BAC Information

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BAC

Clone NameB6Ng01-035F20
Chromosome4 (Build37)
Map Location 9,757,482 - 9,758,557
singlet/doubletsinglet
Overlap genenone
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F20.bB6Ng01-035F20.g
ACCDH863851DH863852
length1,1661,042
definitionDH863851|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F20, 5' end.DH863852|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagactttcaaagaagagctaatgtcaatacttcccaactt
actccacaaaatagaaacaaaaagaacactgtcaaactgattctatgagg
ccacagtcactctgatacttaaacaacacataggctcaacaaagaaagag
atttttcagaccaatttcccttatgaacattgatcaaaaaatccccataa
aatactggcaaaccaaatccaagaacacatcaaaggtatcatccaccatg
atgaagtagtcatcatcccagagatgcaggagtggttcagtatacgaaaa
tccatcaatgtaatccaccatataaacaaactgacagaaagaaaccacat
gcatatctcactagatgccaaacaagcatttgacaaaatccaacctccct
tcataataaaagtcttggaaaagagctgggatgcaaggggcatacctaaa
cataataaaggaaataattagcatccatctaattaaatatagaaagactt
aaactatttccactaaaattggggacaagacaaggctgtccagtgtatcc
atatctcatcaatatactacttgaagttctgacaagagcaataagacagc
taaagaagatcaaggagatacaaattgaacaaaagagaagtcaaagtatc
actattcacagatgatataatggtatacatatatgaccccaaaaattcta
cctgagagttcctgcagctggtaattcaagctaattcaacaccttctaca
aagtggctggataaaaaattagtgcaaaaaaaatcaatagcccttctcta
cacagcataaatagactgagaaagagttagggaaacagtactcttcacaa
tagcacacataacataaaatacttggtctactctatcatgcagataaaag
actgtatgacagacttcagttctgagaagaactagcagtaaatgaaagtc
tcctgctcatgatggatgatacatagtgacatgcatctaccaaagcaact
acgatcatgcattccatcaatccatgatctcaactgaagatagttcaact
catagacacaccgtctaatctgatagtgaagagtacctggactagctact
agcatgatttaactggcaatgtgttaccaggactgattagcgtatactgc
aatgactgatccgaga
gaattcaaaacaaaacatgtttattgggaggaagaatgggaacagaacca
ggaaatggagactaggggtggggaacagcgctggccaatgaaatcacaga
catggcttaaagaggactgcctaaagcaaaaccctctaatattatctgtg
agtcgcctgctgagccagagggctgacacttccctacgcctgcagtgctg
cttgcctgatgtggcaacctgtaaactgggggaactgagcccagggagat
gacaagtacattccaggcaggaccgtgaaaatgagatggccgtagaaaga
aaacacggcaaggagcatgaattgaaggaaacttgaggggcgtcctcctc
caagaaacccccgaatgccacaaactggcagacaatagtttcccactgaa
aattccagactttcctaagttaaatattaaagaaaggccgcagaggcagg
atttattggtacccagacagtcagccactgcgtcatgtgttccccatgac
tctctgtaagggttcgcgtggattttgttcactacatttcttatggttgt
tcatcgtcccagttctcaagcatgttgccctgccctggagatacccagta
tgaactgagttcttctagagcagtacctttgaaacccagcaaatcgatga
gcaagagctaggaacgccaaggttaagttttctgtctacatagctgagtt
ctaaaagagtctggaattaagaaaaaaattcgccttgagcagtcgcgtga
agatatcttccagctctttgtgggagagacagcagcttgaattaattggc
ccctgtgatcgcttttctttcatctccagccgtggagaaagataaccaca
ggactgcagtgattatagtcatcaggtgatttgctaaagtaacctagctg
ctggagtcctacgggtctgtaacactttgtcagtctgcacatttgcagac
actttagatatccgcttgtaacagctcctcgtgactcgtcctcggaaatc
tgctcagcttatctccttcatagctgatgccgctaatttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9757482_9758557
seq2: B6Ng01-035F20.g_64_1105

seq1  GAATTCAAAACAAAACATGTTTATTGGGAGGAAGAATGGGAACAGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAAAACATGTTTATTGGGAGGAAGAATGGGAACAGAACCA  50

seq1  GGAAATGGAGACTAGGGGTGGGGAACAGCGCTGGCCAATGAAATCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGAGACTAGGGGTGGGGAACAGCGCTGGCCAATGAAATCACAGA  100

seq1  CATGGCTTAAAGAGGACTGCCTAAAGCAAAACCCTCTAATATTATCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTAAAGAGGACTGCCTAAAGCAAAACCCTCTAATATTATCTGTG  150

