BAC Information

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BAC

Clone NameB6Ng01-034F04
Chromosome4 (Build37)
Map Location 36,454,076 - 36,620,292
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034F04.bB6Ng01-034F04.g
ACCDH863112DH863113
length988886
definitionDH863112|Mus musculus domesticus DNA, BAC clone: B6Ng01-034F04, 5' end.DH863113|Mus musculus domesticus DNA, BAC clone: B6Ng01-034F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,454,076 - 36,455,086)(36,619,406 - 36,620,292)
sequence
gaattcattagtaaaatggactgactaacattaactcaataaataggtaa
tagtgatatttttaaataatttcttaaataataatgtagatcttttgttt
taaatatctttaaactgttgagtaattattgagctcttggtaactgcaga
agtgagaatataataaatattatataaaagagcacaatagccctttgaaa
aacctttcttggtgattttgcaaaagctagctgtgcctttgtcgatattt
atatacacttcaattccagtaagggaatcatgaccagggcagaaattatt
tatgatagagaccattatttatgctttgacttagagggaaatatgaagat
agtctcacatggtaataatttaggagatttttgttgttgttgttcagatg
gattctttactacaaagttatctataaaatactttgcatacaatatggag
cttcagttctctatggctcttagtcagaatttagcaatttaacatgttgt
tttgtatatttaccaatttgagccatgaggctataagacaacttcaaaat
ctctttattcagttacccaactatactatcactcatccttctctcccctt
ttcaaagattacagaaattctcagctactatatgagaaggaagaagaaga
ttggggagtatgagactccaatatgataggctaagtctcccattctggca
tttgaggaaagtagttaattttatctgtgtgatactttattcccagtaca
taaaaaggagatgatgcattctggaaactccgcctcccagttgggttggg
gccagttagattcttggctcacctccaagatcagaacttaaattgtgaac
aactgagatctgcttaaggaataggaatgctttgccctaggctcaaattt
agagtactcaaccgaccctaggcagcagatgtcccagagagctgacccag
ggacaagcacatgtgaagatggcttagcacttctggaa
gaattcctatcctcattggggcccttaatccttccttctagtcttccaca
agagtccccaagctccatccacatctggctgtgggtgtctacatctgtct
gagtcagcctctgagtggagcctctcagaggacaaaatgttcctttaggt
ttggttctgaagtctcacttctgatgaaggtggagggagaggcaaagaat
ggaagtccccctgagatagcaggctgccaagggccctaagccaaactttt
aatgcaaaaactataagggtaaagattgtatcatacagattttgcattta
atttacttctgtgaaaaacatttctataaagattctctgactttctaatt
tatcatttatataaactatagatctgatatactcttcaacatcagagatg
gcatattagatggagaagaatgtacagaaattaattgacaaaattgtgca
ttccctctgcctccaccatgattattccttggagaaagttttgatctact
attaatctgtataggttgttttaagcaatcttaaaacttaaattggaatt
ttaatttagtttcaaataagctttataatagataatttttatatgttggt
atttatctttttattttaaaaatatttttaaatattttattaggtatttt
cctcatttacatttccaatgctatcccaaaagtcgcccataccctccccc
cgccccaaccccctacccacccactcccactttttggccctggcattccc
ctgtactggggcatataaagtttgcaagaccaatgggcctctctttccag
tgatggccaactaggccatcttctgatacatatgcagctagagacacgag
ctccggggtactggttatatataatgttgttccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36454076_36455086
seq2: B6Ng01-034F04.b_47_1034

seq1  GAATTCATTAGTAAAATGGACTGACTAACATTAACTCAATAAATAGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTAAAATGGACTGACTAACATTAACTCAATAAATAGGTAA  50

seq1  TAGTGATATTTTTAAATAATTTCTTAAATAATAATGTAGATCTTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATATTTTTAAATAATTTCTTAAATAATAATGTAGATCTTTTGTTT  100

seq1  TAAATATCTTTAAACTGTTGAGTAATTATTGAGCTCTTGGTAACTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTTTAAACTGTTGAGTAATTATTGAGCTCTTGGTAACTGCAGA  150

