BAC Information

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BAC

Clone NameB6Ng01-035I11
Chromosome4 (Build37)
Map Location 123,006,441 - 123,125,225
singlet/doubletdoublet
Overlap geneBmp8a, Macf1, D830031N03Rik
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Oxct2a
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035I11.bB6Ng01-035I11.g
ACCDH863969DH863970
length967756
definitionDH863969|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I11, 5' end.DH863970|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,124,235 - 123,125,225)(123,006,441 - 123,007,205)
sequence
gaattcctttcttggtgtggttccatatgccctacccagaactgaacata
gtaacatctcctgtttcaaacccaaagtcgggcatggtggtacataccta
aagacattaggagaaatacttaggagaaatttgtgcctcagctgagcatt
aagattgagccagcctaggctacttgaaacatagtttccaaaaaaccagc
acaggctattcttagatgcctgtcatgatgtgtaagaaatttaaaatact
tcataaagccgggcagaggtagtgcatgcctttaatcccagcacttggga
ggcagaggcaggcggatttctaagttcaagtccagcctggtctacagagt
gagttccaggacaggcaaggctacacagagaaaccctgtcttgggaaaaa
aatcataaaaaggattggttaactctatttcttgagaagcttacattttc
atctcagggctgagaatcattattactcatgcttgagaattagacagctg
cacatgagcaactgaccagacatggagtcaggaagctgtgggggtgggga
actagaattctggctcgtcgggagaagcacaggcttgaaaactagcttta
gtgactgtcatttccctcgcaagaagcaggctggagtagagcagatgaaa
gagaggaatttggttactttcccaaatggactctaagagaattgaaattc
tcttaaaatgaagttccccacaaatgaaagaaacctaatacactctacta
atttcccatgttaagttcccaggtccaagcaccttaatagttgttgttcc
atgatggtcaacaaatgtaccttgattcctctgaaaattttaaatattct
gtttaagtctgaatcgtaaacattaagggtgattatgactgatttgacag
cagtgcctgcctgccttcagttgagcgtgtcatgtagcttgctaacctga
tgaccttgctgtctgct
gaattctctgagtgactcccggaggaggttgatgtttggagcaaggtctc
caagtagaatatctcttcctttgcaattaataatgggcaatgggggggtg
tcccagaatttcattttggggtacgtgggggaaggtgcttgatgtttttc
ttctcccaattctgacagcttcataaaatccttccattttgctggcgaca
tggctgaggttaaaagcatttgctgctctgggagaggacccagtttcagc
tcccatcactgagttgtcagctcaaaaccacctgtaacttcagttccaat
ggatatgataccctcttctgaccagagagtgtccacacacaatacacata
tatgcactcaggcacatacataaaataaataatcatttgtattttaaatc
cttcaatttctgcattcatttctctagtggcatccacaaaaattacccac
ttcacttatttaacacatttttaaatttcattcattcactcatttgtgtg
tgtgtgtgtgattcttttatggggctggtctgtcacaggcactttcccat
acagtataaggtgctataacaatgtcctgaaattacaggattgccctccc
ctctcctagtagcaaaaccaaaatcaactccagaaattgtcaaggccctt
aagaagccaaacaaaccgtggttataaaccacttctcttgaaaatgcaga
actctcttcggcttgctggtaggaggggatcctttagtgggtgtctataa
cagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123124235_123125225
seq2: B6Ng01-035I11.b_42_1008 (reverse)

seq1  AGCAG--AGCAAGACAAAGAGTCATCAGTGTCTAGCAAGCTCACATGCAC  48
      |||||  ||||||       |||||||| || ||||||||| |||||   
seq2  AGCAGACAGCAAG-------GTCATCAG-GT-TAGCAAGCT-ACATG--A  38

seq1  CACGCTTCAAACTGACAGGCAGGCAGGCACTGCTTGTCAAATCAGTCATT  98
      ||||||   |||||| ||||||||||||||||| |||||||||||||| |
seq2  CACGCT--CAACTGA-AGGCAGGCAGGCACTGC-TGTCAAATCAGTCA-T  83

