BAC Information

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BAC

Clone NameB6Ng01-034L15
Chromosome4 (Build37)
Map Location 145,422,114 - 145,422,639
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034L15.bB6Ng01-034L15.g
ACCDH863395DH863396
length1,057960
definitionDH863395|Mus musculus domesticus DNA, BAC clone: B6Ng01-034L15, 5' end.DH863396|Mus musculus domesticus DNA, BAC clone: B6Ng01-034L15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccattcattttcatggccatcatgacatccactctgcccatcttc
acacctgcctccaaaccacccaactccccttcatgtcccctatcccacac
agttccttcctgccttcggccttccactactattccatccctggttccaa
gggagccacaagcatccttgcttgtggcctccttcctgtcaatctccttg
gattggttgcatgtagcatggacatcattatcttatagctaatatatact
tttaaatgaatatatatcattcatgtcatttggggactgagttacctcac
tctatgtgatattctcaatatacatccatctacctgcataattcatggtg
tctttgttttcctttttttttaattggttattttatttatttatatttca
gatgttatatcctttccttgtttcccctctgcaaacccccataccatccc
ccattaccctacctctatgaggatgcttcccccaacatacccactcctgc
ttcacagccctagcattcttctacagtgagacatcagtccttcacaggac
caagggcctcccctcccattagtgccagataaagccccttcagctccctc
agtccttccccctatttcctgcatttaggtccctgtgctcagtccaatat
ttggctctgagcatctgcatctgtattggtcaggatctggtagagccaca
aaggagaaagctgtatcaggctcctgtcagcaaacacatctttagcctca
gcaatagtgtccaggtttggtgtttgcatgtgggatggatccccagttgg
gactgtttcttgatggcctttctttcagactctgctccactctttgtctc
tgtattttctttatataggagcagttctgggttcaattttggagatgggt
gtgtggtcccatccctcactggagagcctgcctaacatctggataagagt
tggtccttacaggatctccctcccctctgtgggaatttagctaattcatc
cccggggttctcttgctttcctgaatcgggacttctgttgcaccccattt
ctatcac
gaattccagtttcatgttcaattaaaaaggatttttttcaagcaagaatg
gtgggttttttgccacaccacctccagtaggatctgtgtgacaagttcca
ccgactgaagcaattgacctcaaaagatactgtaggtgtatgtgtcatat
taaaaaatcaacaaatgtaaaggcaaagaataatctatattagtaacaaa
ttgcttttcagtagctccttctacttgttgtaaggccaacaatccttctg
aagttaaaactcaaggagaggtaggatcagcactccccctaaaaatatca
aataagtgtttcaattctcctgtagtaagctttaaataaggatgaagtca
agtaatatcagctaacagcttttgaaaatcacttaaagttttaaaactgt
ccctacaaataactattttctgaggaaaaacagcttgatctgtaagccta
aaacctaaataattataacaatcttgagtttgcactttttctggaactat
ttgtattcatttatcaactaatgcctgttgtaaatttctataacatagaa
gcaagccctggagatctttccctgctaataagatatcatccatgtaatgc
ataattattagtcatttctgtcttataggctgaatggcttgtgccacaaa
tttttgtgcaacacataatgtaggactgttcgccatgccttgagaaagaa
ctatccattgacaccttttcattgggctcttcaaaattaatagaaagaat
actaaagcaaatctttcataatcttgagaatgcaaaggatagtaaagaaa
catctttcaaatctactattattttattatgtcctttatgaatgtctcca
cctgcttgatttctcagatttccaaaacactggctacagcacacattcaa
ttatctgtgctagagcagtatgaaactcaaaagaataacatgtgatccat
gaattatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145422114_145422639
seq2: B6Ng01-034L15.g_99_442

seq1  TTTTTTTCAAGCAAGAATGGTG---TTTGTTCCACACCACCTCCAGTAGG  47
      ||||||||||||||||||||||   ||| | |||||||||||||||||||
seq2  TTTTTTTCAAGCAAGAATGGTGGGTTTTTTGCCACACCACCTCCAGTAGG  50

seq1  ATCTTTGTGACAAGTTCCACAGACTGAGTGAGGCAATTGACGTCAAAAGG  97
      |||| ||||||||||||||| |||    ||| ||||||||| ||||||| 
seq2  ATCTGTGTGACAAGTTCCACCGAC----TGAAGCAATTGACCTCAAAAGA  96

seq1  CCCTGTAGGTGTATGAGTCATATTAAAAATCAACAAATGTGGACTGGTGA  147
        ||||||||||||| ||||||||                          
seq2  TACTGTAGGTGTATGTGTCATATT--------------------------  120

seq1  GATGGCTCAGTGGGTAAGAGCATCCGACTGCTCTTCCGAAGGTCCAGAGT  197
                                                        
seq2  --------------------------------------------------  120

seq1  TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCT  247
                                                        
seq2  --------------------------------------------------  120

seq1  GACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATA  297
                                                        
seq2  --------------------------------------------------  120

seq1  ATAAATAAATCTTTAAAAAAAAATCAACAAATGTAAACGCAAAGAATCAT  347
                       |||||||||||||||||||| ||||||||| ||
seq2  -----------------AAAAAATCAACAAATGTAAAGGCAAAGAATAAT  153

seq1  CTATATAAGTAACAAACTGTTTTTCAGTAGCTCTTTTCTAC---TTGTAA  394
      |||||| ||||||||| || |||||||||||||  ||||||   ||||||
seq2  CTATATTAGTAACAAATTGCTTTTCAGTAGCTC-CTTCTACTTGTTGTAA  202

seq1  GGCCAAC----------AAGTTAAAACTCAAAGAGAGGTAGGATCAGCAC  434
      |||||||          |||||||||||||| ||||||||||||||||||
seq2  GGCCAACAATCCTTCTGAAGTTAAAACTCAAGGAGAGGTAGGATCAGCAC  252

seq1  TCCCCCTAAGAATATCAAATAAGAGTTTCAATTCTCCTGTAGTAAGCTTT  484
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TCCCCCTAAAAATATCAAATAAGTGTTTCAATTCTCCTGTAGTAAGCTTT  302

seq1  AAATAAGGATGAAGGCAATTAATATCACTTGACAGCTTTTGA  526
      |||||||||||||| ||| ||||||||  | |||||||||||
seq2  AAATAAGGATGAAGTCAAGTAATATCAGCTAACAGCTTTTGA  344