BAC Information

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BAC

Clone NameB6Ng01-035C06
Chromosome4 (Build37)
Map Location 118,386,223 - 118,387,258
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341
Downstream geneOlfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C06.bB6Ng01-035C06.g
ACCDH863693DH863694
length1,004988
definitionDH863693|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C06, 5' end.DH863694|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaagtaatctccccctacatttggaaaagtattgacagctatt
tcctcattatttaggtttgctagagagacaccagttccagtctcatgata
agtcagttttatgtgacccttttctcttttctttagtcactttatcccga
ctgctgcctcccctccttgtccttcctctcacaatccctcccaccatccc
acctccctttcttctctgaggaggtggaggcctctctcggtatctcccta
accctggcagaacaagtctctgtggggttgtgtgcatcctctccccactg
aggccagacaaggcaggccagctaaagcctatcccatggacaggcaacag
ccttatggatagtccccacttccatccaggacccacatgaagaccaagct
gtacatctgctacatatatgtgggaaggcctaggtccagctcctgtatgc
tctttggtaggtggttcagtttctgagagccccaagggtccacattaatt
gacactgttggtcttcccgtggagttctgatccccttcagggccctcaat
cctcctcccaacttttccttaagagccccaagctccagctgactcagaca
gatgcacacaccctggttagtttcaatccatttcttggctctgaaggtga
ttcccgtgctctggttcctttaaagggagccaccgcactccttgtggttc
agctatatcccagcacccctagaagagagaagccaagccatgtgaagagg
cacagcagcagacatcagtctgcattctgccgaaccagaaaacagtgtgc
tctctgagacccggcaaaggtattttaaccatcaccagggcctcttactg
tgacccttggctgctggtctttctgagctctcagcagagcgcatctttct
ctcccatgatcagtcatttactctacagactccaaaaaaatctcatagtg
ttctcaaatccatagagaatgggcttctgtggggagcagagcaaataatg
ggtt
gaattccacacccctaagccccttaccccataaaagcccctggctttcga
gcctcgtggccggcatctgttatctcctgtgtgggattcatgccggtccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtccttgt
gtttctttgggtgctctcacactcccgagactagagtgggggtccctgaa
agggggtcttacattgtgaaagggagtgtgtctatgaataggtagggcag
ggggtgtgacatttcaaaagccaaatttatttccagttttctccctttct
ctccacttatacttgtggatcagatgtaagccctcagctattgcttaggc
aaccatgctagcctgcctgaggtcaagcctcttgctgtaatggtcatggg
cccacactctgaaattgcaagcccccactaaaaaacatttttactataag
ttgccttgctcataatgtctccttatagcacaaaagatgtctaagacaag
ggcatagtaacgatgacaaagaagccatgtaataggaggctgtgtcactt
ggtaatgttgcatccccagccaggaagccgacagacaaattccagtttca
gtacacagtcttcttttcaagactgtctagaaccctaggcctggatgctg
tgatggtttaaatgagatgtgccacggctctaagcatttgactgctttgc
ctccagttattaacactgtttgtattgttctaggagatgttgcttgatgg
aagactgtatcactaggtgcatgcactgaagttcccaagtccatcaccat
tctagtgtacacctcattattacctgattggggtttgagatgtcagctct
agcatcatggtctaatgcatggtcactctgcatcacagcttttgtctctc
tgacgatgtgacacacatcagatgggtcaccctcatcagtagcatatgca
gcagattttgctgatgacttgatatagctgtccttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118386223_118387258
seq2: B6Ng01-035C06.b_49_1052

seq1  GAATTCTGAAGTAATCTCCCCCTACATTTGGAAAAGTATTGACAGCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGTAATCTCCCCCTACATTTGGAAAAGTATTGACAGCTATT  50

seq1  TCCTCATTATTTAGGTTTGCTAGAGAGACACCAGTTCCAGTCTCATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTATTTAGGTTTGCTAGAGAGACACCAGTTCCAGTCTCATGATA  100

seq1  AGTCAGTTTTATGTGACCCTTTTCTCTTTTCTTTAGTCACTTTATCCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTTATGTGACCCTTTTCTCTTTTCTTTAGTCACTTTATCCCGA  150

seq1  CTGCTGCCTCCCCTCCTTGTCCTTCCTCTCACAATCCCTCCCACCATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTCCCCTCCTTGTCCTTCCTCTCACAATCCCTCCCACCATCCC  200

