MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-034G08
Chromosome	4 (Build37)
Map Location	101,792,875 - 101,793,934
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream gene	Pde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Raver2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242570 MGI:2443623
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Jak1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16451 MGI:96628
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E130102H24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77866 MGI:1925116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs

name	Ak3l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11639 MGI:87979
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669460 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669460
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Dnajc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72685 MGI:1919935
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Leprot (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230514 MGI:2687005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lepr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16847 MGI:104993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	B020004J07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545662 MGI:3588238
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665362 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665362
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 34 ESTs, 11 Proteins pseudo : _no_value

name	C130073F10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242574 MGI:3045359
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 1 Protein

name	LOC384033 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384033
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	LOC381535 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:381535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 43 Proteins

name	LOC332923 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:332923
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 36 Proteins

name	LOC100039834 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	LOC381536 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:381536
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	LOC433739 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 195 ESTs, 14 Proteins pseudo : _no_value

name	Pde4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18578 MGI:99557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sgip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73094 MGI:1920344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tctex1d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67344 MGI:1914594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Insl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23919 MGI:1346085
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr78 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242584 MGI:2385328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mier1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71148 MGI:1918398
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Raver2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33942105 GeneID:242570 MGI:2443623
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribonucleoprotein, PTB-binding 2 transcript_id : NM_183024.1

name	Jak1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111607495 GeneID:16451 MGI:96628
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Janus kinase 1 transcript_id : NM_146145.2

name	E130102H24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252800 GeneID:77866 MGI:1925116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs product : RIKEN cDNA E130102H24 gene transcript_id : XM_001472210.1

name	Ak3l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364376 GeneID:11639 MGI:87979
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 3 alpha-like 1 transcript_id : NM_009647.3

name	LOC669460 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252802 GeneID:669460
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical LOC669460 transcript_id : XM_001472355.1

name	Dnajc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38259193 GeneID:72685 MGI:1919935
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily C, member 6 transcript_id : NM_198412.1

name	Leprot (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367936 GeneID:230514 MGI:2687005
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leptin receptor overlapping transcript transcript_id : NM_175036.3

name	Lepr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8567369 GeneID:16847 MGI:104993
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leptin receptor transcript_id : NM_010704.1

name	Lepr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28077100 GeneID:16847 MGI:104993
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leptin receptor transcript_id : NM_146146.1

name	B020004J07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356022 GeneID:545662 MGI:3588238
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B020004J07 gene transcript_id : NM_001033790.2

name	LOC381535 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252817 GeneID:381535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 43 Proteins product : novel protein similar to Prame proteins transcript_id : XM_355503.6

name	LOC332923 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252805 GeneID:332923
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 36 Proteins product : novel protein similar to Prame proteins transcript_id : XM_285828.6

name	LOC100039834 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252818 GeneID:100039834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : hypothetical protein LOC100039834 transcript_id : XM_001473634.1

name	LOC381536 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372159 GeneID:381536
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : novel protein similar to Prame proteins transcript_id : XM_355504.4

name	Pde4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181197 GeneID:18578 MGI:99557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 4B, cAMP specific transcript_id : NM_019840.2

name	Sgip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21536263 GeneID:73094 MGI:1920344
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3-domain GRB2-like (endophilin) interacting protein 1 transcript_id : NM_144906.1

name	Tctex1d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371576 GeneID:67344 MGI:1914594
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Tctex1 domain containing 1 transcript_id : NM_026100.2

name	Insl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803022 GeneID:23919 MGI:1346085
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin-like 5 transcript_id : NM_011831.2

name	Wdr78 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922612 GeneID:242584 MGI:2385328
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 78 transcript_id : NM_146254.2

name	Mier1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872226 GeneID:71148 MGI:1918398
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mesoderm induction early response 1 homolog (Xenopus laevis transcript_id : NM_027696.2

