAAGATTAACCATCCCAGTGAAAAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGTGTCAAGCTGACAACCAAGATTAACCATCCCAGTGAAAAGTT  742

seq1  TCAGGCCGTGACAAGTACTCGTGGACTGTCAGAAATGCTTAAAACTAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCGTGACAAGTACTCGTGGACTGTCAGAAATGCTTAAAACTAATT  792

seq1  ATGGACAGGAGACATGAGTTCAGAGCTGTCTCTCCTCCAATGAACTAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGGAGACATGAGTTCAGAGCTGTCTCTCCTCCAATGAACTAACA  842

seq1  ACTGCGCACATCATCAAGGCAGACATTGTAAAAGGGAAAAGTGATCTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGCACATCATCAAGGCAGACATTGTAAAAGGGAAAAGTGATCTTTT  892

seq1  TATAAGAATTTAATATGGAAACGGGTGCATGAGCCCTGTCTCATTAAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAATTTAATATGGAAACGGGTGCATGAGCCCTGTCTCATTAAAAG  942

seq1  ACCAACACCGTGGAAAGAATTC  970
      ||||||||||||||||||||||
seq2  ACCAACACCGTGGAAAGAATTC  964

seq1: chr4_142246864_142247952
seq2: B6Ng01-034C01.g_66_1146

seq1  GAATTCTCTTTTAAATTCTGAGAGTTTACATATATCTCTCCTTGGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTAAATTCTGAGAGTTTACATATATCTCTCCTTGGGTTTT  50

seq1  AATATAGAGGGTTCTAGTTTTCACAGTGTCATTTCCTCCTCTCCCTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGGGTTCTAGTTTTCACAGTGTCATTTCCTCCTCTCCCTCTCA  100

seq1  GGCCTGCTTTCGTCTTGTTTACTGTATTGACTATGACAGCAAGCATCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTTTCGTCTTGTTTACTGTATTGACTATGACAGCAAGCATCGTG  150

seq1  CTAAATAATAGATGGGCTGGCAGGAGCCCCGTTTTGATTGTCTCTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATAGATGGGCTGGCAGGAGCCCCGTTTTGATTGTCTCTGGAAT  200

seq1  GCAACCGTATTTACCATCAAGCATCTTTCTTATGTTCAGTTCTGGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGTATTTACCATCAAGCATCTTTCTTATGTTCAGTTCTGGGAGCA  250

seq1  TTTTGATCTGTCTCCAGTTAATAAGAGGCATTCTTTCTCCCCCCGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTGTCTCCAGTTAATAAGAGGCATTCTTTCTCCCCCCGCACCT  300

seq1  CCACTCTGTCTTAAGTTATGAATGATTATCGAAGTGTACTGACTACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGTCTTAAGTTATGAATGATTATCGAAGTGTACTGACTACTCTC  350

seq1  TCAGGAGCGCTGGAAGGAATCATGCCCATTTTCTTTTGATCAGTTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCGCTGGAAGGAATCATGCCCATTTTCTTTTGATCAGTTGGCAT  400

seq1  GTTGAGTCCTGGCCTTTACAGGATGAAGCTCATTAGTCACAAGGCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTCCTGGCCTTTACAGGATGAAGCTCATTAGTCACAAGGCATTGA  450

seq1  CATCAGCATGCTGCTGGATTCCCCTTATGGAAGCACTGATTTAAGATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCATGCTGCTGGATTCCCCTTATGGAAGCACTGATTTAAGATTTC  500

seq1  TCCATGTCCCAGAAGTGAAAATGGCTTGTAATGATAAGGTCCTGCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCCCAGAAGTGAAAATGGCTTGTAATGATAAGGTCCTGCCAGGA  550

seq1  ACCTTCAAAATTGCTTCCCATTTTTTTGTGTTTCTCTTGGAAAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAAATTGCTTCCCATTTTTTTGTGTTTCTCTTGGAAAAAAAATT  600

seq1  GCATAAGAAAAATAAAGGACCTGCCTATTGGAGCTTTGATAAAAGCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAAAAATAAAGGACCTGCCTATTGGAGCTTTGATAAAAGCCATG  650

seq1  CTTGGGGGGCCAGCAAGAGGGCTAAATGGGTAAAAGTGCCTGCCGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGGGCCAGCAAGAGGGCTAAATGGGTAAAAGTGCCTGCCGCCAAG  700

seq1  CCTGATGGCATGTGTTCGATTCCCTAGACCCATGTGGTGAAGGGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGCATGTGTTCGATTCCCTAGACCCATGTGGTGAAGGGAGAGAA  750

seq1  CCAACACCTACATGCTTCCCTCTGATCTACAACAGAGAACCTTGTAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCTACATGCTTCCCTCTGATCTACAACAGAGAACCTTGTAAGTG  800

seq1  TGCACACATGCACACGTGCGCGCGCGCACGCGCACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATGCACACGTGCGCGCGCGCACGCGCACACACACACACACACA  850

seq1  CACACACACACACACACACACACACACACATGAGCCAGTGAGCACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATGAGCCAGTGAGCACACACA  900

seq1  CAAAGAAAATTAAAAAAAAAAAACAAAAACAAGTAAGACATGGAGGATGT  950
      |||||||||||||||||||||||| |||||| || |||||||||||||||
seq2  CAAAGAAAATTAAAAAAAAAAAAC-AAAACAGGT-AGACATGGAGGATGT  948

seq1  CTTTGACAATAATTTGGGCTCAATCTTCTCTACCTCAAAACTCCTTTCCA  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  CTTTGACAATAATTTGGGCTCAATCTTCTCTACTTCAAAACTCCTTT-CA  997

seq1  TTTCTGCTTTGAAAATGTCCCAGGAACTCAAGTCTCACT-CAAACGCTCT  1049
      ||||||||||| |||||| ||| ||||||||||||  || ||||||||||
seq2  TTTCTGCTTTG-AAATGT-CCAAGAACTCAAGTCTTCCTCCAAACGCTCT  1045

seq1  AGTCACTTTGAACTTACAATGATCCCCTTTTCCTGGACCC  1089
      |||| |||||||| ||| ||||| ||||||| ||||||||
seq2  AGTC-CTTTGAAC-TAC-ATGATTCCCTTTT-CTGGACCC  1081