seq1  AGTCGCCTGCTGAGCCAGAGGGCTGACACTTCCCTACGCCTGCAGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCCTGCTGAGCCAGAGGGCTGACACTTCCCTACGCCTGCAGTGCTG  200

seq1  CTTGCCTGATGTGGCAACCTGTAAACTGGGGGAACTGAGCCCAGGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGATGTGGCAACCTGTAAACTGGGGGAACTGAGCCCAGGGAGAT  250

seq1  GACAAGTACATTCCAGGCAGGACCGTGAAAATGAGATGGCCGTAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTACATTCCAGGCAGGACCGTGAAAATGAGATGGCCGTAGAAAGA  300

seq1  AAACACGGCAAGGAGCATGAATTGAAGGAAACTTGAGGGGCGTCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGGCAAGGAGCATGAATTGAAGGAAACTTGAGGGGCGTCCTCCTC  350

seq1  CAAGAAACCCCCGAATGCCACAAACTGGCAGACAATAGTTTCCCACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACCCCCGAATGCCACAAACTGGCAGACAATAGTTTCCCACTGAA  400

seq1  AATTCCAGACTTTCCTAAGTTAAATATTAAAGAAAGGCCGCAGAGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGACTTTCCTAAGTTAAATATTAAAGAAAGGCCGCAGAGGCAGG  450

seq1  ATTTATTGGTACCCAGACAGTCAGCCACTGCGTCATGTGTTCCCCATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGGTACCCAGACAGTCAGCCACTGCGTCATGTGTTCCCCATGAC  500

seq1  TCTCTGTAAGGGTTCGCGTGGATTTTGTTCACTACATTTCTTATGGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAAGGGTTCGCGTGGATTTTGTTCACTACATTTCTTATGGTTGT  550

seq1  TCATCGTCCCAGTTCTCAAGCATGTTGCCCTGCCCTGGAGATACCCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTCCCAGTTCTCAAGCATGTTGCCCTGCCCTGGAGATACCCAGTA  600

seq1  TGAACTGAGTTCTTCTAGAGCAGTACCTTTGAAACCCAGCAAATCGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAGTTCTTCTAGAGCAGTACCTTTGAAACCCAGCAAATCGATGA  650

seq1  GCAAGAGCTAGGAACGCCAAGGTTAAGTTTTCTGTCTACATAGCTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGCTAGGAACGCCAAGGTTAAGTTTTCTGTCTACATAGCTGAGTT  700

seq1  CTAAAAGAGTCTGGAATTAAGAAAAAAATTCGCCTTGAGCAGTCGCGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAGTCTGGAATTAAGAAAAAAATTCGCCTTGAGCAGTCGCGTGA  750

seq1  AGATATCTTCCAGCTCTTTGTGGGAGAGAACAGCAGCTTGAATTAATTGG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGATATCTTCCAGCTCTTTGTGGGAGAG-ACAGCAGCTTGAATTAATTGG  799

seq1  CCCCTGTGATCGCTTTTCTTTCATCTCCAGCCGTGGAAGAAAGATAACCA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCCTGTGATCGCTTTTCTTTCATCTCCAGCCGTGG-AGAAAGATAACCA  848

seq1  CAGGACTGCAGTGATTATAGTCATCAGGGTGATTTGCTAAAGGTAAACCT  900
      |||||||||||||||||||||||||| |||||||||||||||   |||||
seq2  CAGGACTGCAGTGATTATAGTCATCA-GGTGATTTGCTAAAG--TAACCT  895

seq1  AGCTGCTGGAGTCCCACGGGTTCTGTAAACACTTTGTCAGTCTGCACATT  950
      |||||||||||||| ||||| ||||| ||||||||||||||||||||| |
seq2  AGCTGCTGGAGTCCTACGGG-TCTGT-AACACTTTGTCAGTCTGCACA-T  942

seq1  TTGCAGACAACTTTTAAGGAACCATCCGCTTGTTTAACAGGCTTCTTCGG  1000
      |||||||| |||||     |   |||||||||  ||||||    || |  
seq2  TTGCAGAC-ACTTT-----AGATATCCGCTTG--TAACAG----CTCCTC  980

seq1  GTGAGCCCCGTCCTCGGAGATACTGGCTCCAGCCTTTAATCCTCCTTTCA  1050
      ||||  | |||||||||| || || ||| |||| | |    |||| ||||
seq2  GTGA--CTCGTCCTCGGAAAT-CT-GCT-CAGCTTAT----CTCC-TTCA  1020

seq1  TTTAAGCTGATGCCGCTAATATTTTC  1076
      |   |||||||||||||||| |||||
seq2  T---AGCTGATGCCGCTAAT-TTTTC  1042