name	Mier1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872224 GeneID:71148 MGI:1918398
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mesoderm induction early response 1 homolog (Xenopus laevis transcript_id : NM_001039081.1

name	Raver2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33942106 CCDS:CCDS18392.1 GeneID:242570 MGI:2443623
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : novel protein containing an RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) product : raver2 protein_id : NP_898845.1

name	Jak1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111607496 CCDS:CCDS18393.1 GeneID:16451 MGI:96628
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004718 - Janus kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : Janus kinase 1 protein_id : NP_666257.2

name	E130102H24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252801 GeneID:77866 MGI:1925116
definition	codon_start : 1 product : hypothetical protein LOC77866 protein_id : XP_001472260.1

name	Ak3l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753022 CCDS:CCDS18394.1 GeneID:11639 MGI:87979
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 product : adenylate kinase 4 protein_id : NP_033777.1

name	LOC669460 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252803 GeneID:669460
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472405.1

name	Dnajc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38259194 CCDS:CCDS18395.1 GeneID:72685 MGI:1919935
definition	GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 note : auxilin; DnaJ (Hsp40) homolog, subfamily B, member 6 product : DnaJ (Hsp40) homolog, subfamily C, member 6 protein_id : NP_940804.1

name	Leprot (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077089 CCDS:CCDS18396.1 GeneID:230514 MGI:2687005
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : leptin receptor gene-related protein product : leptin receptor overlapping transcript protein_id : NP_778201.1

name	Lepr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077101 GeneID:16847 MGI:104993
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence TAS] GO_process : GO:0019222 - regulation of metabolism [Evidence TAS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 exception : unclassified translation discrepancy note : isoform 1 is encoded by transcript variant 1; OB receptor; leptin receptor gene-related protein product : leptin receptor isoform 1 protein_id : NP_666258.1

name	Lepr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8567370 CCDS:CCDS18397.1 GeneID:16847 MGI:104993
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence TAS] GO_process : GO:0019222 - regulation of metabolism [Evidence TAS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; OB receptor; leptin receptor gene-related protein product : leptin receptor isoform 2 protein_id : NP_034834.1

name	B020004J07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702111 GeneID:545662 MGI:3588238
definition	codon_start : 1 note : novel protein similar to Prame proteins product : hypothetical protein LOC545662 protein_id : NP_001028962.1

name	LOC381535 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82894393 GeneID:381535
definition	codon_start : 1 product : hypothetical protein protein_id : XP_355503.3

name	LOC332923 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:38078613 GeneID:332923
definition	codon_start : 1 product : hypothetical protein protein_id : XP_285828.2

name	LOC100039834 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252819 GeneID:100039834
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473684.1

name	LOC381536 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:51709355 GeneID:381536
definition	codon_start : 1 product : hypothetical protein protein_id : XP_355504.2

name	Pde4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181198 CCDS:CCDS18403.1 GeneID:18578 MGI:99557
definition	GO_function : GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence ISS]; GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA]; GO:0006939 - smooth muscle contraction [Evidence IMP] codon_start : 1 note : T-cell receptor beta chain Vb2-Jb1.4 product : phosphodiesterase 4B, cAMP specific protein_id : NP_062814.2

name	Sgip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21536264 CCDS:CCDS18404.1 GeneID:73094 MGI:1920344
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0008907 - integrase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0015074 - DNA integration [Evidence IEA] codon_start : 1 product : SH3-domain GRB2-like (endophilin) interacting protein 1 protein_id : NP_659155.1

name	Tctex1d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385604 CCDS:CCDS18405.1 GeneID:67344 MGI:1914594
definition	codon_start : 1 product : Tctex1 domain containing 1 protein_id : NP_080376.1

name	Insl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754358 CCDS:CCDS18406.1 GeneID:23919 MGI:1346085
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] GO_process : GO:0007582 - physiological process [Evidence IEA] codon_start : 1 note : relaxin/insulin-like factor 2 product : insulin-like 5 protein_id : NP_035961.1