seq1  AATCACCCTTAATTGTTTACGATTTCAGACTTAAAACAGAATATTTAAAA  148
      |||||||||||| ||||||||| ||||||||| ||||||||||||| |||
seq2  AATCACCCTTAA-TGTTTACGA-TTCAGACTT-AAACAGAATATTT-AAA  129

seq1  ATTTTCAGAGGAATACAAGTGACATTTGTTGGACATCATGTGAACAACAA  198
      |||||||||||||| ||||  ||||||||||  ||||||| |||||||||
seq2  ATTTTCAGAGGAAT-CAAGGTACATTTGTTGACCATCATG-GAACAACAA  177

seq1  CTACTAAGCTGCTTGGACCTGAGAACTTAACATGTGGAATTAGTAGAGTG  248
      ||| |||| |||||||||||| |||||||||||| | |||||||||||||
seq2  CTATTAAGGTGCTTGGACCTGGGAACTTAACATGGGAAATTAGTAGAGTG  227

seq1  TATTAGGTTTCTTTCATTTGTGGGGAACTTCATTTTAAGAGAATTTCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTAGGTTTCTTTCATTTGTGGGGAACTTCATTTTAAGAGAATTTC-AA  276

seq1  TTCTCTTAGAGTCCATTTTGTGAAAGTAACCAAATTCCTCTCTTTCATCT  348
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  TTCTCTTAGAGTCCA-TTTGGGAAAGTAACCAAATTCCTCTCTTTCATCT  325

seq1  GCTCTAGCTCCAGCCTGCTTCTTTGCGAGGGAAATGACAGTCACT-AAGC  397
      |||||| |||||||||||||| ||||||||||||||||||||||| ||||
seq2  GCTCTA-CTCCAGCCTGCTTC-TTGCGAGGGAAATGACAGTCACTAAAGC  373

seq1  TAGTTTTCAAGCCTGTGCTTCTCCCGACGAGCCAGAATTCTAGTTCCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCAAGCCTGTGCTTCTCCCGACGAGCCAGAATTCTAGTTCCCCA  423

seq1  CCCCCACAGCTTCCTGACTCCATGTCTGGTCAGTTGCTCATGTGCAGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGCTTCCTGACTCCATGTCTGGTCAGTTGCTCATGTGCAGCTG  473

seq1  TCTAATTCTCAAGCATGAGTAATAATGATTCTCAGCCCTGAGATGAAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTCAAGCATGAGTAATAATGATTCTCAGCCCTGAGATGAAAAT  523

seq1  GTAAGCTTCTCAAGAAATAGAGTTAACCAATCCTTTTTATGATTTTTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTCTCAAGAAATAGAGTTAACCAATCCTTTTTATGATTTTTTTC  573

seq1  CCAAGACAGGGTTTCTCTGTGTAGCCTTGCCTGTCCTGGAACTCACTCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGGGTTTCTCTGTGTAGCCTTGCCTGTCCTGGAACTCACTCTG  623

seq1  TAGACCAGGCTGGACTTGAACTTAGAAATCCGCCTGCCTCTGCCTCCCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGACTTGAACTTAGAAATCCGCCTGCCTCTGCCTCCCAA  673

seq1  GTGCTGGGATTAAAGGCATGCACTACCTCTGCCCGGCTTTATGAAGTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCATGCACTACCTCTGCCCGGCTTTATGAAGTATT  723

seq1  TTAAATTTCTTACACATCATGACAGGCATCTAAGAATAGCCTGTGCTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCTTACACATCATGACAGGCATCTAAGAATAGCCTGTGCTGGT  773

seq1  TTTTTGGAAACTATGTTTCAAGTAGCCTAGGCTGGCTCAATCTTAATGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAAACTATGTTTCAAGTAGCCTAGGCTGGCTCAATCTTAATGCT  823

seq1  CAGCTGAGGCACAAATTTCTCCTAAGTATTTCTCCTAATGTCTTTAGGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGCACAAATTTCTCCTAAGTATTTCTCCTAATGTCTTTAGGTA  873

seq1  TGTACCACCATGCCCGACTTTGGGTTTGAAACAGGAGATGTTACTATGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACCATGCCCGACTTTGGGTTTGAAACAGGAGATGTTACTATGTT  923