seq1  ACCTCCCTTTCTTCTCTGAGGAGGTGGAGGCCTCTCTCGGTATCTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTTTCTTCTCTGAGGAGGTGGAGGCCTCTCTCGGTATCTCCCTA  250

seq1  ACCCTGGCAGAACAAGTCTCTGTGGGGTTGTGTGCATCCTCTCCCCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCAGAACAAGTCTCTGTGGGGTTGTGTGCATCCTCTCCCCACTG  300

seq1  AGGCCAGACAAGGCAGGCCAGCTAAAGCCTATCCCATGGACAGGCAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGACAAGGCAGGCCAGCTAAAGCCTATCCCATGGACAGGCAACAG  350

seq1  CCTTATGGATAGTCCCCACTTCCATCCAGGACCCACATGAAGACCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGGATAGTCCCCACTTCCATCCAGGACCCACATGAAGACCAAGCT  400

seq1  GTACATCTGCTACATATATGTGGGAAGGCCTAGGTCCAGCTCCTGTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTGCTACATATATGTGGGAAGGCCTAGGTCCAGCTCCTGTATGC  450

seq1  TCTTTGGTAGGTGGTTCAGTTTCTGAGAGCCCCAAGGGTCCACATTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTAGGTGGTTCAGTTTCTGAGAGCCCCAAGGGTCCACATTAATT  500

seq1  GACACTGTTGGTCTTCCCGTGGAGTTCTGATCCCCTTCAGGGCCCTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTGGTCTTCCCGTGGAGTTCTGATCCCCTTCAGGGCCCTCAAT  550

seq1  CCTCCTCCCAACTTTTCCTTAAGAGCCCCAAGCTCCAGCTGACTCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCAACTTTTCCTTAAGAGCCCCAAGCTCCAGCTGACTCAGACA  600

seq1  GATGCACACACCCTGGTTAGTTTCAATCCATTTCTTGGCTCTGAAGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACACACCCTGGTTAGTTTCAATCCATTTCTTGGCTCTGAAGGTGA  650

seq1  TTCCCGTGCTCTGGTTCCTTTAAAGGGAGCCACCGCACTCCTTGTGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTGCTCTGGTTCCTTTAAAGGGAGCCACCGCACTCCTTGTGGTTC  700

seq1  AGCTATATCCCAGCACCCCTAGAAGAGAGAAGGCCAAGCCATGTGAAGAG  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTATATCCCAGCACCCCTAGAAGAGAGAA-GCCAAGCCATGTGAAGAG  749

seq1  GCACAGCAGGCAGACATCAGTCTGCATTCTGCCGAACCAGAAAACAAGTG  800
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GCACAGCA-GCAGACATCAGTCTGCATTCTGCCGAACCAGAAAAC-AGTG  797

seq1  TGCTCTCTGAGACCCGGCAAAGGTATTTTAACCATCACCAGGGCCTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGAGACCCGGCAAAGGTATTTTAACCATCACCAGGGCCTCTTA  847

seq1  CTGTGACCCTTGGCTGCTGGTCCTTTCTGAGCTCTCAGGCAGAGCGCCAT  900
      ||||||||||||||||||||| ||||||||||||||| |||||||| |||
seq2  CTGTGACCCTTGGCTGCTGGT-CTTTCTGAGCTCTCA-GCAGAGCG-CAT  894

seq1  CTTTCTCTTCCCATGATCCAGGTCAATTTTACCTTCTACCAGACCTTCCC  950
      ||||||| ||||||||||   ||||  |||||  |||| |||||  ||| 
seq2  CTTTCTC-TCCCATGATC--AGTCA--TTTAC--TCTA-CAGAC--TCC-  933

seq1  AAAAAAAAATCTCATAGTTTGGTTTCTCAAAAATCCCATAGAGAATGGGG  1000
        ||||||||||||||||     ||||||||    |||||||||||  ||
seq2  --AAAAAAATCTCATAGT----GTTCTCAAA---TCCATAGAGAAT--GG  972

seq1  GCTTTCCTGTGGGGAGCAGAGCCAAAATAATGGGTT  1036
      ||||  ||||||||||||||||  ||||||||||||
seq2  GCTT--CTGTGGGGAGCAGAGC--AAATAATGGGTT  1004