name	Wdr78 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922613 GeneID:242584 MGI:2385328
definition	codon_start : 1 product : WD repeat domain 78 protein_id : NP_666366.2

name	Mier1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872227 CCDS:CCDS18408.1 GeneID:71148 MGI:1918398
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : mesoderm induction early response 1 isoform a protein_id : NP_081972.2

name	Mier1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872225 GeneID:71148 MGI:1918398
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : mesoderm induction early response 1 isoform b protein_id : NP_001034170.1

name	LOC384033 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384033
definition	number : 3 pseudo : _no_value

name	LOC384033 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384033
definition	number : 2 pseudo : _no_value

name	LOC384033 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384033
definition	number : 1 pseudo : _no_value

name	LOC665362 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252804 GeneID:665362
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 34 ESTs, 11 Proteins product : similar to growth factor receptor bound protein 2 pseudo : _no_value transcript_id : XR_030790.1

name	C130073F10Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149252816 GeneID:242574 MGI:3045359
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 1 Protein product : RIKEN cDNA C130073F10 gene transcript_id : XR_035215.1

name	LOC433739 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252806 GeneID:433739
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 195 ESTs, 14 Proteins product : similar to RNA binding motif protein 10 pseudo : _no_value transcript_id : XR_030819.1

clone name	MSMg01-394D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383N18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-501K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350L22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-175K04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-129P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449A11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-299F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088J02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-499H21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-290A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406H14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-382E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341N11
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-034G08.b	B6Ng01-034G08.g
ACC	DH863162	DH863163
length	1,043	1,161
definition	DH863162\|Mus musculus domesticus DNA, BAC clone: B6Ng01-034G08, 5' end.	DH863163\|Mus musculus domesticus DNA, BAC clone: B6Ng01-034G08, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattccaagggccagtcagatagcctgacagagtacagatgccagatac agtatacccagacatagtggagacggccatgggctgggcagtgcatgatc caaccaggaaatagctcagttagattctaagctcgttactcaagtctggt aattagtaaatccactgtgctaagggaagccagattgtttgtagaggtat atgtaatcgctggtaactaattctactccttccttgaactgctgtgcaca tgaaggtatcagtggctcagaggcagaccatggatctgtagatcatagat gctggtctattgtagcacaaagttctcagaaaacatttttcaaatatggc aaaattaggccaaaggcaattcctctggtggtgtcattaaggtagccagt gcatacaaagagcagagacctttccattggaagctctgagaagatgagag tgtgcttcccttcttgctcattcggacttgatataggtcgtccccagcct ggcttgtctggactgatgcctgatcacttcccagtctcagtttattcttc ctgctttcagagatcttatttaaagggttaagatttctctgcgttaattt catatctctttgttcataaaagttgcaaccgtgcttgcactgaactccgt ggaaggcagtatcaactgttcaggaacttgtaaacagctcagaattgctc tgggaaagctctctttggaaaactgggaggagtgatttctgtttgccaat