BAC Information

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BAC

Clone NameB6Ng01-035J04
Chromosome4 (Build37)
Map Location 147,049,368 - 147,050,272
singlet/doubletsinglet
Overlap geneLOC100043100
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035J04.bB6Ng01-035J04.g
ACCDH864001DH864002
length990903
definitionDH864001|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J04, 5' end.DH864002|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacgtccttaatcatcagggaaatgcaaatcaaaacaacactgaga
ttccacttcactccagtcagaatggctaagatcaaaaactcaggtgacag
cagatgctggcgaggatgtggagaaaggggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctc
agaaaattggacatagtactactggaggatcccgcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaagaacacatgctccacta
tgttcttagcagccttgtttataatagccagaagctggaaagaacccaga
tgctcctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggaatactactcagctattaaaaaaaatgaatttatgaaattccctaggc
aaatggatggacctggagggtattatcctgagtgaagtaacccaatcaca
aaggaactcgcacaatatggtactcactgataagtggatattagccccaa
aacttaagaatacccaagatattaagatacaatttgccaaacgctttaaa
ttcaagaagaacgaagaccaaagggtggacccctttaccctttccttaga
aagggaacaaaacacttatgggaaggatttacaaagacaaaatttgggag
ctgtgacaaaggaggaccatctagtgattgcatttgcagggatccatccc
atatcacttcaaaggctaacccattgctaacctacaagattttgctaaag
gacccaaaattgtctttcttttgaaaatttgcgggggtcagcaaacagaa
tggtgatcccgcccctattggatgggtacccggctccatggaggactaaa
aatacccaggattatggggactgaccgttaggggatacaa
gaattctctgatgaattctcagactgcttttttcagtaaagcatttgcca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcagactggttttatcagtaaagcatttgccacattcactgcatttgt
aaggtttctctcctttatgaattctctgatgcatagtaagattgaatttg
tttttaaaacatttgtcacattcactacatttgtaaattttctcttctgt
atgaattccctgatgaatactaagatggatctgatgggtaaagcatttgt
cacttttactactttcgtaaggtttctttccatgataaattctctgctga
ctttgtagtttttctctctgggtaagatatttgtgaaattcactacattt
gtaagggttccctgcaatattgtcttttttcaccatgactttatgtttag
aaacaaaaatcttgtctaattctgcatttcggttgtgttttttcttctgc
atgttaattccttgattgagactaatggtagaaaacaaacttaaactgtt
tacagagtcattgtatttgcaaacttctttagtgttcctgggcttaagtc
ttttttgggtcgagaattgaagagcatcagagctgtgattagttttgtaa
ggtgtacactggagggattcaagaatgacattgctaagcttgttccattt
agaagacttctcttgaatattcatggtgtcatggaaaatgtactggctgt
cttgatccaataccttcccattctttccacgtatgcaatgattttctgaa
aaaaaggggggcaattagaggggacatggattacttatataaggagtaag
ggacctcataatcagtggagcttatggattcgtactctcaagaaaggatc
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147049368_147050272
seq2: B6Ng01-035J04.g_65_967

seq1  GAATTCTCTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCA  50

seq1  CATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAAT  100

seq1  TCTCAGACTGGTTTTATCAGTAAAGCATTTGCCACATTCACTGCATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACTGGTTTTATCAGTAAAGCATTTGCCACATTCACTGCATTTGT  150

seq1  AAGGTTTCTCTCCTTTATGAATTCTCTGATGCATAGTAAGATTGAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCTCCTTTATGAATTCTCTGATGCATAGTAAGATTGAATTTG  200

seq1  TTTTTAAAACATTTGTCACATTCACTACATTTGTAAATTTTCTCTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACATTTGTCACATTCACTACATTTGTAAATTTTCTCTTCTGT  250

seq1  ATGAATTCCCTGATGAATACTAAGATGGATCTGATGGGTAAAGCATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCCCTGATGAATACTAAGATGGATCTGATGGGTAAAGCATTTGT  300

seq1  CACTTTTACTACTTTCGTAAGGTTTCTTTCCATGATAAATTCTCTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTACTACTTTCGTAAGGTTTCTTTCCATGATAAATTCTCTGCTGA  350

seq1  CTTTGTAGTTTTTCTCTCTGGGTAAGATATTTGTGAAATTCACTACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGTTTTTCTCTCTGGGTAAGATATTTGTGAAATTCACTACATTT  400

seq1  GTAAGGGTTCCCTGCAATATTGTCTTTTTTCACCATGACTTTATGTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTTCCCTGCAATATTGTCTTTTTTCACCATGACTTTATGTTTAG  450

seq1  AAACAAAAATCTTGTCTAATTCTGCATTTCGGTTGTGTTTTTTCTTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATCTTGTCTAATTCTGCATTTCGGTTGTGTTTTTTCTTCTGC  500

seq1  ATGTTAATTCCTTGATTGAGACTAATGGTAGAAAACAAACTTAAACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTCCTTGATTGAGACTAATGGTAGAAAACAAACTTAAACTGTT  550

seq1  TACAGAGTCATTGTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTCATTGTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTC  600

seq1  TTTTTTGGGTCGAGAATTGAAGAGCATCAGAGCTGTGATTAGTTTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGGTCGAGAATTGAAGAGCATCAGAGCTGTGATTAGTTTTGTAA  650

seq1  GGTGTACACTGGAGGGATTCAAGAATGACATTGCTAAGCTTGTCCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGTACACTGGAGGGATTCAAGAATGACATTGCTAAGCTTGTTCCATTT  700

seq1  AGAAGACTTCTCTTGAATATTCATGTGTTCATGGACAATGTACTGGCTGT  750
      |||||||||||||||||||||||||   ||||||| ||||||||||||||
seq2  AGAAGACTTCTCTTGAATATTCATGGTGTCATGGAAAATGTACTGGCTGT  750

seq1  CTTGATCCAATACCTTCCCATTCTTTCCACGTATGCAATGATTTTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCAATACCTTCCCATTCTTTCCACGTATGCAATGATTTTCTGAA  800

seq1  AAAAAAGGGGGGGCAATTAGAGGTGACATGAATTACTTATATAAGGAGTA  850
      |||||  |||||||||||||||| |||||| |||||||||||||||||||
seq2  AAAAA--GGGGGGCAATTAGAGGGGACATGGATTACTTATATAAGGAGTA  848

seq1  AGGGACTCAATAATCAGT-GAGCTTATGGATTCGTACTCTCAAGAAAGGT  899
      ||||||   ||||||||| |||||||||||||||||||||||||||||| 
seq2  AGGGACCTCATAATCAGTGGAGCTTATGGATTCGTACTCTCAAGAAAGG-  897

seq1  ATCTCT  905
      ||||||
seq2  ATCTCT  903