BAC Information

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BAC

Clone NameB6Ng01-034I16
Chromosome4 (Build37)
Map Location 145,593,070 - 145,730,525
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034I16.bB6Ng01-034I16.g
ACCDH863264DH863265
length978874
definitionDH863264|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I16, 5' end.DH863265|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,729,540 - 145,730,525)(145,593,070 - 145,593,947)
sequence
gaattcatacaggagagataccttacaaatagtttgtatgtgacaaatac
aatacaatgtcagtctgagaaatcatcagtttttaatacagtagagaata
tttataaatgaagtgaacgagacaatcctttaccaagatatatcatctta
aaaatcattagagaatacttacagaagagaaacttttcaattatatcaaa
ggtatgaatcctttactcttggcctatttcctagaatgttaacagtgaat
acttacaggatacaaacttaactcatgcattgtatcaagaaatatctttg
acttcatttcaggtcaaagagaatatctaataactttttaggggaaagta
tttctgttggggaaagtgtggcctgtgttttattcacgttctattcttga
caacaattgttgctccacactagagaattagtatgattatgaaaatcatg
tgaaaactttcatgcaatgttcaaatcttaaataatgtcaactatttttt
gcttgaagaaactctgaaaatgtaaaaatgtagaaagcttttcatgatac
ctttttacttgttcacccttaaatgttacaagatgaagacaagttgggaa
gtgaggagatattattgtgtaacacattcattgagacagaaataatccat
ttcaaaaggaaactatttaaggtctttaatgcagtcctcaaaatatctaa
taaaactggtaacattctgtatatttaattcaaatgagccaattgagaaa
attatacttaaaagaatatctggcaaactgagccacccagacagcatatt
ctttatcctataaatatgcttacagatgtgaagtgtgcttcgagtattca
gtaataataattcttctcaaatgcttgttcacattatagataacactgat
cattatttcccatttttgaacgaaagtctataagtctctgaaaatgctga
ccgtggaacattatacaagacattgtgg
gaattccaggatagccagggctatacagagaaaccctgtctcaaaaaaac
aaaaacaaaaacaaaaaacaaaaacaaagaaacaaacaaacaaaaaaacc
tgtctcaaaaaacaaacaaagaacaacaacaaaacaacaaaaagaaagta
tcatcattgcagcttccacaatcacaggtcactttcaaacactggaaccc
atagaagaaggactgttttgttgagcagagatgaaagtgaagcagaggcc
agctccctgtggtgccaactgctctgtgtcaagtcgcagttttgctaaca
tcactgacatgagggtgggcagagcagactgctcttctgaggcctccttt
gctgcactgccatctaaaccatacagaggctgttctactccacgcggtaa
gggattggataaggaatgttgtggtgaggatcatgcatctggtggaacac
ttctgccagggctggttcctggcccgcttcccccagcaaactcaaaggaa
tcgctaagtttatgtccccctagaagtgcctttcccttgctagtgtcata
tggctcagctttccttttccgatttcgcaggtcattctgctttttcctca
ggagtctctacttctttatcactcaaggaccccacgctgcacaaactctg
gtttggaagactcactgttgagtggtcccttacttacaccaactccagtg
aacctggcctctagtaattcctgccttcgtgggtccagactatgcagttc
ttcatcatttctgccgccgctgccgctccactctctctcaggaggggccc
cgacccgaccgggctgctgaccgctctgctctcccctgggcaggccgggg
cggagccggggctttcctgagcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145729540_145730525
seq2: B6Ng01-034I16.b_47_1024 (reverse)

seq1  CCACAATGTCTTGTAATATGTATCAACGGTCAGCATTTTTCAGAGACCTA  50
      |||||||||||||||  |||| || |||||||||| ||||||||||| ||
seq2  CCACAATGTCTTGTATAATGT-TCCACGGTCAGCA-TTTTCAGAGACTTA  48

seq1  TAGGACTTTCGTTCAATAAATGGGAAATAATGATCAGTTGTTATCCTATA  100
      || ||||||||||||| |||||||||||||||||||| |||||| |||||
seq2  TA-GACTTTCGTTCAA-AAATGGGAAATAATGATCAG-TGTTAT-CTATA  94

seq1  ATGTGAACCAAGCATTTGAGAAGAATTATTATTACTGAATACTCGAAGCA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAA-CAAGCATTTGAGAAGAATTATTATTACTGAATACTCGAAGCA  143

seq1  CACTTCACATCTGTAAGCATATTTATAGGATAAAGAATATGCTGTCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACATCTGTAAGCATATTTATAGGATAAAGAATATGCTGTCTGGG  193

seq1  TGGCTCAGTTTGCCAGATATTCTTTTAAGTATAATTTTTCTCAATTGGCT  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGCTCAGTTTGCCAGATATTCTTTTAAGTATAA-TTTTCTCAATTGGCT  242

seq1  CATTTGAATTAAATATACAGAATGTTACCAGTTTTATTAGATATTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATTAAATATACAGAATGTTACCAGTTTTATTAGATATTTTGAG  292

seq1  GACTGCATTAAAGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATTAAAGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTG  342

seq1  TCTCAATGAATGTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGAATGTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCT  392