seq1  AGTGAGAATATAATAAATATTATATAAAAGAGCACAATAGCCCTTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAATATAATAAATATTATATAAAAGAGCACAATAGCCCTTTGAAA  200

seq1  AACCTTTCTTGGTGATTTTGCAAAAGCTAGCTGTGCCTTTGTCGATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCTTGGTGATTTTGCAAAAGCTAGCTGTGCCTTTGTCGATATTT  250

seq1  ATATACACTTCAATTCCAGTAAGGGAATCATGACCAGGGCAGAAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACTTCAATTCCAGTAAGGGAATCATGACCAGGGCAGAAATTATT  300

seq1  TATGATAGAGACCATTATTTATGCTTTGACTTAGAGGGAAATATGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGAGACCATTATTTATGCTTTGACTTAGAGGGAAATATGAAGAT  350

seq1  AGTCTCACATGGTAATAATTTAGGAGATTTTTGTTGTTGTTGTTCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACATGGTAATAATTTAGGAGATTTTTGTTGTTGTTGTTCAGATG  400

seq1  GATTCTTTACTACAAAGTTATCTATAAAATACTTTGCATACAATATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTACTACAAAGTTATCTATAAAATACTTTGCATACAATATGGAG  450

seq1  CTTCAGTTCTCTATGGCTCTTAGTCAGAATTTAGCAATTTAACATGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTCTCTATGGCTCTTAGTCAGAATTTAGCAATTTAACATGTTGT  500

seq1  TTTGTATATTTACCAATTTGAGCCATGAGGCTATAAGACAACTTCAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTTACCAATTTGAGCCATGAGGCTATAAGACAACTTCAAAAT  550

seq1  CTC-TTATTCAGTTACCCAACTATACTATCACTCATCCTTCTCTCCCC-T  598
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTTTATTCAGTTACCCAACTATACTATCACTCATCCTTCTCTCCCCTT  600

seq1  TTCAAAGATTACAGAAATTCTCAGCTACTATATGAGAAGGAAGAAAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCAAAGATTACAGAAATTCTCAGCTACTATATGAGAAGGAAG-AAGAAG  649

seq1  ATTGGAGAGTATGAGACTCTAATATGATAGGCTAAGTCTCCCATTCTGGC  698
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTGGGGAGTATGAGACTCCAATATGATAGGCTAAGTCTCCCATTCTGGC  699

seq1  ATTTGAGGAAAGTTAGTT-ATTTTATCTGTGTGATACTTTATTCCCAGTA  747
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  ATTTGAGGAAAG-TAGTTAATTTTATCTGTGTGATACTTTATTCCCAGTA  748

seq1  CATAAAAAGGAGATGATGCATTCTGGAAAACTCCGTCTTCCCAGTTTGGT  797
      |||||||||||||||||||||||||| |||||||| | |||||||| |||
seq2  CATAAAAAGGAGATGATGCATTCTGG-AAACTCCG-CCTCCCAGTTGGGT  796

seq1  TGGGGCCCAGTATAGGATTCTTGGTCTCAGCCTCCAAGATACAAGATCTT  847
      ||||| ||||| || ||||||||| |||| ||||||||||   ||| |||
seq2  TGGGG-CCAGT-TA-GATTCTTGG-CTCA-CCTCCAAGAT--CAGAACTT  839

seq1  AAATTGTAGAACAAACTGAGATCTGCATAAGGAATCAGGAAGTGCTCTGC  897
      ||||||| |||| ||||||||||||| |||||||| ||||| |||| |||
seq2  AAATTGT-GAAC-AACTGAGATCTGCTTAAGGAAT-AGGAA-TGCTTTGC  885

seq1  CCATGGCTCAAAATTTAGAGTTACTCAACCGAACCATAGGGCAGCAAGAT  947
      ||  ||||| |||||||||| |||||||||| ||| || |||||| ||||
seq2  CCTAGGCTC-AAATTTAGAG-TACTCAACCG-ACCCTA-GGCAGC-AGAT  930