ttagacatggtttcccatccaataaaacattagaccaataaacatgcatg taggaaaagaaaacaaaatcaactgtaatacctcccactcctggggttcc ccttgtttctttaaaattcctgctggatctgttatgagctagccattaat gtaatcaagaagtacatattttttctatactgacacataaatatacaaac ctatatttttatggagcttaattctaaggcagagagacaactgaccacta tgttttggtaatgtttctaccctttcagggtgaggctctgaat	gaattctcacctttaggaataccgaatggcagaaaaacacctgaaaaaat gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga ttccacttcactccagtcagaatgtctaagatcaaaaactcaggtgacag cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt gagattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc agaaaattggacatagtactaccggaggatcccgcaatacctctcctggg catatatccagaagatgtcccaaccggtaagaaggacacatgctccatta tgttcatagcagccttatttataatagccagaagctggaaagaacccaga tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat ggaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaa atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa ggaactcgcacaatatgtactcactgataagtggatattagcccagaaac ttaggatacccaagatataagatacaacttgccaaatgcatgaaattcaa gaagaatgaagaccaaagcgtggacactttaccctttcttagaaatggga acaaaacacacatggaaggagttacagagacaaatttggagctgtgacga aaggatggaccatctagtgattgccatatgcagggatccatcccataatc agcttccaaatgctgacaccattgcatacactagcagattttgctgaaag gacccagatatagccctctcttgtgagactatgccagggcctagcaaaca cagaagtggatgctcacagtcagctatttggatgggtcacacgccccaat ggagagctagagaatacccaaggagctaaggtaactgcacccttagtgac aacatatgaactacctgtacccgagctctgtctcagctgctatgttcaaa agtaggccctagccgcatcactgcaagagagtccattgggactgcaactt taatgcccagtcacggggatggcaggccaaaaagttagagtggggtgggg ttggcgaattg
quality values	Open. Hide. 47 30 39 40 61 53 33 22 43 61 61 61 61 43 24 61 61 47 38 47 61 40 61 61 61 61 61 28 12 36 14 12 20 11 18 12 13 24 43 59 59 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 55 31 59 37 26 37 28 30 37 50 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 28 61 45 59 59 45 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 52 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 47 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 49 55 55 50 55 50 50 50 37 61 43 47 61 61 61 61 61 61 61 55 61 61 61 50 61 61 61 61 61 61 61 61 61 36 61 61 50 61 31 61 61 39 61 61 61 61 47 61 61 61 61 61 61 61 61 61 61 53 53 61 53 61 61 29 53 50 53 45 53 61 61 61 61 61 42 61 50 61 61 52 61 61 61 53 53 61 61 61 61 61 52 61 61 61 61 47 53 53 47 57 45 57 53 57 57 53 53 53 57 57 45 57 53 57 53 57 53 53 45 45 53 53 53 53 53 53 50 45 53 57 53 57 53 50 53 57 52 52 38 57 57 53 53 53 47 46 57 52 52 57 57 52 30 40 53 24 33 39 40 21 19 37 39 53 47 39 53 50 53 57 47 34 47 45 57 37 53 31 57 52 52 53 53 33 53 53 45 53 50 45 53 31 57 37 28 25 52 45 36 46 50 53 42 57 57 52 19 27 35 29 26 15 57 57 23 29 45 41 35 38 26 29 33 57 42 32 52 40 39 39 38 20 19 26 34 47 37 37 38 53 29 38 30 38 53 37 53 38 32 41 22 38 38 40 38 30 38 25 35 44 42 53 28 47 42 24 10 29 28 22 13 20 39 33 23 29 57 52 37 25 27 31 44 37 14 7 8 52 31 30 33 28 41 36 31 41 57 31 11 57 14 18 40 41 31 41 32 11 57 28 28 40 40 57 57 20 24 34 33 57 37 29 18 41 40 23 37 34 29 18 57 48 48 37 48 25 57 14 31 28 34 30 17 18 46 17 18 13 32 32 26 33 31 51 25 51 31 34 47 30 21 28 25 48 21 39 34 38 51 51 30 30 26 38 23 31 13 38 18 25 19 23 35 39 47 37 20 20 18 31 10 16 4 13 15 23 32 31 41 45 47 33 23 41 33 29 31 17 15 26 39 21 31 33 33 20 26 16 41 17 51 18 25 28 29 29 34 39 51 24 29 29 26 25 29 22 24 37 46 13 9 15 18 28 29 16 24 23 33 20 51 31 9 9 46 51 27 46 46 39 17 29 29 39 17 29 22 28 46 14 28 28 19 17 30 33 6 19 15 29 17 7 16 12 19 16 26 26 11 28 30 26 24 17 10 7 21 8 27 21 18 26 13 29 32 34 20 13 10 7 18 24 26 51 51 51 51 28 28 21 43 21 23 23 31 10 8 15 30 31 16 6 7 46 22 30 23 12 18 20 22 46 17 51 