BAC Information

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BAC

Clone NameB6Ng01-034D13
Chromosome4 (Build37)4 (Build37)
Map Location 147,049,319 - 147,050,065146,605,218 - 146,605,721
singlet/doubletsingletsinglet
Overlap geneLOC100043100
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034D13.bB6Ng01-034D13.g
ACCDH863038DH863039
length1,025498
definitionDH863038|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D13, 5' end.DH863039|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,049,319 - 147,050,065)(146,605,218 - 146,605,721)
sequence
gaattctctgatgaatagtaagattggattgttgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
accaagatggaattttcgggtaaagcatttgtcacattcactgcatttgt
aagttttctctcctgtatgaattctctgatgaattctcagactgcttttt
tcagtaaagcatttgccacattcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaatactaagacaggattgttgggtaaagcatttgt
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
atactaagattggattgtttggtaaagcatttgtcacattcactgcattt
gtaaggtttctctcctgtatgaattctctgatgaattctcagactgcttt
tttcagtaaagcatttgccacattcactgcatttgtaaggtttctctcct
gtatgaattctctgatgcatagtaagattgaatttgtttttaaaacattt
gtcacattcactacatttgtaaattatctcttctgtatgaattccctgat
gaatactaagatggatctgatgggtaaagcattttgtcactttttactac
ttttgtaaggtttttttccatgataaattttctgctgactttgtaggttt
ctctctgggtaagatatttgtgaaattcactacattttgtaaagggttcc
cttgcaatattgtcttttttcaccatgacttttatgtttagaaacaaaaa
tattggtctaattctgcatttcggttgtgttttttcttctgcatgttaat
tccttgatgagactaatggtagaaacaaacttaaactgttacagagtcat
tgtatttgcaaactcttagtgttctgggctaaatcttttttggttcgaga
ttgaagagcatcaaactgtgattagtttgtaagtggtacactgaaggatc
aagatgacatgctagcttgtcccat
aataggtggttataaatacaaaagaaaagaaaagaaaagaaaagaaaaga
aaagaaaagaaaagaaaagaaaagaaaagaaagaagaccctgaaaagaaa
atgtagtcaggtgaataataatcattcatagagaatgtgtgtgagacaga
ttatcagacttgaagatatatagtaggttctgttgaccctgagtgtcccc
agagaaaaaccaatttctccatgtggaccagctttatcagataatacatc
ctgaccaagagatagactttggtcacatgctacaggcattttataggcca
ttgtagtttcctatgaggctttattattttcctaagacatgcaaccttca
gcacttaaagaagatacctggttcttgtgctggtggtgaggttaattttt
gatgtttcagtctgagggagaaagcattcagagatatctgattgggtcga
gactgaaccaggctatcaggtggggaggaggggaattgaggatgtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147049319_147050065
seq2: B6Ng01-034D13.b_332_1069

seq1  GTAAAGCATTTGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATG  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATG  50

seq1  AATTCTCTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCAC  100
      ||||||||||||||| || ||| ||  || ||  |||||||||||| |||
seq2  AATTCTCTGATGAATACTAAGATTGGATTGTTTGGTAAAGCATTTGTCAC  100

seq1  ATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATT  150

seq1  CTCAGACTGGTTTTATCAGTAAAGCATTTGCCACATTCACTGCATTTGTA  200
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  CTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCACTGCATTTGTA  200

seq1  AGGTTTCTCTCCTTTATGAATTCTCTGATGCATAGTAAGATTGAATTTGT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTCTCCTGTATGAATTCTCTGATGCATAGTAAGATTGAATTTGT  250

seq1  TTTTAAAACATTTGTCACATTCACTACATTTGTAAATTTTCTCTTCTGTA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTAAAACATTTGTCACATTCACTACATTTGTAAATTATCTCTTCTGTA  300

seq1  TGAATTCCCTGATGAATACTAAGATGGATCTGATGGGTAAAGCA-TTTGT  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAATTCCCTGATGAATACTAAGATGGATCTGATGGGTAAAGCATTTTGT  350

seq1  CAC-TTTTACTACTTTCGTAAGGTTTCTTTCCATGATAAATTCTCTGCTG  398
      ||| |||||||||||| ||||||||| ||||||||||||||| |||||||
seq2  CACTTTTTACTACTTTTGTAAGGTTTTTTTCCATGATAAATTTTCTGCTG  400