seq1  GTCCCAGGAGAGCTGACCCCAGGGAACAAAGCACATGTGAAGTAGTGCTT  997
      |||||| ||||||||| ||||||||   ||||||||||||||   ||  |
seq2  GTCCCA-GAGAGCTGA-CCCAGGGA--CAAGCACATGTGAAG--ATGGCT  974

seq1  TAGCACTTCTGGAA  1011
      ||||||||||||||
seq2  TAGCACTTCTGGAA  988

seq1: chr4_36619406_36620292
seq2: B6Ng01-034F04.g_69_954 (reverse)

seq1  GGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAG  50
      |||||||||||||||| |  |||||||||||||||||||| || ||||||
seq2  GGTGGAACAACATTAT-ATATAACCAGTACCCCGGAGCTCGTGTCTCTAG  49

seq1  CTGCATATGTATCAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGG  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGG  99

seq1  CCCACTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGG  150
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGG  149

seq1  CCAAAAAGTGGGAGTGGGTGGGTAGGGGGTTGGGGCGGGGGGAGGGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGTGGGAGTGGGTGGGTAGGGGGTTGGGGCGGGGGGAGGGTATG  199

seq1  GGCGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATA  249

seq1  AAATATTTAAAAATATTTTTAAAATAAAAAGATAAATACCAACATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAAAATATTTTTAAAATAAAAAGATAAATACCAACATATAAA  299

seq1  AATTATCTATTATAAAGCTTATTTGAAACTAAATTAAAATTCCAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTATTATAAAGCTTATTTGAAACTAAATTAAAATTCCAATTTAA  349

seq1  GTTTTAAGATTGCTTAAAACAACCTATACAGATTAATAGTAGATCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGATTGCTTAAAACAACCTATACAGATTAATAGTAGATCAAAAC  399

seq1  TTTCTCCAAGGAATAATCATGGTGGAGGCAGAGGGAATGCACAATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAAGGAATAATCATGGTGGAGGCAGAGGGAATGCACAATTTTGT  449

seq1  CAATTAATTTCTGTACATTCTTCTCCATCTAATATGCCATCTCTGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATTTCTGTACATTCTTCTCCATCTAATATGCCATCTCTGATGTT  499

seq1  GAAGAGTATATCAGATCTATAGTTTATATAAATGATAAATTAGAAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTATATCAGATCTATAGTTTATATAAATGATAAATTAGAAAGTCA  549

seq1  GAGAATCTTTATAGAAATGTTTTTCACAGAAGTAAATTAAATGCAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTTTATAGAAATGTTTTTCACAGAAGTAAATTAAATGCAAAATC  599

seq1  TGTATGATACAATCTTTACCCTTATAGTTTTTGCATTAAAAGTTTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATACAATCTTTACCCTTATAGTTTTTGCATTAAAAGTTTGGCTT  649

seq1  AGGGCCCTTGGCAGCCTGCTATCTCAGGGGGACTTCCATTCTTTGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTTGGCAGCCTGCTATCTCAGGGGGACTTCCATTCTTTGCCTCT  699

seq1  CCCTCCACCTTCATCAGAAGTGAGACTTCAGAACCAAACCTAAAGGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACCTTCATCAGAAGTGAGACTTCAGAACCAAACCTAAAGGAACA  749

seq1  TTTTGTCCTCTGAGAGGCTCCACTCAGAGGCTGACTCAGACAGATGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTCTGAGAGGCTCCACTCAGAGGCTGACTCAGACAGATGTAGA  799

seq1  CACCCACAGCCAGATGTGGATGGAGCTTGGGGACTCTTGTGGAAGACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGCCAGATGTGGATGGAGCTTGGGGACTCTTGTGGAAGACTAG  849

seq1  AAGGAAGGATTAAGGGCCCCAATGAGGATAGGAATTC  887
      |||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGATTAAGGGCCCCAATGAGGATAGGAATTC  886