20 14 23 14 24 30 46 46 51 28 12 9 33 11 12 20 25 28 14 33 23 9 19 12 8 17 18 22 29 6 5 5 30 11 28 10 8 8 14 19 17 21 28 6 6 5 8 26 27 12 4 5 13 28 30 23 29 25 10 20 9 6 7 12 10 24 10 5 5 7 10 13 12 9 8 8 4 4 30 11 8 18 9 13 20 7 17 6 9 11 20 7 7	Open. Hide. 55 55 37 55 19 12 12 13 10 9 9 8 10 7 7 9 28 34 41 49 43 49 52 49 52 52 55 59 59 49 52 41 59 49 52 52 52 59 45 52 43 44 55 59 59 59 59 59 59 59 59 41 37 40 27 28 36 37 52 59 61 59 59 59 59 59 59 59 59 59 59 52 61 59 59 59 59 59 61 59 59 59 59 59 59 59 52 59 59 59 59 59 61 61 59 59 59 59 36 59 59 59 59 59 52 59 59 59 59 49 59 59 59 59 52 45 59 52 45 43 59 52 59 61 59 59 61 49 59 39 61 59 52 52 52 59 59 52 59 59 59 59 36 59 55 59 61 59 52 52 52 43 36 59 59 59 59 59 59 59 59 52 59 41 43 59 59 59 59 59 59 61 59 61 59 59 52 59 49 59 61 59 59 52 59 55 59 59 55 59 59 49 59 59 59 52 59 59 59 59 59 59 45 59 52 52 59 59 49 36 61 59 59 59 59 59 52 59 52 59 52 59 39 59 59 59 59 59 59 59 59 52 52 49 39 27 49 59 59 59 59 49 52 59 59 59 61 59 59 59 49 35 55 59 59 59 59 59 59 52 59 59 49 59 45 39 43 52 59 59 52 59 59 59 55 55 59 61 59 59 59 59 59 49 52 49 52 59 59 61 61 61 61 61 61 59 59 59 59 59 52 52 59 59 59 59 61 59 59 45 39 59 41 27 59 43 52 59 59 59 59 49 49 59 59 59 59 45 41 43 36 59 59 52 55 59 59 52 59 45 59 59 61 59 59 59 52 59 59 61 61 61 61 59 61 59 59 59 52 59 59 49 59 61 59 59 59 61 61 59 59 59 59 59 59 59 59 59 59 41 43 59 59 43 52 52 52 52 52 43 43 36 52 49 49 52 55 52 43 61 55 61 61 61 61 61 55 55 52 52 55 52 52 61 52 55 61 55 55 61 61 49 55 55 55 43 43 55 52 52 55 55 61 55 61 55 52 55 55 50 61 61 55 55 61 50 55 50 55 55 55 49 55 47 55 50 55 50 50 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 55 55 55 47 61 61 55 61 55 55 50 55 61 61 55 61 53 61 53 47 50 50 50 61 50 53 53 61 61 61 43 53 52 50 50 47 32 50 47 50 43 43 50 36 50 50 53 50 23 29 13 10 24 24 43 50 33 37 50 52 42 27 27 29 35 45 50 50 38 42 50 28 47 50 39 43 45 53 35 52 40 43 39 45 39 43 61 61 61 47 61 53 53 45 39 42 43 33 42 28 42 35 36 50 43 50 45 34 40 43 38 34 45 45 47 33 34 47 36 38 53 35 34 33 16 39 37 32 30 47 47 39 26 38 28 53 45 28 52 28 46 42 53 45 50 52 32 45 50 47 47 47 45 45 38 38 45 43 42 38 45 53 53 53 47 30 21 57 53 38 47 45 53 28 22 53 38 38 47 53 46 37 45 50 50 27 39 33 34 45 39 40 57 22 47 38 34 37 52 52 52 23 37 46 52 37 17 16 23 14 7 13 26 52 53 41 52 53 53 46 35 42 50 24 46 30 53 38 33 37 23 41 34 45 53 53 52 34 16 41 45 32 24 13 12 30 20 23 52 31 30 38 53 53 53 42 52 35 50 24 53 27 52 42 38 38 40 32 36 21 34 32 31 39 53 23 24 53 27 30 21 26 20 38 35 36 35 28 32 37 31 24 23 27 21 22 18 10 19 21 27 36 21 27 46 19 9 11 44 53 19 33 21 57 22 36 31 32 27 25 48 28 25 28 39 38 33 37 31 57 29 29 53 35 36 33 25 20 20 24 53 25 33 27 22 30 16 14 21 40 21 53 29 15 18 22 37 15 30 21 47 47 48 38 35 35 27 30 28 20 23 29 27 28 38 26 12 20 21 22 14 30 13 24 31 48 30 32 32 29 18 20 5 7 12 24 29 19 34 16 29 25 29 29 31 25 16 20 45 25 29 37 23 7 11 29 19 29 29 24 13 29 13 9 12 43 22 29 15 33 9 11 21 20 28 41 17 28 6 9 18 23 13 17 28 24 13 25 43 7 12 10 24 14 29 17 30 24 15 11 27 14 9 20 20 46 46 43 16 20 7 10 14 21 8 20 14 29 13 10 15 31 10 40 21 21 7 28 43 39 19 22 22 14 12 8 28 25 31 51 22 19 12 15 23 20 16 28 16 46 12 28 7 8 10 16 36 8 29 11 7 9 12 9 14 10 15 21 23 26 23 19 6 30 12 27 13 22 8 25 34 38 18 7 5 6 13 13 8 11 5 5 21 15 13 12 19 21 26 26 17 6 10 4 7 7 5 4 11 27 29 13 6 11 11 5 35 9 30 8 13 5 4 7 8 6 5 4 10 10 6 12 13 4 8 12 17 8 6 5 7 21 8 26 16 6 29 12 9 12 8 11 10 23 17 6 3 5 5 5 21 14 4 4 14 5 4 28 30 6 11 5 4 7 8 23 13 9 5 9 4 5 7 4 3 2 6 7 5 6 9 24 23 18 5 4 4 4 6 6 6 7 26 26 20 7 10 9 26 26 20 4 7 5 19 8 15 7 17 6 5 3