seq1  ACTTTGTAGTTTTTCTCTCTGGGTAAGATATTTGTGAAATTCACTACA-T  447
      |||||||||  ||||||||||||||||||||||||||||||||||||| |
seq2  ACTTTGTAG-GTTTCTCTCTGGGTAAGATATTTGTGAAATTCACTACATT  449

seq1  TTGT-AAGGGTTCCC-TGCAATATTGTCTTTTTTCACCATGAC-TTTATG  494
      |||| |||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TTGTAAAGGGTTCCCTTGCAATATTGTCTTTTTTCACCATGACTTTTATG  499

seq1  TTTAGAAACAAAAATCTT-GTCTAATTCTGCATTTCGGTTGTGTTTTTTC  543
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  TTTAGAAACAAAAATATTGGTCTAATTCTGCATTTCGGTTGTGTTTTTTC  549

seq1  TTCTGCATGTTAATTCCTTGATTGAGACTAATGGTAGAAAACAAACTTAA  593
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TTCTGCATGTTAATTCCTTGA-TGAGACTAATGGTAG-AAACAAACTTAA  597

seq1  ACTGTTTACAGAGTCATTGTATTTGCAAACTTCTTTAGTGTTCCTGGGCT  643
      |||| ||||||||||||||||||||||||||   |||||||| |||||| 
seq2  ACTG-TTACAGAGTCATTGTATTTGCAAACT--CTTAGTGTT-CTGGGC-  642

seq1  TAAGTCTTTTTTGGGTCGAGAATTGAAGAGCATCAGAGCTGTGATTAGTT  693
      ||| |||||||||| ||||| |||||||||||||| | |||||||||| |
seq2  TAAATCTTTTTTGGTTCGAG-ATTGAAGAGCATCA-AACTGTGATTAG-T  689

seq1  TTGTAAGGTGTACACTGGAGGGATTCAAGAATGACATTGCTAAGCTTGTC  743
      |||||||  |||||||| |||   ||||| |||||| |||| ||||||||
seq2  TTGTAAGTGGTACACTGAAGG--ATCAAG-ATGACA-TGCT-AGCTTGTC  734

seq1  CCAT  747
      ||||
seq2  CCAT  738

seq1: chr4_146605218_146605721
seq2: B6Ng01-034D13.g_70_573

seq1  GAATTCAATAGGTGGTTATAAATACAAAAGAAAAGAAAAGAAAAGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGTGGTTATAAATACAAAAGAAAAGAAAAGAAAAGAAAAG  50

seq1  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGAAGACCCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGAAGACCCTGAA  100

seq1  AAGAAAATGTAGTCAGGTGAATAATAATCATTCATAGAGAATGTGTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTAGTCAGGTGAATAATAATCATTCATAGAGAATGTGTGTGA  150

seq1  GACAGATTATCAGACTTGAAGATATATAGTAGGTTCTGTTGACCCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTATCAGACTTGAAGATATATAGTAGGTTCTGTTGACCCTGAGT  200

seq1  GTCCCCAGAGAAAAACCAATTTCTCCATGTGGACCAGCTTTATCAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAGAGAAAAACCAATTTCTCCATGTGGACCAGCTTTATCAGATAA  250

seq1  TACATCCTGACCAAGAGATAGACTTTGGTCACATGCTACAGGCATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTGACCAAGAGATAGACTTTGGTCACATGCTACAGGCATTTTAT  300

seq1  AGGCCATTGTAGTTTCCTATGAGGCTTTATTATTTTCCTAAGACATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTGTAGTTTCCTATGAGGCTTTATTATTTTCCTAAGACATGCAA  350

seq1  CCTTCAGCACTTAAAGAAGATACCTGGTTCTTGTGCTGGTGGTGAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCACTTAAAGAAGATACCTGGTTCTTGTGCTGGTGGTGAGGTTA  400

seq1  ATTTTTGATGTTTCAGTCTGAGGGAGAAAGCATTCAGAGATATCTGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATGTTTCAGTCTGAGGGAGAAAGCATTCAGAGATATCTGATTG  450

seq1  GGTCGAGACTGAACCAGGCTATCAGGTGGGGAGGAGGGGAATTGAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAGACTGAACCAGGCTATCAGGTGGGGAGGAGGGGAATTGAGGATG  500

seq1  TGAT  504
      ||||
seq2  TGAT  504