seq1  CAGTTCTGGGTAGGGCATATGGAACCACACCAAGAAAGGAATTC  991
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGGTAGGGCATATGGAACCACACCAAGAAAGGAATTC  967

seq1: chr4_123006441_123007205
seq2: B6Ng01-035I11.g_65_820

seq1  GAATTCTCTGAGTGACTCCCGGAGGAGGTTGATGTTTGGAGCAAGGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTGACTCCCGGAGGAGGTTGATGTTTGGAGCAAGGTCTC  50

seq1  CAAGTAGAATATCTCTTCCTTTGCAATTAATAATGGGCAATGGGGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGAATATCTCTTCCTTTGCAATTAATAATGGGCAATGGGGGGGTG  100

seq1  TCCCAGAATTTCATTTTGGGGTACGTGGGGGAAGGTGCTTGATGTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAATTTCATTTTGGGGTACGTGGGGGAAGGTGCTTGATGTTTTTC  150

seq1  TTCTCCCAATTCTGACAGCTTCATAAAATCCTTCCATTTTGCTGGCGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAATTCTGACAGCTTCATAAAATCCTTCCATTTTGCTGGCGACA  200

seq1  TGGCTGAGGTTAAAAGCATTTGCTGCTCTGGGAGAGGACCCAGTTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGGTTAAAAGCATTTGCTGCTCTGGGAGAGGACCCAGTTTCAGC  250

seq1  TCCCATCACTGAGTTGTCAGCTCAAAACCACCTGTAACTTCAGTTCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACTGAGTTGTCAGCTCAAAACCACCTGTAACTTCAGTTCCAAT  300

seq1  GGATATGATACCCTCTTCTGACCAGAGAGTGTCCACACACAATACACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGATACCCTCTTCTGACCAGAGAGTGTCCACACACAATACACATA  350

seq1  TATGCACTCAGGCACATACATAAAATAAATAATCATTTGTATTTTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTCAGGCACATACATAAAATAAATAATCATTTGTATTTTAAATC  400

seq1  CTTCAATTTCTGCATTCATTTCTCTAGTGGCATCCACAAAAATTACCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTCTGCATTCATTTCTCTAGTGGCATCCACAAAAATTACCCAC  450

seq1  TTCACTTATTCAACACATTTTTAAATTTCATTCATTCACTCATTTGTGTG  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTATTTAACACATTTTTAAATTTCATTCATTCACTCATTTGTGTG  500

seq1  TGTGTGTGTGATTCTTTTAT-GGGCTGGTCTGTCACAGGCACTTTCCCAT  549
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTGTGTGTGATTCTTTTATGGGGCTGGTCTGTCACAGGCACTTTCCCAT  550

seq1  ACAGTATAGGGTGCTATAACAATGTCCTGAATTTACAGGATTGCCCTCCC  599
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGTATAAGGTGCTATAACAATGTCCTGAAATTACAGGATTGCCCTCCC  600

seq1  CTCT-CTAGTAGCAAAGACCAAAATCAACTCCAGATATTGTCCAAGGCCC  648
      |||| ||||||||||| |||||||||||||||||| ||||| ||||| ||
seq2  CTCTCCTAGTAGCAAA-ACCAAAATCAACTCCAGAAATTGT-CAAGG-CC  647

seq1  CTAAAGAGGCCAAACAAACCGTGGTTATAGACCACTTCCTTTGAATAGTG  698
      || |||| ||||||||||||||||||||| ||||||||  ||||| | ||
seq2  CTTAAGAAGCCAAACAAACCGTGGTTATAAACCACTTCTCTTGAA-AATG  696

seq1  CCAGAACTCTCTTCGGCCTTGCTGGTTAGGATGTGGAATCCTTTTAGTGG  748
       ||||||||||||||| |||||||| |||||   || |||| ||||||||
seq2  -CAGAACTCTCTTCGG-CTTGCTGG-TAGGA--GGGGATCC-TTTAGTGG  740

seq1  GTGTCTAGTAACAGTGA  765
      ||||||| |||||||||
seq2  GTGTCTA-TAACAGTGA  756