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_101792875_101793934
seq2: B6Ng01-034G08.b_45_1087 (reverse)

seq1  ATTCAGAGCCTCACCCTAGATATGTGCTTGATAAACATTTACCAAAACAC  50
      |||||||||||||||||  |   ||     | ||||| ||||||||||| 
seq2  ATTCAGAGCCTCACCCTGAAAGGGT-----AGAAACA-TTACCAAAACA-  43

seq1  TAGTGTGTCAGTTTGTCTCTCTGCCTTAGAATTTAAGCTCCATAAAAATA  100
      ||||| ||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TAGTG-GTCAG-TTGTCTCTCTGCCTTAGAA-TTAAGCTCCATAAAAATA  90

seq1  TAGGGTTTGTTATATTTATTGTTGTCAGTATTAGAAAAAATATGTACTTC  150
      || |||||| |||||||||   |||||||| |||||||||||||||||||
seq2  TA-GGTTTG-TATATTTAT--GTGTCAGTA-TAGAAAAAATATGTACTTC  135

seq1  TTGAATACATTAATGGCTAGCTCATAACAGATCCAGCAGGAATTTTAAAA  200
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATTACATTAATGGCTAGCTCATAACAGATCCAGCAGGAATTTT-AAA  184

seq1  GAAAACAAGGGAAACCCAGGAGTGGGAGGTATTACAGTTGATTTTGTTTT  250
      ||||  | ||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGGGGAACCCCAGGAGTGGGAGGTATTACAGTTGATTTTGTTTT  234

