BAC Information

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BAC

Clone NameB6Ng01-035M05
Chromosome5 (Build37)4 (Build37)
Map Location 64,202,421 - 64,203,331125,669,002 - 125,669,397
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110047P20Rik, LOC100042133
Downstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M05.bB6Ng01-035M05.g
ACCDH864143DH864144
length899576
definitionDH864143|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M05, 5' end.DH864144|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,202,421 - 64,203,331)(125,669,002 - 125,669,397)
sequence
gaattcccaggtgagtgaacacgaccttggagaacctctccagatacctt
cacacacacacatacacacacacacacacacacacacacacacacacaca
cacacacacaccgttgatctgagaattcccatatatacctccccccaccc
caaaatatctttaaacatggcaggcagcattggaaagctttggtgatatt
gtaaacaacaatcagatgcaattgtgtatgtagttctcaacaaaacaatt
actttaaaagaactttaaatacccaagagttaaaagaaaactaaaggcat
tatcaagtttcttaccttcctctctttactactactgagttgaacctcaa
agtttctccccactgactctaaaaacccaaaacaaattccaaagtctctt
tttgatccgaaaaacctaattcatatataaatggaccagtatcccatgga
atttctgacaaggctggaaattgaacctgagcatcatttattctaacaag
aaatttttttcttcaaatcaataaatgacattcaacaacgtatgatttcc
ctcgtaaatcgacatttgaaagcacaaaggtattttagcactaaaaagga
caaaaaaaccactgagtgttctcccatagagcgtggcaaatgcctgtgaa
gacagcggggatgtccaactcaaactcgctggagaaaattaggtctttgg
gaagttccctcagtgctctcccccgcatagcctttaatcctctcactgca
agccttgagcatggaaaggaaaggaaggaagctagatggcgccaatgctc
aacaattttcttggctcttggaaatgccagctctcccagcctctggccag
gtggaccggagaccgaatcttaaaccgatttcagatagcaccggttctc
gaattctttgttttaagaattgctgtttgagtcgctgacttggttaaaaa
aaaaaaaaaaaacccaaaaaaatgaattttgccttgaatttggtacacaa
attccaacaacttctgaaatgactaaatgtacttcagtcatttggtactc
tatagtcatgctaattggaattatcagtagtgataattataaaaatcaaa
gtagctagcaaattctggaaagtgttgaaaatgtcctttgtcgactcaga
tattcagctgagatttaattcttcatataagagtaaatgaggacattcat
cttattagtatgcaaatttgctttcctcttcaccaaatggtaagatggta
tcaaggaattgttttaaaataaaatatattatgttacaaagtaggtgttt
gacttgtatactcctttttatatatctacatacttagggttttctttttt
tttttttttttttttttccgagacagggtttctctgtgtagccctggctg
tcctggaactcactctgtagaccaggctagcctcgaactcagaaatctgc
ctgcctctgcctcccaagtgctggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64202421_64203331
seq2: B6Ng01-035M05.b_44_942

seq1  GAATTCCCAGGTGAGTGAACACGACCTTGGAGAACCTCTCCAGATACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGTGAGTGAACACGACCTTGGAGAACCTCTCCAGATACCTT  50

seq1  CACACACACACATACACACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACACACACACACACACACACACACACACACACACA  100

seq1  CACACACACACCGTTGATCTGAGAATTCCCATATATACCTCCCCCCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCGTTGATCTGAGAATTCCCATATATACCTCCCCCCACCC  150

seq1  CAAAATATCTTTAAACATGGCAGGCAGCATTGGAAAGCTTTGGTGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCTTTAAACATGGCAGGCAGCATTGGAAAGCTTTGGTGATATT  200

seq1  GTAAACAACAATCAGATGCAATTGTGTATGTAGTTCTCAACAAAACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAACAATCAGATGCAATTGTGTATGTAGTTCTCAACAAAACAATT  250

seq1  ACTTTAAAAGAACTTTAAATACCCAAGAGTTAAAAGAAAACTAAAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAGAACTTTAAATACCCAAGAGTTAAAAGAAAACTAAAGGCAT  300

seq1  TATCAAGTTTCTTACCTTCCTCTCTTTACTACTACTGAGTTGAACCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTTCTTACCTTCCTCTCTTTACTACTACTGAGTTGAACCTCAA  350

seq1  AGTTTCTCCCCACTGACTCTAAAAACCCAAAACAAATTCCAAAGTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCCCCACTGACTCTAAAAACCCAAAACAAATTCCAAAGTCTCTT  400

seq1  TTTGATCCGAAAAACCTAATTCATATATAAATGGACCAGTATCCCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCGAAAAACCTAATTCATATATAAATGGACCAGTATCCCATGGA  450

seq1  ATTTCTGACAAGGCTGGAAATTGAACCTGAGCATCATTTATTCTAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACAAGGCTGGAAATTGAACCTGAGCATCATTTATTCTAACAAG  500

seq1  AAATTTTTTTCTTCAAATCAATAAATGACATTCAACAACGTATGATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTCTTCAAATCAATAAATGACATTCAACAACGTATGATTTCC  550