seq1  TCATCTTGTAACATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGTAACATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGC  442

seq1  TTTCTACATTTTTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATTTTTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGAC  492

seq1  ATTATTTAAGATTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAGATTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAA  542

seq1  TCATACTAATTCTCTAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACG  600
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TCATACTAATTCTCTAGTGTGGAGCAACAATTGTTGTCAAGAATAGAACG  592

seq1  TGAATAAAACACAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAACACAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAA  642

seq1  AAGTTATTAGATATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTAGATATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTT  692

seq1  GATACAATGCATGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATGCATGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACA  742

seq1  TTCTAGGAAATAGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAATAGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGA  792

seq1  AAAGTTTCTCTTCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTCTTCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATC  842

seq1  TTGGTAAAGGATTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAGGATTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTA  892

seq1  TTAAAAACTGATGATTTCTCAGACTGACATTGTATTGTATTTGTCACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTGATGATTTCTCAGACTGACATTGTATTGTATTTGTCACATA  942

seq1  CAAACTATTTGTAAGGTATCTCTCCTGTATGAATTC  986
      ||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTTGTAAGGTATCTCTCCTGTATGAATTC  978

seq1: chr4_145593070_145593947
seq2: B6Ng01-034I16.g_70_943

seq1  GAATTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAC  50

seq1  AAAAACAAAAACAAAAAACAAAAACAAAGAAACAAACAAACAAAAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAAAAACAAAAACAAAGAAACAAACAAACAAAAAAACC  100

seq1  TGTCTCAAAAAACAAACAAAGAACAACAACAAAACAACAAAAAGAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAACAAACAAAGAACAACAACAAAACAACAAAAAGAAAGTA  150

seq1  TCATCATTGCAGCTTCCACAATCACAGGTCACTTTCAAACACTGGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGCAGCTTCCACAATCACAGGTCACTTTCAAACACTGGAACCC  200

seq1  ATAGAAGAAGGACTGTTTTGTTGAGCAGAGATGAAAGTGAAGCAGAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAAGGACTGTTTTGTTGAGCAGAGATGAAAGTGAAGCAGAGGCC  250

seq1  AGCTCCCTGTGGTGCCAACTGCTCTGTGTCAAGTCGCAGTTTTGCTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGTGGTGCCAACTGCTCTGTGTCAAGTCGCAGTTTTGCTAACA  300

seq1  TCACTGACATGAGGGTGGGCAGAGCAGACTGCTCTTCTGAGGCCTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACATGAGGGTGGGCAGAGCAGACTGCTCTTCTGAGGCCTCCTTT  350

seq1  GCTGCACTGCCATCTAAACCATACAGAGGCTGTTCTACTCCACGCGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTGCCATCTAAACCATACAGAGGCTGTTCTACTCCACGCGGTAA  400

seq1  GGGATTGGATAAGGAATGTTGTGGTGAGGATCATGCATCTGGTGGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGATAAGGAATGTTGTGGTGAGGATCATGCATCTGGTGGAACAC  450

seq1  TTCTGCCAGGGCTGGTTCCTGGCCCGCTTCCCCCAGCAAACTCAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGGGCTGGTTCCTGGCCCGCTTCCCCCAGCAAACTCAAAGGAA  500

seq1  TCGCTAAGTTTATGTCCCCCTAGAAGTGCCTTTCCCTTGCTAGTGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAGTTTATGTCCCCCTAGAAGTGCCTTTCCCTTGCTAGTGTCATA  550

seq1  TGGCTCAGCTTTCCTTTTCCGATTTCGCAGGTCATTCTGCTTTTTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCTTTCCTTTTCCGATTTCGCAGGTCATTCTGCTTTTTCCTCA  600

seq1  GGAGTCTCTACTTCTTTATCACTCAAGGACCCCACGCTGCACAAACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCTACTTCTTTATCACTCAAGGACCCCACGCTGCACAAACTCTG  650

seq1  G-TTGGAAGACTCACTGTTGAGTGGTCCCTTACTTACACCAACTCCAGTG  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAGACTCACTGTTGAGTGGTCCCTTACTTACACCAACTCCAGTG  700

seq1  AACCTGGCCTCTAGTAATTCCTGCCTTCGTGGGTCCAGACTATGCAGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCCTCTAGTAATTCCTGCCTTCGTGGGTCCAGACTATGCAGTTC  750

seq1  TTCCATCATTTCTGCCGCCGCTGCCGCTCCACTCTCCTCTCAGGAGGGGC  799
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TT-CATCATTTCTGCCGCCGCTGCCGCTCCACTCT-CTCTCAGGAGGGGC  798

seq1  CCCGACCCGACCGGGCTGCTGACCGCTCTGCTCTCCCCCTGGGCAGGCCC  849
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CCCGACCCGACCGGGCTGCTGACCGCTCTGCTCT-CCCCTGGGCAGG-CC  846

seq1  GGGGCGGAGCCGGGGCCTCTCCTGAGCGC  878
      ||||||||||||||| || ||||||||||
seq2  GGGGCGGAGCCGGGG-CTTTCCTGAGCGC  874