seq1  CTTTTCCTACCTTGCATGTTTTATTGGTCTAATGTTTTATTGGATGGGAA  300
      ||||||||| | |||||| |||||||||||||||||||||||||||||||
seq2  CTTTTCCTA-CATGCATG-TTTATTGGTCTAATGTTTTATTGGATGGGAA  282

seq1  ACCATGTCT-AATTGGCAAACAGAAATCACTCCTCCCAGTTTTCCAAAGA  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTAAATTGGCAAACAGAAATCACTCCTCCCAGTTTTCCAAAGA  332

seq1  GAGC-TTCCCAGAGCAATTCCTGAGCTGTTTACAAGTTCCTGAACAGTTG  398
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGCTTTCCCAGAGCAATT-CTGAGCTGTTTACAAGTTCCTGAACAGTTG  381

seq1  ATACTGCCTTCCACGGAGTTCAGTGCAAGCACGGTTGCAACTTTTATGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCCTTCCACGGAGTTCAGTGCAAGCACGGTTGCAACTTTTATGAA  431

seq1  CAAAGAGATATGAAATTAACGCAGAGAAATCTTAACCCTTTAAATAAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATATGAAATTAACGCAGAGAAATCTTAACCCTTTAAATAAGAT  481

seq1  CTCTGAAAGCAGGAAGAATAAACTGAGACTGGGAAGTGATCAGGCATCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGCAGGAAGAATAAACTGAGACTGGGAAGTGATCAGGCATCAG  531

seq1  TCCAGACAAGCCAGGCTGGGGACGACCTATATCAAGTCCGAATGAGCAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAAGCCAGGCTGGGGACGACCTATATCAAGTCCGAATGAGCAAG  581

seq1  AAGGGAAGCACACTCTCATCTTCTCAGAGCTTCCAATGGAAAGGTCTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGCACACTCTCATCTTCTCAGAGCTTCCAATGGAAAGGTCTCTG  631

seq1  CTCTTTGTATGCACTGGCTACCTTAATGACACCACCAGAGGAATTGCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTATGCACTGGCTACCTTAATGACACCACCAGAGGAATTGCCTT  681

seq1  TGGCCTAATTTTGCCATATTTGAAAAATGTTTTCTGAGAACTTTGTGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAATTTTGCCATATTTGAAAAATGTTTTCTGAGAACTTTGTGCTA  731

seq1  CAATAGACCAGCATCTATGATCTACAGATCCATGGTCTGCCTCTGAGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACCAGCATCTATGATCTACAGATCCATGGTCTGCCTCTGAGCCA  781

seq1  CTGATACCTTCATGTGCACAGCAGTTCAAGGAAGGAGTAGAATTAGTTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCTTCATGTGCACAGCAGTTCAAGGAAGGAGTAGAATTAGTTAC  831

seq1  CAGCGATTACATATACCTCTACAAACAATCTGGCTTCCCTTAGCACAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATTACATATACCTCTACAAACAATCTGGCTTCCCTTAGCACAGTG  881

seq1  GATTTACTAATTACCAGACTTGAGTAACGAGCTTAGAATCTAACTGAGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTAATTACCAGACTTGAGTAACGAGCTTAGAATCTAACTGAGCT  931

seq1  ATTTCCTGGTTGGATCATGCACTGCCCAGCCCATGGCCGTCTCCACTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGGTTGGATCATGCACTGCCCAGCCCATGGCCGTCTCCACTATG  981

seq1  TCTGGGTATACTGTATCTGGCATCTGTACTCTGTCAGGCTATCTGACTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTATACTGTATCTGGCATCTGTACTCTGTCAGGCTATCTGACTGG  1031

seq1  CCCTTGGAATTC  1060
      ||||||||||||
seq2  CCCTTGGAATTC  1043

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Alignment Information