seq1  CTCGTAAATCGACATTTGAAAGCACAAAGGTATTTTAGCACTAAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAAATCGACATTTGAAAGCACAAAGGTATTTTAGCACTAAAAAGGA  600

seq1  CAAAAAAACCACTGAGTGTTCTCCCATAGAGCGTGGCAAATGCCTGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACCACTGAGTGTTCTCCCATAGAGCGTGGCAAATGCCTGTGAA  650

seq1  GACAGCGGGGATGTCCAACTCAAAACTCGCTGGAGAAAATTAGGTCTTTG  700
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACAGCGGGGATGTCCAACTC-AAACTCGCTGGAGAAAATTAGGTCTTTG  699

seq1  GGAAGTTCTCTCAGTTGCTTCTCCCCGCATTGCCTTTTAATCCTCTCACT  750
      |||||||| ||||| ||||   |||||||| ||| |||||||||||||||
seq2  GGAAGTTCCCTCAG-TGCTCTCCCCCGCATAGCC-TTTAATCCTCTCACT  747

seq1  GCGAGCCTTGAGCATGGAGAGGAAAGAGAGGAAGCTAGATGGCGCAATTG  800
      || ||||||||||||||| |||||||  ||||||||||||||||| | ||
seq2  GCAAGCCTTGAGCATGGAAAGGAAAGGAAGGAAGCTAGATGGCGCCAATG  797

seq1  CTCAACACATTTTCCTGGCTTCTGGAAATGCCAGCTCTCCACAGCTTCTG  850
      ||||||| |||||| |||||  |||||||||||||||||| |||| ||| 
seq2  CTCAACA-ATTTTCTTGGCTCTTGGAAATGCCAGCTCTCC-CAGCCTCT-  844

seq1  GGCCAGGTGGACCGAAGACCGAAATCTTAAACCGAATTTCAAGATTAAAG  900
      |||||||||||||| |||||| |||||||||||| ||||| ||||   ||
seq2  GGCCAGGTGGACCGGAGACCG-AATCTTAAACCG-ATTTC-AGAT---AG  888

seq1  CACCGGTTCTC  911
      |||||||||||
seq2  CACCGGTTCTC  899

seq1: chr4_125669002_125669397
seq2: B6Ng01-035M05.g_112_633 (reverse)

seq1  CTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCT  50
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  CTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCTAGCCTGGTCT  50

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAAACCCTGTCTCG  100
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG  100

seq1  ------AAAAACAAAAAAACAAAATAAAAC-----------AAACAAACA  133
            ||||| ||||||| |||| |||||           | | | | |
seq2  GAAAAAAAAAAAAAAAAAAAAAAAGAAAACCCTAAGTATGTAGATATATA  150

seq1  AAAAAGA----AAAAGAAAAA---------------------------AT  152
      |||| ||    | |||  |||                           ||
seq2  AAAAGGAGTATACAAGTCAAACACCTACTTTGTAACATAATATATTTTAT  200

seq1  TCTAAAAGAGT--CATGTTTGC-TCT--CCAT----------GG------  181
      | ||||| | |  | || |  | |||  ||||          ||      
seq2  TTTAAAACAATTCCTTGATACCATCTTACCATTTGGTGAAGAGGAAAGCA  250

seq1  -ATTTTCTGACTAAAATCAGAAATCCTGTTAGAAAGTCT----TGAAGAG  226
       |||| |  ||||| |  |  |||    | |   | |||    |||||| 
seq2  AATTTGCATACTAATAAGATGAATGTCCTCATTTACTCTTATATGAAGAA  300

seq1  CTGTGTTTAATCTCAAGAGCT--CTCCAAACAGG------TCAGCTCT--  266
       |   | | | || || | ||   || | | |||      ||| | ||  
seq2  TTAAATCTCAGCTGAATATCTGAGTCGACAAAGGACATTTTCAACACTTT  350

seq1  -CA-------CTAGGGA-----------AAAAAAAAAACTTTAAAAAATA  297
       ||       ||||  |           | ||  |  |||    | ||| 
seq2  CCAGAATTTGCTAGCTACTTTGATTTTTATAATTATCACTACTGATAATT  400

seq1  ACTGCTAGCTCATCTCCTGCAGACCAAAAGGC--AAG--------GTTTT  337
       |   ||||    ||   |   |||||| | |  |||        ||  |
seq2  CCAATTAGCATGACTATAGAGTACCAAATGACTGAAGTACATTTAGTCAT  450

seq1  TTGTTTGGTTGGTTGGTTTTTTTGT----TGTT----------GTTGTTG  373
      ||     ||| |||||  ||| |||      ||           |  || 
seq2  TTCAGAAGTT-GTTGGAATTTGTGTACCAAATTCAAGGCAAAATTCATTT  499

seq1  TTTTGGGTTTTTTTTTTTTTTTT  396
      |||||||||||||||||||||||
seq2  TTTTGGGTTTTTTTTTTTTTTTT  522